Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napG are separated by 6 nucleotides napG and napH overlap by 14 nucleotides napH and napB overlap by 4 nucleotides
NOLOHH_14830: napA - nitrate reductase catalytic subunit NapA, at 2,902,837 to 2,905,323
napA
NOLOHH_14835: napG - ferredoxin-type protein NapG, at 2,905,330 to 2,906,025
napG
NOLOHH_14840: napH - quinol dehydrogenase ferredoxin subunit NapH, at 2,906,012 to 2,906,875
napH
NOLOHH_14845: napB - nitrate reductase cytochrome c-type subunit, at 2,906,872 to 2,907,321
napB
Position (kb)
2905
2906
2907 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2904.522 kb on - strand, within napA at 2904.558 kb on - strand, within napA at 2904.610 kb on + strand, within napA at 2904.623 kb on - strand, within napA at 2904.706 kb on + strand, within napA at 2904.706 kb on + strand, within napA at 2904.734 kb on - strand, within napA at 2904.784 kb on + strand, within napA at 2904.865 kb on + strand, within napA at 2904.888 kb on + strand, within napA at 2904.888 kb on + strand, within napA at 2904.895 kb on + strand, within napA at 2904.895 kb on + strand, within napA at 2904.971 kb on - strand, within napA at 2905.207 kb on + strand at 2905.207 kb on + strand at 2905.207 kb on + strand at 2905.207 kb on + strand at 2905.208 kb on - strand at 2905.208 kb on - strand at 2905.321 kb on + strand at 2905.321 kb on + strand at 2905.321 kb on + strand at 2905.321 kb on + strand at 2905.329 kb on + strand at 2905.329 kb on + strand at 2905.329 kb on + strand at 2905.329 kb on + strand at 2905.330 kb on - strand at 2905.430 kb on + strand, within napG at 2905.600 kb on + strand, within napG at 2905.600 kb on + strand, within napG at 2905.839 kb on + strand, within napG at 2905.900 kb on - strand, within napG at 2905.913 kb on + strand, within napG at 2905.914 kb on - strand, within napG at 2905.974 kb on - strand at 2905.974 kb on - strand at 2906.023 kb on + strand at 2906.092 kb on - strand at 2906.092 kb on - strand at 2906.171 kb on + strand, within napH at 2906.171 kb on + strand, within napH at 2906.171 kb on + strand, within napH at 2906.179 kb on + strand, within napH at 2906.284 kb on + strand, within napH at 2906.298 kb on - strand, within napH at 2906.464 kb on - strand, within napH at 2906.577 kb on + strand, within napH at 2906.630 kb on + strand, within napH at 2906.736 kb on + strand, within napH at 2906.736 kb on + strand, within napH at 2906.737 kb on - strand, within napH at 2906.832 kb on + strand at 2906.833 kb on - strand at 2906.836 kb on + strand at 2906.836 kb on + strand at 2906.837 kb on - strand at 2906.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,904,522 - napA NOLOHH_14830 0.68 +0.4 2,904,558 - napA NOLOHH_14830 0.69 -1.0 2,904,610 + napA NOLOHH_14830 0.71 -2.5 2,904,623 - napA NOLOHH_14830 0.72 +0.4 2,904,706 + napA NOLOHH_14830 0.75 -0.5 2,904,706 + napA NOLOHH_14830 0.75 +0.0 2,904,734 - napA NOLOHH_14830 0.76 +0.0 2,904,784 + napA NOLOHH_14830 0.78 -0.3 2,904,865 + napA NOLOHH_14830 0.82 -0.1 2,904,888 + napA NOLOHH_14830 0.82 +0.9 2,904,888 + napA NOLOHH_14830 0.82 +1.6 2,904,895 + napA NOLOHH_14830 0.83 -1.2 2,904,895 + napA NOLOHH_14830 0.83 -0.9 2,904,971 - napA NOLOHH_14830 0.86 +0.4 2,905,207 + -0.6 2,905,207 + -0.2 2,905,207 + -1.6 2,905,207 + -0.6 2,905,208 - -0.4 2,905,208 - -0.2 2,905,321 + +0.6 2,905,321 + +0.9 2,905,321 + +1.4 2,905,321 + -0.8 2,905,329 + -0.1 2,905,329 + +0.1 2,905,329 + -0.1 2,905,329 + -1.0 2,905,330 - -0.1 2,905,430 + napG NOLOHH_14835 0.14 +1.0 2,905,600 + napG NOLOHH_14835 0.39 +0.2 2,905,600 + napG NOLOHH_14835 0.39 +1.7 2,905,839 + napG NOLOHH_14835 0.73 +0.4 2,905,900 - napG NOLOHH_14835 0.82 +0.8 2,905,913 + napG NOLOHH_14835 0.84 +2.1 2,905,914 - napG NOLOHH_14835 0.84 -1.0 2,905,974 - -0.8 2,905,974 - +0.1 2,906,023 + -0.8 2,906,092 - +0.4 2,906,092 - -1.2 2,906,171 + napH NOLOHH_14840 0.18 +0.5 2,906,171 + napH NOLOHH_14840 0.18 +0.0 2,906,171 + napH NOLOHH_14840 0.18 -1.0 2,906,179 + napH NOLOHH_14840 0.19 +0.4 2,906,284 + napH NOLOHH_14840 0.31 +0.9 2,906,298 - napH NOLOHH_14840 0.33 +2.9 2,906,464 - napH NOLOHH_14840 0.52 -0.4 2,906,577 + napH NOLOHH_14840 0.65 -0.1 2,906,630 + napH NOLOHH_14840 0.72 -1.2 2,906,736 + napH NOLOHH_14840 0.84 +0.4 2,906,736 + napH NOLOHH_14840 0.84 +0.4 2,906,737 - napH NOLOHH_14840 0.84 -2.6 2,906,832 + -0.6 2,906,833 - +0.4 2,906,836 + +0.8 2,906,836 + +3.2 2,906,837 - -0.6 2,906,842 - +1.1
Or see this region's nucleotide sequence