Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13715

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpta and eutM overlap by 4 nucleotideseutM and eutN are separated by 106 nucleotideseutN and eutE are separated by 11 nucleotides NOLOHH_13710: pta - phosphate acetyltransferase, at 2,665,232 to 2,666,248 pta NOLOHH_13715: eutM - ethanolamine utilization microcompartment protein EutM, at 2,666,245 to 2,666,580 eutM NOLOHH_13720: eutN - ethanolamine utilization microcompartment protein EutN, at 2,666,687 to 2,666,974 eutN NOLOHH_13725: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 2,666,986 to 2,668,389 eutE Position (kb) 2666 2667Strain fitness (log2 ratio) -1 0 1 2at 2665.328 kb on + strandat 2665.328 kb on + strandat 2665.329 kb on - strandat 2665.329 kb on - strandat 2665.333 kb on - strandat 2665.663 kb on + strand, within ptaat 2665.663 kb on + strand, within ptaat 2665.664 kb on - strand, within ptaat 2665.700 kb on + strand, within ptaat 2665.700 kb on + strand, within ptaat 2665.700 kb on + strand, within ptaat 2665.944 kb on + strand, within ptaat 2665.945 kb on - strand, within ptaat 2665.945 kb on - strand, within ptaat 2666.053 kb on + strand, within ptaat 2666.110 kb on - strand, within ptaat 2666.110 kb on - strand, within ptaat 2666.110 kb on - strand, within ptaat 2666.152 kb on + strandat 2666.152 kb on + strandat 2666.153 kb on - strandat 2666.153 kb on - strandat 2666.153 kb on - strandat 2666.297 kb on + strand, within eutMat 2666.409 kb on + strand, within eutMat 2666.409 kb on + strand, within eutMat 2666.496 kb on - strand, within eutMat 2666.501 kb on + strand, within eutMat 2666.501 kb on + strand, within eutMat 2666.631 kb on + strandat 2666.632 kb on - strandat 2666.647 kb on + strandat 2666.660 kb on + strandat 2666.669 kb on + strandat 2666.723 kb on - strand, within eutNat 2666.887 kb on + strand, within eutNat 2666.973 kb on - strandat 2667.134 kb on + strand, within eutEat 2667.344 kb on + strand, within eutEat 2667.410 kb on + strand, within eutEat 2667.411 kb on - strand, within eutEat 2667.414 kb on + strand, within eutEat 2667.415 kb on - strand, within eutEat 2667.502 kb on - strand, within eutEat 2667.549 kb on - strand, within eutE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,665,328 + -0.3
2,665,328 + -0.5
2,665,329 - +0.3
2,665,329 - +0.9
2,665,333 - -1.1
2,665,663 + pta NOLOHH_13710 0.42 -0.3
2,665,663 + pta NOLOHH_13710 0.42 -0.8
2,665,664 - pta NOLOHH_13710 0.42 +0.3
2,665,700 + pta NOLOHH_13710 0.46 -0.5
2,665,700 + pta NOLOHH_13710 0.46 +1.2
2,665,700 + pta NOLOHH_13710 0.46 +0.4
2,665,944 + pta NOLOHH_13710 0.70 -0.9
2,665,945 - pta NOLOHH_13710 0.70 -0.7
2,665,945 - pta NOLOHH_13710 0.70 -0.3
2,666,053 + pta NOLOHH_13710 0.81 +1.1
2,666,110 - pta NOLOHH_13710 0.86 +0.3
2,666,110 - pta NOLOHH_13710 0.86 +0.3
2,666,110 - pta NOLOHH_13710 0.86 -1.7
2,666,152 + +0.5
2,666,152 + -0.0
2,666,153 - +1.5
2,666,153 - -1.5
2,666,153 - +0.3
2,666,297 + eutM NOLOHH_13715 0.15 +0.7
2,666,409 + eutM NOLOHH_13715 0.49 +1.3
2,666,409 + eutM NOLOHH_13715 0.49 +0.3
2,666,496 - eutM NOLOHH_13715 0.75 +0.9
2,666,501 + eutM NOLOHH_13715 0.76 -0.4
2,666,501 + eutM NOLOHH_13715 0.76 -0.6
2,666,631 + +1.0
2,666,632 - +0.3
2,666,647 + -0.1
2,666,660 + +1.1
2,666,669 + +0.3
2,666,723 - eutN NOLOHH_13720 0.12 +1.5
2,666,887 + eutN NOLOHH_13720 0.69 +0.3
2,666,973 - +1.3
2,667,134 + eutE NOLOHH_13725 0.11 +0.7
2,667,344 + eutE NOLOHH_13725 0.25 -0.3
2,667,410 + eutE NOLOHH_13725 0.30 -0.4
2,667,411 - eutE NOLOHH_13725 0.30 -0.4
2,667,414 + eutE NOLOHH_13725 0.30 +1.5
2,667,415 - eutE NOLOHH_13725 0.31 +1.9
2,667,502 - eutE NOLOHH_13725 0.37 +0.4
2,667,549 - eutE NOLOHH_13725 0.40 +0.3

Or see this region's nucleotide sequence