Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and ais are separated by 289 nucleotides ais and nudI are separated by 38 nucleotides nudI and yfaZ are separated by 278 nucleotides yfaZ and yfaY are separated by 99 nucleotides
NOLOHH_14620: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,850,514 to 2,851,671
arnB
NOLOHH_14625: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 2,851,961 to 2,852,563
ais
NOLOHH_14630: nudI - nucleoside triphosphatase NudI, at 2,852,602 to 2,853,027
nudI
NOLOHH_14635: yfaZ - Outer membrane protein YfaZ, at 2,853,306 to 2,853,848
yfaZ
NOLOHH_14640: yfaY - nicotinamide mononucleotide deamidase-related protein YfaY, at 2,853,948 to 2,855,150
yfaY
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1 at 2851.700 kb on - strand at 2851.715 kb on + strand at 2851.777 kb on - strand at 2852.063 kb on - strand, within ais at 2852.081 kb on - strand, within ais at 2852.195 kb on - strand, within ais at 2852.422 kb on + strand, within ais at 2852.450 kb on + strand, within ais at 2852.648 kb on - strand, within nudI at 2852.688 kb on - strand, within nudI at 2852.760 kb on - strand, within nudI at 2852.787 kb on - strand, within nudI at 2852.978 kb on + strand, within nudI at 2852.979 kb on - strand, within nudI at 2853.007 kb on + strand at 2853.040 kb on + strand at 2853.042 kb on + strand at 2853.081 kb on + strand at 2853.126 kb on - strand at 2853.211 kb on + strand at 2853.254 kb on - strand at 2853.282 kb on + strand at 2853.399 kb on + strand, within yfaZ at 2853.399 kb on + strand, within yfaZ at 2853.400 kb on - strand, within yfaZ at 2853.654 kb on + strand, within yfaZ at 2853.660 kb on + strand, within yfaZ at 2853.723 kb on + strand, within yfaZ at 2853.822 kb on + strand at 2853.822 kb on + strand at 2853.823 kb on - strand at 2853.916 kb on + strand at 2853.953 kb on - strand at 2853.989 kb on - strand at 2854.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,851,700 - -0.1 2,851,715 + +0.4 2,851,777 - -0.5 2,852,063 - ais NOLOHH_14625 0.17 -0.2 2,852,081 - ais NOLOHH_14625 0.20 -1.2 2,852,195 - ais NOLOHH_14625 0.39 -0.6 2,852,422 + ais NOLOHH_14625 0.76 +0.5 2,852,450 + ais NOLOHH_14625 0.81 -0.4 2,852,648 - nudI NOLOHH_14630 0.11 -0.6 2,852,688 - nudI NOLOHH_14630 0.20 +1.6 2,852,760 - nudI NOLOHH_14630 0.37 -2.2 2,852,787 - nudI NOLOHH_14630 0.43 -0.2 2,852,978 + nudI NOLOHH_14630 0.88 -1.6 2,852,979 - nudI NOLOHH_14630 0.88 +0.4 2,853,007 + +1.4 2,853,040 + +0.4 2,853,042 + +0.9 2,853,081 + -1.6 2,853,126 - -0.6 2,853,211 + -0.3 2,853,254 - +0.6 2,853,282 + +0.4 2,853,399 + yfaZ NOLOHH_14635 0.17 -0.8 2,853,399 + yfaZ NOLOHH_14635 0.17 -0.2 2,853,400 - yfaZ NOLOHH_14635 0.17 +0.4 2,853,654 + yfaZ NOLOHH_14635 0.64 -0.6 2,853,660 + yfaZ NOLOHH_14635 0.65 -0.6 2,853,723 + yfaZ NOLOHH_14635 0.77 +0.4 2,853,822 + +0.6 2,853,822 + +0.0 2,853,823 - -0.1 2,853,916 + -0.1 2,853,953 - +0.4 2,853,989 - -0.3 2,854,011 - -0.6
Or see this region's nucleotide sequence