Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17650

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntselO and ydiE are separated by 3 nucleotidesydiE and aroH are separated by 131 nucleotides NOLOHH_17645: selO - protein adenylyltransferase SelO, at 3,461,973 to 3,463,409 selO NOLOHH_17650: ydiE - Uncharacterized protein YdiE, at 3,463,413 to 3,463,604 ydiE NOLOHH_17655: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 3,463,736 to 3,464,782 aroH Position (kb) 3463 3464Strain fitness (log2 ratio) -1 0 1 2at 3462.525 kb on + strand, within selOat 3462.824 kb on + strand, within selOat 3463.460 kb on - strand, within ydiEat 3463.828 kb on - strandat 3463.889 kb on - strand, within aroHat 3464.093 kb on - strand, within aroHat 3464.093 kb on - strand, within aroHat 3464.125 kb on - strand, within aroHat 3464.164 kb on + strand, within aroHat 3464.291 kb on - strand, within aroHat 3464.448 kb on - strand, within aroH

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,462,525 + selO NOLOHH_17645 0.38 -0.1
3,462,824 + selO NOLOHH_17645 0.59 +0.5
3,463,460 - ydiE NOLOHH_17650 0.24 +1.8
3,463,828 - +1.8
3,463,889 - aroH NOLOHH_17655 0.15 -0.8
3,464,093 - aroH NOLOHH_17655 0.34 +1.2
3,464,093 - aroH NOLOHH_17655 0.34 +0.8
3,464,125 - aroH NOLOHH_17655 0.37 -0.8
3,464,164 + aroH NOLOHH_17655 0.41 +1.2
3,464,291 - aroH NOLOHH_17655 0.53 -0.4
3,464,448 - aroH NOLOHH_17655 0.68 -0.8

Or see this region's nucleotide sequence