Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13865

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfeK and pdxK are separated by 104 nucleotidespdxK and crr are separated by 41 nucleotidescrr and ptsI are separated by 40 nucleotides NOLOHH_13855: yfeK - Uncharacterized protein YfeK, at 2,692,850 to 2,693,218 yfeK NOLOHH_13860: pdxK - pyridoxine/pyridoxal/pyridoxamine kinase, at 2,693,323 to 2,694,174 pdxK NOLOHH_13865: crr - PTS glucose transporter subunit IIA, at 2,694,216 to 2,694,725 crr NOLOHH_13870: ptsI - phosphoenolpyruvate-protein phosphotransferase PtsI, at 2,694,766 to 2,696,493 ptsI Position (kb) 2694 2695Strain fitness (log2 ratio) -1 0 1 2at 2693.230 kb on - strandat 2693.328 kb on + strandat 2693.500 kb on + strand, within pdxKat 2693.501 kb on - strand, within pdxKat 2693.608 kb on + strand, within pdxKat 2693.888 kb on + strand, within pdxKat 2693.888 kb on + strand, within pdxKat 2694.218 kb on - strandat 2694.306 kb on - strand, within crrat 2694.744 kb on - strandat 2694.812 kb on - strandat 2694.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,693,230 - +0.3
2,693,328 + +0.5
2,693,500 + pdxK NOLOHH_13860 0.21 -0.7
2,693,501 - pdxK NOLOHH_13860 0.21 +1.3
2,693,608 + pdxK NOLOHH_13860 0.33 +2.3
2,693,888 + pdxK NOLOHH_13860 0.66 -0.8
2,693,888 + pdxK NOLOHH_13860 0.66 -0.2
2,694,218 - +0.7
2,694,306 - crr NOLOHH_13865 0.18 -1.1
2,694,744 - -0.1
2,694,812 - -1.2
2,694,812 - +1.9

Or see this region's nucleotide sequence