Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15360

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_15355 and NOLOHH_15360 are separated by 119 nucleotidesNOLOHH_15360 and NOLOHH_15365 are separated by 24 nucleotides NOLOHH_15355: NOLOHH_15355 - Site-specific recombinase, phage integrase family, at 3,019,752 to 3,021,110 _15355 NOLOHH_15360: NOLOHH_15360 - hypothetical protein, at 3,021,230 to 3,021,499 _15360 NOLOHH_15365: NOLOHH_15365 - hypothetical protein, at 3,021,524 to 3,022,465 _15365 Position (kb) 3021 3022Strain fitness (log2 ratio) -2 -1 0 1 2at 3020.277 kb on - strand, within NOLOHH_15355at 3020.459 kb on + strand, within NOLOHH_15355at 3020.465 kb on + strand, within NOLOHH_15355at 3020.529 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.749 kb on + strand, within NOLOHH_15355at 3021.053 kb on + strandat 3021.053 kb on + strandat 3021.053 kb on + strandat 3021.054 kb on - strandat 3021.054 kb on - strandat 3021.193 kb on + strandat 3021.223 kb on + strandat 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.304 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.490 kb on + strandat 3021.591 kb on + strandat 3021.647 kb on + strand, within NOLOHH_15365at 3021.668 kb on + strand, within NOLOHH_15365at 3021.709 kb on + strand, within NOLOHH_15365at 3021.767 kb on + strand, within NOLOHH_15365at 3021.768 kb on - strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.853 kb on + strand, within NOLOHH_15365at 3022.008 kb on + strand, within NOLOHH_15365at 3022.015 kb on + strand, within NOLOHH_15365at 3022.015 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.099 kb on - strand, within NOLOHH_15365at 3022.099 kb on - strand, within NOLOHH_15365at 3022.100 kb on + strand, within NOLOHH_15365at 3022.101 kb on - strand, within NOLOHH_15365at 3022.192 kb on + strand, within NOLOHH_15365

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,020,277 - NOLOHH_15355 0.39 +0.9
3,020,459 + NOLOHH_15355 0.52 +0.7
3,020,465 + NOLOHH_15355 0.52 -0.1
3,020,529 + NOLOHH_15355 0.57 +1.1
3,020,694 + NOLOHH_15355 0.69 -0.1
3,020,694 + NOLOHH_15355 0.69 -0.5
3,020,694 + NOLOHH_15355 0.69 +1.3
3,020,749 + NOLOHH_15355 0.73 +0.3
3,021,053 + +0.3
3,021,053 + -1.3
3,021,053 + +1.3
3,021,054 - +1.9
3,021,054 - +1.3
3,021,193 + +0.5
3,021,223 + +0.7
3,021,300 + NOLOHH_15360 0.26 +2.5
3,021,300 + NOLOHH_15360 0.26 +0.1
3,021,300 + NOLOHH_15360 0.26 +1.1
3,021,300 + NOLOHH_15360 0.26 -1.7
3,021,300 + NOLOHH_15360 0.26 +0.0
3,021,304 + NOLOHH_15360 0.27 +0.3
3,021,310 + NOLOHH_15360 0.30 -1.7
3,021,310 + NOLOHH_15360 0.30 +0.1
3,021,310 + NOLOHH_15360 0.30 -0.1
3,021,310 + NOLOHH_15360 0.30 +0.9
3,021,310 + NOLOHH_15360 0.30 +0.3
3,021,310 + NOLOHH_15360 0.30 +0.0
3,021,310 + NOLOHH_15360 0.30 +0.1
3,021,424 + NOLOHH_15360 0.72 -0.8
3,021,424 + NOLOHH_15360 0.72 -1.0
3,021,424 + NOLOHH_15360 0.72 +0.6
3,021,424 + NOLOHH_15360 0.72 -0.5
3,021,424 + NOLOHH_15360 0.72 -1.7
3,021,490 + +0.3
3,021,591 + -0.2
3,021,647 + NOLOHH_15365 0.13 -0.3
3,021,668 + NOLOHH_15365 0.15 -0.3
3,021,709 + NOLOHH_15365 0.20 +0.7
3,021,767 + NOLOHH_15365 0.26 -0.8
3,021,768 - NOLOHH_15365 0.26 -0.7
3,021,792 + NOLOHH_15365 0.28 -0.5
3,021,792 + NOLOHH_15365 0.28 +0.3
3,021,792 + NOLOHH_15365 0.28 -0.4
3,021,853 + NOLOHH_15365 0.35 +0.2
3,022,008 + NOLOHH_15365 0.51 +0.3
3,022,015 + NOLOHH_15365 0.52 -1.3
3,022,015 + NOLOHH_15365 0.52 +1.1
3,022,098 + NOLOHH_15365 0.61 +0.7
3,022,098 + NOLOHH_15365 0.61 -1.1
3,022,098 + NOLOHH_15365 0.61 -0.7
3,022,098 + NOLOHH_15365 0.61 +1.3
3,022,099 - NOLOHH_15365 0.61 -2.3
3,022,099 - NOLOHH_15365 0.61 +0.3
3,022,100 + NOLOHH_15365 0.61 -2.1
3,022,101 - NOLOHH_15365 0.61 +0.9
3,022,192 + NOLOHH_15365 0.71 -0.7

Or see this region's nucleotide sequence