Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14315

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttruA and NOLOHH_14310 are separated by 82 nucleotidesNOLOHH_14310 and accD are separated by 155 nucleotidesaccD and folC are separated by 69 nucleotides NOLOHH_14305: truA - tRNA pseudouridine(38-40) synthase TruA, at 2,786,356 to 2,787,168 truA NOLOHH_14310: NOLOHH_14310 - Protein DedA, at 2,787,251 to 2,787,910 _14310 NOLOHH_14315: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,788,066 to 2,788,980 accD NOLOHH_14320: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,789,050 to 2,790,318 folC Position (kb) 2788 2789Strain fitness (log2 ratio) -3 -2 -1 0 1at 2787.091 kb on + strandat 2787.092 kb on - strandat 2787.122 kb on - strandat 2787.175 kb on + strandat 2787.175 kb on + strandat 2787.176 kb on - strandat 2787.208 kb on + strandat 2787.208 kb on + strandat 2787.209 kb on - strandat 2787.209 kb on - strandat 2787.209 kb on - strandat 2787.212 kb on + strandat 2787.213 kb on - strandat 2787.213 kb on - strandat 2787.213 kb on - strandat 2787.233 kb on + strandat 2787.242 kb on + strandat 2787.242 kb on + strandat 2787.243 kb on - strandat 2787.251 kb on - strandat 2787.281 kb on - strandat 2787.323 kb on + strand, within NOLOHH_14310at 2787.324 kb on - strand, within NOLOHH_14310at 2787.338 kb on + strand, within NOLOHH_14310at 2787.339 kb on - strand, within NOLOHH_14310at 2787.466 kb on + strand, within NOLOHH_14310at 2787.518 kb on + strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.519 kb on - strand, within NOLOHH_14310at 2787.587 kb on + strand, within NOLOHH_14310at 2787.725 kb on + strand, within NOLOHH_14310at 2787.726 kb on - strand, within NOLOHH_14310at 2787.726 kb on - strand, within NOLOHH_14310at 2787.768 kb on - strand, within NOLOHH_14310at 2787.814 kb on + strand, within NOLOHH_14310at 2787.847 kb on + strandat 2787.870 kb on + strandat 2787.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,787,091 + -2.8
2,787,092 - +0.4
2,787,122 - +0.4
2,787,175 + -2.0
2,787,175 + +1.0
2,787,176 - +0.9
2,787,208 + -2.0
2,787,208 + -1.1
2,787,209 - +0.7
2,787,209 - +0.8
2,787,209 - -1.0
2,787,212 + -0.1
2,787,213 - +1.4
2,787,213 - +0.4
2,787,213 - +1.4
2,787,233 + +1.4
2,787,242 + -0.6
2,787,242 + +0.4
2,787,243 - -1.2
2,787,251 - +0.1
2,787,281 - +1.0
2,787,323 + NOLOHH_14310 0.11 +1.4
2,787,324 - NOLOHH_14310 0.11 -0.3
2,787,338 + NOLOHH_14310 0.13 +0.9
2,787,339 - NOLOHH_14310 0.13 +0.7
2,787,466 + NOLOHH_14310 0.33 -0.2
2,787,518 + NOLOHH_14310 0.40 -1.3
2,787,519 - NOLOHH_14310 0.41 +0.9
2,787,519 - NOLOHH_14310 0.41 -1.6
2,787,519 - NOLOHH_14310 0.41 +0.4
2,787,587 + NOLOHH_14310 0.51 -0.6
2,787,725 + NOLOHH_14310 0.72 -0.3
2,787,726 - NOLOHH_14310 0.72 +0.4
2,787,726 - NOLOHH_14310 0.72 -0.2
2,787,768 - NOLOHH_14310 0.78 -2.2
2,787,814 + NOLOHH_14310 0.85 -0.0
2,787,847 + +0.2
2,787,870 + +0.4
2,787,871 - -1.8

Or see this region's nucleotide sequence