Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14535

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_14530 and NOLOHH_14535 are separated by 103 nucleotidesNOLOHH_14535 and NOLOHH_14540 are separated by 190 nucleotides NOLOHH_14530: NOLOHH_14530 - ElaD/SseL family deubiquitinase, at 2,833,647 to 2,834,018 _14530 NOLOHH_14535: NOLOHH_14535 - ElaD/SseL family deubiquitinase, at 2,834,122 to 2,834,865 _14535 NOLOHH_14540: NOLOHH_14540 - ribonuclease BN, at 2,835,056 to 2,835,973 _14540 Position (kb) 2834 2835Strain fitness (log2 ratio) -2 -1 0 1at 2833.406 kb on + strandat 2833.410 kb on + strandat 2834.289 kb on + strand, within NOLOHH_14535at 2834.506 kb on + strand, within NOLOHH_14535at 2834.843 kb on + strandat 2834.955 kb on + strandat 2834.956 kb on - strandat 2834.976 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strandat 2835.047 kb on + strandat 2835.057 kb on + strandat 2835.123 kb on - strandat 2835.176 kb on + strand, within NOLOHH_14540at 2835.224 kb on - strand, within NOLOHH_14540at 2835.229 kb on + strand, within NOLOHH_14540at 2835.264 kb on - strand, within NOLOHH_14540at 2835.264 kb on - strand, within NOLOHH_14540at 2835.266 kb on - strand, within NOLOHH_14540at 2835.380 kb on + strand, within NOLOHH_14540at 2835.381 kb on - strand, within NOLOHH_14540at 2835.384 kb on + strand, within NOLOHH_14540at 2835.441 kb on - strand, within NOLOHH_14540at 2835.498 kb on - strand, within NOLOHH_14540at 2835.498 kb on - strand, within NOLOHH_14540at 2835.700 kb on - strand, within NOLOHH_14540at 2835.700 kb on - strand, within NOLOHH_14540at 2835.730 kb on + strand, within NOLOHH_14540at 2835.730 kb on + strand, within NOLOHH_14540at 2835.731 kb on - strand, within NOLOHH_14540at 2835.833 kb on + strand, within NOLOHH_14540

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,833,406 + -0.2
2,833,410 + +1.6
2,834,289 + NOLOHH_14535 0.22 +0.0
2,834,506 + NOLOHH_14535 0.52 -0.4
2,834,843 + +0.4
2,834,955 + -0.2
2,834,956 - -0.2
2,834,976 + +0.8
2,834,996 + +0.7
2,834,996 + +0.2
2,834,996 + +0.9
2,835,047 + +1.0
2,835,057 + -0.6
2,835,123 - +0.5
2,835,176 + NOLOHH_14540 0.13 -1.6
2,835,224 - NOLOHH_14540 0.18 +1.4
2,835,229 + NOLOHH_14540 0.19 -0.4
2,835,264 - NOLOHH_14540 0.23 +0.0
2,835,264 - NOLOHH_14540 0.23 +0.4
2,835,266 - NOLOHH_14540 0.23 -0.9
2,835,380 + NOLOHH_14540 0.35 +0.4
2,835,381 - NOLOHH_14540 0.35 -1.2
2,835,384 + NOLOHH_14540 0.36 +0.4
2,835,441 - NOLOHH_14540 0.42 +0.7
2,835,498 - NOLOHH_14540 0.48 +1.7
2,835,498 - NOLOHH_14540 0.48 +1.2
2,835,700 - NOLOHH_14540 0.70 -2.2
2,835,700 - NOLOHH_14540 0.70 -0.2
2,835,730 + NOLOHH_14540 0.73 -1.6
2,835,730 + NOLOHH_14540 0.73 +0.2
2,835,731 - NOLOHH_14540 0.74 +0.9
2,835,833 + NOLOHH_14540 0.85 +0.8

Or see this region's nucleotide sequence