Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt usg and truA overlap by 1 nucleotides truA and NOLOHH_14310 are separated by 82 nucleotides NOLOHH_14310 and accD are separated by 155 nucleotides
NOLOHH_14300: usg - aspartate-semialdehyde dehydrogenase, at 2,785,343 to 2,786,356
usg
NOLOHH_14305: truA - tRNA pseudouridine(38-40) synthase TruA, at 2,786,356 to 2,787,168
truA
NOLOHH_14310: NOLOHH_14310 - Protein DedA, at 2,787,251 to 2,787,910
_14310
NOLOHH_14315: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,788,066 to 2,788,980
accD
Position (kb)
2787
2788 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2786.316 kb on + strand at 2786.316 kb on + strand at 2786.345 kb on + strand at 2786.351 kb on + strand at 2786.351 kb on + strand at 2786.354 kb on + strand at 2786.354 kb on + strand at 2786.354 kb on + strand at 2786.419 kb on - strand at 2786.419 kb on - strand at 2786.419 kb on - strand at 2786.422 kb on + strand at 2786.422 kb on + strand at 2786.530 kb on - strand, within truA at 2786.663 kb on + strand, within truA at 2786.664 kb on - strand, within truA at 2786.722 kb on + strand, within truA at 2786.889 kb on + strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.899 kb on - strand, within truA at 2786.899 kb on - strand, within truA at 2786.920 kb on + strand, within truA at 2786.921 kb on - strand, within truA at 2786.930 kb on + strand, within truA at 2786.934 kb on + strand, within truA at 2786.937 kb on + strand, within truA at 2786.955 kb on - strand, within truA at 2786.961 kb on + strand, within truA at 2786.961 kb on + strand, within truA at 2786.974 kb on - strand, within truA at 2787.091 kb on + strand at 2787.092 kb on - strand at 2787.122 kb on - strand at 2787.175 kb on + strand at 2787.175 kb on + strand at 2787.176 kb on - strand at 2787.208 kb on + strand at 2787.208 kb on + strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.212 kb on + strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.233 kb on + strand at 2787.242 kb on + strand at 2787.242 kb on + strand at 2787.243 kb on - strand at 2787.251 kb on - strand at 2787.281 kb on - strand at 2787.323 kb on + strand, within NOLOHH_14310 at 2787.324 kb on - strand, within NOLOHH_14310 at 2787.338 kb on + strand, within NOLOHH_14310 at 2787.339 kb on - strand, within NOLOHH_14310 at 2787.466 kb on + strand, within NOLOHH_14310 at 2787.518 kb on + strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.587 kb on + strand, within NOLOHH_14310 at 2787.725 kb on + strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.768 kb on - strand, within NOLOHH_14310 at 2787.814 kb on + strand, within NOLOHH_14310 at 2787.847 kb on + strand at 2787.870 kb on + strand at 2787.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,786,316 + -1.2 2,786,316 + +0.9 2,786,345 + -1.2 2,786,351 + -1.2 2,786,351 + +1.1 2,786,354 + +0.8 2,786,354 + -0.6 2,786,354 + +0.2 2,786,419 - +0.4 2,786,419 - -0.6 2,786,419 - +1.4 2,786,422 + -0.2 2,786,422 + -0.2 2,786,530 - truA NOLOHH_14305 0.21 +1.4 2,786,663 + truA NOLOHH_14305 0.38 +1.4 2,786,664 - truA NOLOHH_14305 0.38 +0.4 2,786,722 + truA NOLOHH_14305 0.45 +0.4 2,786,889 + truA NOLOHH_14305 0.66 -0.1 2,786,896 - truA NOLOHH_14305 0.66 +0.9 2,786,896 - truA NOLOHH_14305 0.66 -0.9 2,786,896 - truA NOLOHH_14305 0.66 +0.4 2,786,896 - truA NOLOHH_14305 0.66 -0.6 2,786,899 - truA NOLOHH_14305 0.67 -1.0 2,786,899 - truA NOLOHH_14305 0.67 -2.0 2,786,920 + truA NOLOHH_14305 0.69 +0.4 2,786,921 - truA NOLOHH_14305 0.69 +0.4 2,786,930 + truA NOLOHH_14305 0.71 -1.6 2,786,934 + truA NOLOHH_14305 0.71 +0.4 2,786,937 + truA NOLOHH_14305 0.71 +0.4 2,786,955 - truA NOLOHH_14305 0.74 -1.2 2,786,961 + truA NOLOHH_14305 0.74 +0.9 2,786,961 + truA NOLOHH_14305 0.74 -0.6 2,786,974 - truA NOLOHH_14305 0.76 -0.2 2,787,091 + -2.8 2,787,092 - +0.4 2,787,122 - +0.4 2,787,175 + -2.0 2,787,175 + +1.0 2,787,176 - +0.9 2,787,208 + -2.0 2,787,208 + -1.1 2,787,209 - +0.7 2,787,209 - +0.8 2,787,209 - -1.0 2,787,212 + -0.1 2,787,213 - +1.4 2,787,213 - +0.4 2,787,213 - +1.4 2,787,233 + +1.4 2,787,242 + -0.6 2,787,242 + +0.4 2,787,243 - -1.2 2,787,251 - +0.1 2,787,281 - +1.0 2,787,323 + NOLOHH_14310 0.11 +1.4 2,787,324 - NOLOHH_14310 0.11 -0.3 2,787,338 + NOLOHH_14310 0.13 +0.9 2,787,339 - NOLOHH_14310 0.13 +0.7 2,787,466 + NOLOHH_14310 0.33 -0.2 2,787,518 + NOLOHH_14310 0.40 -1.3 2,787,519 - NOLOHH_14310 0.41 +0.9 2,787,519 - NOLOHH_14310 0.41 -1.6 2,787,519 - NOLOHH_14310 0.41 +0.4 2,787,587 + NOLOHH_14310 0.51 -0.6 2,787,725 + NOLOHH_14310 0.72 -0.3 2,787,726 - NOLOHH_14310 0.72 +0.4 2,787,726 - NOLOHH_14310 0.72 -0.2 2,787,768 - NOLOHH_14310 0.78 -2.2 2,787,814 + NOLOHH_14310 0.85 -0.0 2,787,847 + +0.2 2,787,870 + +0.4 2,787,871 - -1.8
Or see this region's nucleotide sequence