Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13630

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttmcA and ypfH are separated by 73 nucleotidesypfH and ypfN are separated by 109 nucleotidesypfN and dapE are separated by 27 nucleotides NOLOHH_13610: tmcA - tRNA cytosine(34) acetyltransferase TmcA, at 2,642,897 to 2,644,912 tmcA NOLOHH_13615: ypfH - esterase, at 2,644,986 to 2,645,684 ypfH NOLOHH_13630: ypfN - UPF0370 protein YpfN, at 2,645,794 to 2,645,994 ypfN NOLOHH_13635: dapE - succinyl-diaminopimelate desuccinylase, at 2,646,022 to 2,647,149 dapE Position (kb) 2645 2646Strain fitness (log2 ratio) -2 -1 0 1 2at 2644.853 kb on - strandat 2644.855 kb on + strandat 2644.856 kb on - strandat 2644.954 kb on + strandat 2644.954 kb on + strandat 2645.089 kb on + strand, within ypfHat 2645.089 kb on + strand, within ypfHat 2645.090 kb on - strand, within ypfHat 2645.331 kb on - strand, within ypfHat 2645.348 kb on + strand, within ypfHat 2645.349 kb on - strand, within ypfHat 2645.604 kb on + strand, within ypfHat 2645.606 kb on + strand, within ypfHat 2645.607 kb on - strand, within ypfHat 2645.607 kb on - strand, within ypfHat 2645.682 kb on + strandat 2645.682 kb on + strandat 2645.694 kb on + strandat 2645.845 kb on - strand, within ypfNat 2645.976 kb on - strandat 2645.979 kb on + strandat 2645.999 kb on - strandat 2645.999 kb on - strandat 2645.999 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
2,644,853 - +2.3
2,644,855 + -0.7
2,644,856 - -0.7
2,644,954 + +0.3
2,644,954 + -0.7
2,645,089 + ypfH NOLOHH_13615 0.15 +0.8
2,645,089 + ypfH NOLOHH_13615 0.15 -0.0
2,645,090 - ypfH NOLOHH_13615 0.15 -0.7
2,645,331 - ypfH NOLOHH_13615 0.49 -1.3
2,645,348 + ypfH NOLOHH_13615 0.52 +1.1
2,645,349 - ypfH NOLOHH_13615 0.52 +0.3
2,645,604 + ypfH NOLOHH_13615 0.88 -0.1
2,645,606 + ypfH NOLOHH_13615 0.89 -1.8
2,645,607 - ypfH NOLOHH_13615 0.89 +0.3
2,645,607 - ypfH NOLOHH_13615 0.89 -0.4
2,645,682 + +1.3
2,645,682 + +1.1
2,645,694 + +0.7
2,645,845 - ypfN NOLOHH_13630 0.25 +0.2
2,645,976 - +0.3
2,645,979 + -0.7
2,645,999 - -0.7
2,645,999 - -0.7
2,645,999 - +1.6

Or see this region's nucleotide sequence