Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13670

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaegA and nudK are separated by 67 nucleotidesnudK and ypfG are separated by 125 nucleotidesypfG and tkt are separated by 75 nucleotides NOLOHH_13660: aegA - formate-dependent uric acid utilization protein AegA, at 2,653,231 to 2,655,210 aegA NOLOHH_13665: nudK - GDP-mannose pyrophosphatase NudK, at 2,655,278 to 2,655,853 nudK NOLOHH_13670: ypfG - Uncharacterized protein YpfG, at 2,655,979 to 2,657,022 ypfG NOLOHH_13675: tkt - transketolase, at 2,657,098 to 2,659,101 tkt Position (kb) 2655 2656 2657 2658Strain fitness (log2 ratio) -2 -1 0 1 2at 2655.211 kb on + strandat 2655.243 kb on + strandat 2655.244 kb on - strandat 2655.244 kb on - strandat 2655.244 kb on - strandat 2655.244 kb on - strandat 2655.246 kb on + strandat 2655.246 kb on + strandat 2655.248 kb on + strandat 2655.249 kb on - strandat 2655.249 kb on - strandat 2655.249 kb on - strandat 2655.249 kb on - strandat 2655.326 kb on + strandat 2655.327 kb on - strandat 2655.346 kb on + strand, within nudKat 2655.346 kb on + strand, within nudKat 2655.346 kb on + strand, within nudKat 2655.347 kb on - strand, within nudKat 2655.347 kb on - strand, within nudKat 2655.347 kb on - strand, within nudKat 2655.380 kb on - strand, within nudKat 2655.401 kb on + strand, within nudKat 2655.435 kb on - strand, within nudKat 2655.435 kb on - strand, within nudKat 2655.565 kb on + strand, within nudKat 2655.565 kb on + strand, within nudKat 2655.632 kb on + strand, within nudKat 2655.632 kb on + strand, within nudKat 2655.632 kb on + strand, within nudKat 2655.632 kb on + strand, within nudKat 2655.632 kb on + strand, within nudKat 2655.633 kb on - strand, within nudKat 2655.633 kb on - strand, within nudKat 2655.634 kb on + strand, within nudKat 2655.634 kb on + strand, within nudKat 2655.634 kb on + strand, within nudKat 2655.683 kb on + strand, within nudKat 2655.683 kb on + strand, within nudKat 2655.733 kb on + strand, within nudKat 2655.793 kb on - strand, within nudKat 2656.083 kb on + strandat 2656.083 kb on + strandat 2656.083 kb on + strandat 2656.084 kb on - strand, within ypfGat 2656.084 kb on - strand, within ypfGat 2656.087 kb on - strand, within ypfGat 2656.181 kb on + strand, within ypfGat 2656.182 kb on - strand, within ypfGat 2656.185 kb on + strand, within ypfGat 2656.185 kb on + strand, within ypfGat 2656.186 kb on - strand, within ypfGat 2656.250 kb on + strand, within ypfGat 2656.250 kb on + strand, within ypfGat 2656.251 kb on - strand, within ypfGat 2656.304 kb on + strand, within ypfGat 2656.305 kb on - strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.307 kb on + strand, within ypfGat 2656.308 kb on - strand, within ypfGat 2656.412 kb on + strand, within ypfGat 2656.412 kb on + strand, within ypfGat 2656.413 kb on - strand, within ypfGat 2656.619 kb on + strand, within ypfGat 2656.677 kb on + strand, within ypfGat 2656.695 kb on + strand, within ypfGat 2656.695 kb on + strand, within ypfGat 2656.714 kb on + strand, within ypfGat 2656.714 kb on + strand, within ypfGat 2656.750 kb on - strand, within ypfGat 2657.041 kb on + strandat 2657.041 kb on + strandat 2657.042 kb on - strandat 2657.042 kb on - strandat 2657.042 kb on - strandat 2657.143 kb on - strandat 2657.240 kb on + strandat 2657.240 kb on + strandat 2657.240 kb on + strandat 2657.240 kb on + strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.241 kb on - strandat 2657.247 kb on - strandat 2657.247 kb on - strandat 2657.263 kb on - strandat 2657.296 kb on - strandat 2657.296 kb on - strandat 2657.448 kb on + strand, within tktat 2657.448 kb on + strand, within tktat 2657.448 kb on + strand, within tktat 2657.451 kb on + strand, within tktat 2657.452 kb on - strand, within tktat 2657.484 kb on - strand, within tktat 2657.484 kb on - strand, within tktat 2657.730 kb on - strand, within tktat 2657.736 kb on + strand, within tktat 2657.737 kb on - strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.894 kb on + strand, within tktat 2657.895 kb on - strand, within tktat 2657.895 kb on - strand, within tktat 2657.895 kb on - strand, within tktat 2657.895 kb on - strand, within tktat 2657.895 kb on - strand, within tkt

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,655,211 + -0.2
2,655,243 + +0.7
2,655,244 - -0.3
2,655,244 - +1.1
2,655,244 - +0.0
2,655,244 - +0.7
2,655,246 + -0.2
2,655,246 + +0.1
2,655,248 + -1.5
2,655,249 - -0.3
2,655,249 - -0.1
2,655,249 - -0.7
2,655,249 - -0.1
2,655,326 + +0.8
2,655,327 - +0.7
2,655,346 + nudK NOLOHH_13665 0.12 -0.8
2,655,346 + nudK NOLOHH_13665 0.12 +1.1
2,655,346 + nudK NOLOHH_13665 0.12 -0.3
2,655,347 - nudK NOLOHH_13665 0.12 -0.4
2,655,347 - nudK NOLOHH_13665 0.12 -0.3
2,655,347 - nudK NOLOHH_13665 0.12 -0.7
2,655,380 - nudK NOLOHH_13665 0.18 +0.3
2,655,401 + nudK NOLOHH_13665 0.21 +0.8
2,655,435 - nudK NOLOHH_13665 0.27 -0.8
2,655,435 - nudK NOLOHH_13665 0.27 -0.3
2,655,565 + nudK NOLOHH_13665 0.50 -0.5
2,655,565 + nudK NOLOHH_13665 0.50 -0.2
2,655,632 + nudK NOLOHH_13665 0.61 +0.0
2,655,632 + nudK NOLOHH_13665 0.61 +1.3
2,655,632 + nudK NOLOHH_13665 0.61 -0.9
2,655,632 + nudK NOLOHH_13665 0.61 +0.4
2,655,632 + nudK NOLOHH_13665 0.61 -0.5
2,655,633 - nudK NOLOHH_13665 0.62 -1.0
2,655,633 - nudK NOLOHH_13665 0.62 +0.0
2,655,634 + nudK NOLOHH_13665 0.62 +1.9
2,655,634 + nudK NOLOHH_13665 0.62 +0.0
2,655,634 + nudK NOLOHH_13665 0.62 +2.7
2,655,683 + nudK NOLOHH_13665 0.70 +0.3
2,655,683 + nudK NOLOHH_13665 0.70 +0.3
2,655,733 + nudK NOLOHH_13665 0.79 +0.6
2,655,793 - nudK NOLOHH_13665 0.89 -1.0
2,656,083 + -0.3
2,656,083 + -0.4
2,656,083 + +0.3
2,656,084 - ypfG NOLOHH_13670 0.10 -0.2
2,656,084 - ypfG NOLOHH_13670 0.10 +0.3
2,656,087 - ypfG NOLOHH_13670 0.10 +0.3
2,656,181 + ypfG NOLOHH_13670 0.19 -0.3
2,656,182 - ypfG NOLOHH_13670 0.19 -0.5
2,656,185 + ypfG NOLOHH_13670 0.20 +0.3
2,656,185 + ypfG NOLOHH_13670 0.20 +0.5
2,656,186 - ypfG NOLOHH_13670 0.20 +0.3
2,656,250 + ypfG NOLOHH_13670 0.26 +0.3
2,656,250 + ypfG NOLOHH_13670 0.26 -0.3
2,656,251 - ypfG NOLOHH_13670 0.26 +2.3
2,656,304 + ypfG NOLOHH_13670 0.31 +1.2
2,656,305 - ypfG NOLOHH_13670 0.31 +1.3
2,656,307 + ypfG NOLOHH_13670 0.31 +1.3
2,656,307 + ypfG NOLOHH_13670 0.31 +0.3
2,656,307 + ypfG NOLOHH_13670 0.31 -0.3
2,656,307 + ypfG NOLOHH_13670 0.31 +0.0
2,656,307 + ypfG NOLOHH_13670 0.31 -0.8
2,656,307 + ypfG NOLOHH_13670 0.31 -0.1
2,656,308 - ypfG NOLOHH_13670 0.32 -1.3
2,656,412 + ypfG NOLOHH_13670 0.41 -1.3
2,656,412 + ypfG NOLOHH_13670 0.41 +0.4
2,656,413 - ypfG NOLOHH_13670 0.42 +0.7
2,656,619 + ypfG NOLOHH_13670 0.61 -2.5
2,656,677 + ypfG NOLOHH_13670 0.67 -0.3
2,656,695 + ypfG NOLOHH_13670 0.69 -1.4
2,656,695 + ypfG NOLOHH_13670 0.69 -0.0
2,656,714 + ypfG NOLOHH_13670 0.70 -0.7
2,656,714 + ypfG NOLOHH_13670 0.70 +0.9
2,656,750 - ypfG NOLOHH_13670 0.74 +1.3
2,657,041 + -0.0
2,657,041 + -1.3
2,657,042 - +1.3
2,657,042 - -1.3
2,657,042 - -0.3
2,657,143 - -0.4
2,657,240 + +0.3
2,657,240 + +0.0
2,657,240 + +0.3
2,657,240 + +1.3
2,657,241 - -0.2
2,657,241 - -0.9
2,657,241 - -0.3
2,657,241 - +1.2
2,657,241 - +1.6
2,657,241 - -0.3
2,657,241 - +0.1
2,657,241 - -0.3
2,657,241 - +0.0
2,657,241 - +0.3
2,657,247 - -0.1
2,657,247 - +1.3
2,657,263 - +1.2
2,657,296 - +1.0
2,657,296 - +0.7
2,657,448 + tkt NOLOHH_13675 0.17 +1.3
2,657,448 + tkt NOLOHH_13675 0.17 -1.3
2,657,448 + tkt NOLOHH_13675 0.17 -1.7
2,657,451 + tkt NOLOHH_13675 0.18 +0.3
2,657,452 - tkt NOLOHH_13675 0.18 +0.3
2,657,484 - tkt NOLOHH_13675 0.19 -1.3
2,657,484 - tkt NOLOHH_13675 0.19 +0.0
2,657,730 - tkt NOLOHH_13675 0.32 -0.0
2,657,736 + tkt NOLOHH_13675 0.32 -0.1
2,657,737 - tkt NOLOHH_13675 0.32 -0.7
2,657,894 + tkt NOLOHH_13675 0.40 -0.5
2,657,894 + tkt NOLOHH_13675 0.40 -1.5
2,657,894 + tkt NOLOHH_13675 0.40 -0.7
2,657,894 + tkt NOLOHH_13675 0.40 -0.7
2,657,894 + tkt NOLOHH_13675 0.40 -0.7
2,657,894 + tkt NOLOHH_13675 0.40 +0.8
2,657,894 + tkt NOLOHH_13675 0.40 +0.9
2,657,894 + tkt NOLOHH_13675 0.40 +0.3
2,657,895 - tkt NOLOHH_13675 0.40 -0.9
2,657,895 - tkt NOLOHH_13675 0.40 -1.3
2,657,895 - tkt NOLOHH_13675 0.40 +0.3
2,657,895 - tkt NOLOHH_13675 0.40 -0.3
2,657,895 - tkt NOLOHH_13675 0.40 +0.1

Or see this region's nucleotide sequence