Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17660

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroH and ppsR are separated by 156 nucleotidesppsR and ppsA are separated by 331 nucleotides NOLOHH_17655: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 3,463,736 to 3,464,782 aroH NOLOHH_17660: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 3,464,939 to 3,465,772 ppsR NOLOHH_17665: ppsA - phosphoenolpyruvate synthase, at 3,466,104 to 3,468,482 ppsA Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -1 0 1 2at 3464.093 kb on - strand, within aroHat 3464.093 kb on - strand, within aroHat 3464.125 kb on - strand, within aroHat 3464.164 kb on + strand, within aroHat 3464.291 kb on - strand, within aroHat 3464.448 kb on - strand, within aroHat 3465.397 kb on - strand, within ppsRat 3465.995 kb on + strandat 3466.038 kb on + strandat 3466.165 kb on + strandat 3466.437 kb on + strand, within ppsAat 3466.505 kb on + strand, within ppsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,464,093 - aroH NOLOHH_17655 0.34 +1.2
3,464,093 - aroH NOLOHH_17655 0.34 +0.8
3,464,125 - aroH NOLOHH_17655 0.37 -0.8
3,464,164 + aroH NOLOHH_17655 0.41 +1.2
3,464,291 - aroH NOLOHH_17655 0.53 -0.4
3,464,448 - aroH NOLOHH_17655 0.68 -0.8
3,465,397 - ppsR NOLOHH_17660 0.55 -0.8
3,465,995 + -1.2
3,466,038 + +0.2
3,466,165 + -0.5
3,466,437 + ppsA NOLOHH_17665 0.14 +1.8
3,466,505 + ppsA NOLOHH_17665 0.17 +1.8

Or see this region's nucleotide sequence