Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13875

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntptsI and ptsH are separated by 44 nucleotidesptsH and cysK are separated by 383 nucleotides NOLOHH_13870: ptsI - phosphoenolpyruvate-protein phosphotransferase PtsI, at 2,694,766 to 2,696,493 ptsI NOLOHH_13875: ptsH - phosphocarrier protein Hpr, at 2,696,538 to 2,696,795 ptsH NOLOHH_13880: cysK - cysteine synthase A, at 2,697,179 to 2,698,150 cysK Position (kb) 2696 2697Strain fitness (log2 ratio) -2 -1 0 1at 2696.867 kb on - strandat 2696.867 kb on - strandat 2696.867 kb on - strandat 2697.067 kb on + strandat 2697.068 kb on - strandat 2697.140 kb on + strandat 2697.231 kb on - strandat 2697.231 kb on - strandat 2697.231 kb on - strandat 2697.300 kb on - strand, within cysKat 2697.300 kb on - strand, within cysKat 2697.338 kb on - strand, within cysKat 2697.440 kb on - strand, within cysKat 2697.584 kb on - strand, within cysKat 2697.634 kb on + strand, within cysKat 2697.635 kb on - strand, within cysKat 2697.635 kb on - strand, within cysKat 2697.638 kb on + strand, within cysKat 2697.639 kb on - strand, within cysKat 2697.639 kb on - strand, within cysKat 2697.639 kb on - strand, within cysKat 2697.739 kb on - strand, within cysKat 2697.739 kb on - strand, within cysK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,696,867 - -1.5
2,696,867 - +0.3
2,696,867 - -1.2
2,697,067 + +0.9
2,697,068 - +0.3
2,697,140 + +1.3
2,697,231 - -1.2
2,697,231 - +0.5
2,697,231 - +0.7
2,697,300 - cysK NOLOHH_13880 0.12 -0.1
2,697,300 - cysK NOLOHH_13880 0.12 -0.4
2,697,338 - cysK NOLOHH_13880 0.16 -0.1
2,697,440 - cysK NOLOHH_13880 0.27 +0.9
2,697,584 - cysK NOLOHH_13880 0.42 +0.7
2,697,634 + cysK NOLOHH_13880 0.47 -1.7
2,697,635 - cysK NOLOHH_13880 0.47 -2.2
2,697,635 - cysK NOLOHH_13880 0.47 +0.1
2,697,638 + cysK NOLOHH_13880 0.47 -0.7
2,697,639 - cysK NOLOHH_13880 0.47 -0.7
2,697,639 - cysK NOLOHH_13880 0.47 -0.5
2,697,639 - cysK NOLOHH_13880 0.47 +0.9
2,697,739 - cysK NOLOHH_13880 0.58 -0.2
2,697,739 - cysK NOLOHH_13880 0.58 -0.8

Or see this region's nucleotide sequence