Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15510

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegQ and parE are separated by 102 nucleotidesparE and NOLOHH_15510 are separated by 1 nucleotidesNOLOHH_15510 and yegP are separated by 253 nucleotidesyegP and baeR are separated by 190 nucleotides NOLOHH_15500: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 3,046,682 to 3,048,043 yegQ NOLOHH_15505: parE - type II toxin-antitoxin system RelE/ParE family toxin, at 3,048,146 to 3,048,442 parE NOLOHH_15510: NOLOHH_15510 - type II toxin-antitoxin system ParD family antitoxin, at 3,048,444 to 3,048,695 _15510 NOLOHH_15515: yegP - UPF0339 protein YegP, at 3,048,949 to 3,049,281 yegP NOLOHH_15520: baeR - two-component system response regulator BaeR, at 3,049,472 to 3,050,194 baeR Position (kb) 3048 3049Strain fitness (log2 ratio) -2 -1 0 1 2at 3047.762 kb on - strand, within yegQat 3047.762 kb on - strand, within yegQat 3048.296 kb on + strand, within parEat 3048.297 kb on - strand, within parEat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.766 kb on + strandat 3048.766 kb on + strandat 3048.773 kb on + strandat 3048.803 kb on + strandat 3048.807 kb on + strandat 3049.141 kb on - strand, within yegPat 3049.183 kb on - strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.203 kb on + strand, within yegPat 3049.257 kb on + strandat 3049.257 kb on + strandat 3049.322 kb on + strandat 3049.322 kb on + strandat 3049.342 kb on + strandat 3049.608 kb on - strand, within baeRat 3049.611 kb on - strand, within baeR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,047,762 - yegQ NOLOHH_15500 0.79 -0.1
3,047,762 - yegQ NOLOHH_15500 0.79 -0.3
3,048,296 + parE NOLOHH_15505 0.51 -1.6
3,048,297 - parE NOLOHH_15505 0.51 -1.5
3,048,733 + +0.9
3,048,733 + -0.3
3,048,733 + +0.3
3,048,733 + +0.7
3,048,733 + +1.0
3,048,733 + +0.3
3,048,733 + -1.5
3,048,766 + -1.5
3,048,766 + -0.5
3,048,773 + -0.1
3,048,803 + +0.3
3,048,807 + -0.7
3,049,141 - yegP NOLOHH_15515 0.58 -0.7
3,049,183 - yegP NOLOHH_15515 0.70 +2.6
3,049,184 + yegP NOLOHH_15515 0.71 -0.5
3,049,184 + yegP NOLOHH_15515 0.71 +1.9
3,049,184 + yegP NOLOHH_15515 0.71 -2.0
3,049,203 + yegP NOLOHH_15515 0.76 +0.3
3,049,257 + +2.6
3,049,257 + -0.5
3,049,322 + -0.7
3,049,322 + +1.3
3,049,342 + +0.6
3,049,608 - baeR NOLOHH_15520 0.19 +0.3
3,049,611 - baeR NOLOHH_15520 0.19 +0.6

Or see this region's nucleotide sequence