Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13345

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsseA and yfhM are separated by 206 nucleotidesyfhM and pbpC are separated by 0 nucleotides NOLOHH_13340: sseA - 3-mercaptopyruvate sulfurtransferase, at 2,584,616 to 2,585,461 sseA NOLOHH_13345: yfhM - alpha2-macroglobulin, at 2,585,668 to 2,590,629 yfhM NOLOHH_13350: pbpC - peptidoglycan glycosyltransferase PbpC, at 2,590,630 to 2,592,942 pbpC Position (kb) 2585 2586 2587 2588 2589 2590 2591Strain fitness (log2 ratio) -2 -1 0 1 2at 2584.715 kb on + strand, within sseAat 2584.715 kb on + strand, within sseAat 2584.760 kb on - strand, within sseAat 2584.877 kb on - strand, within sseAat 2584.877 kb on - strand, within sseAat 2584.877 kb on - strand, within sseAat 2584.877 kb on - strand, within sseAat 2584.982 kb on + strand, within sseAat 2584.983 kb on - strand, within sseAat 2584.983 kb on - strand, within sseAat 2584.983 kb on - strand, within sseAat 2584.983 kb on - strand, within sseAat 2584.983 kb on - strand, within sseAat 2585.049 kb on - strand, within sseAat 2585.063 kb on + strand, within sseAat 2585.064 kb on - strand, within sseAat 2585.064 kb on - strand, within sseAat 2585.200 kb on + strand, within sseAat 2585.201 kb on - strand, within sseAat 2585.323 kb on + strand, within sseAat 2585.324 kb on - strand, within sseAat 2585.416 kb on + strandat 2585.442 kb on - strandat 2585.461 kb on + strandat 2585.461 kb on + strandat 2585.461 kb on + strandat 2585.461 kb on + strandat 2585.462 kb on - strandat 2585.462 kb on - strandat 2585.462 kb on - strandat 2585.462 kb on - strandat 2585.462 kb on - strandat 2585.508 kb on - strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.578 kb on + strandat 2585.579 kb on - strandat 2585.579 kb on - strandat 2585.579 kb on - strandat 2585.597 kb on + strandat 2585.598 kb on - strandat 2585.598 kb on - strandat 2585.598 kb on - strandat 2585.598 kb on - strandat 2585.601 kb on + strandat 2585.602 kb on - strandat 2585.602 kb on - strandat 2585.606 kb on + strandat 2585.607 kb on - strandat 2585.623 kb on + strandat 2585.623 kb on + strandat 2585.624 kb on - strandat 2585.624 kb on - strandat 2585.624 kb on - strandat 2585.699 kb on + strandat 2585.700 kb on - strandat 2586.247 kb on - strand, within yfhMat 2586.258 kb on + strand, within yfhMat 2586.373 kb on + strand, within yfhMat 2586.506 kb on - strand, within yfhMat 2586.506 kb on - strand, within yfhMat 2586.533 kb on + strand, within yfhMat 2586.533 kb on + strand, within yfhMat 2586.635 kb on + strand, within yfhMat 2586.639 kb on - strand, within yfhMat 2586.722 kb on + strand, within yfhMat 2586.722 kb on + strand, within yfhMat 2586.795 kb on + strand, within yfhMat 2586.875 kb on + strand, within yfhMat 2586.938 kb on + strand, within yfhMat 2586.938 kb on + strand, within yfhMat 2587.012 kb on - strand, within yfhMat 2587.044 kb on + strand, within yfhMat 2587.053 kb on + strand, within yfhMat 2587.114 kb on - strand, within yfhMat 2587.201 kb on + strand, within yfhMat 2587.201 kb on + strand, within yfhMat 2587.201 kb on + strand, within yfhMat 2587.201 kb on + strand, within yfhMat 2587.201 kb on + strand, within yfhMat 2587.202 kb on - strand, within yfhMat 2587.207 kb on + strand, within yfhMat 2587.222 kb on - strand, within yfhMat 2587.230 kb on + strand, within yfhMat 2587.230 kb on + strand, within yfhMat 2587.231 kb on - strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.307 kb on + strand, within yfhMat 2587.308 kb on - strand, within yfhMat 2587.308 kb on - strand, within yfhMat 2587.437 kb on + strand, within yfhMat 2587.546 kb on + strand, within yfhMat 2587.621 kb on + strand, within yfhMat 2587.623 kb on + strand, within yfhMat 2587.624 kb on - strand, within yfhMat 2587.693 kb on + strand, within yfhMat 2587.693 kb on + strand, within yfhMat 2587.890 kb on + strand, within yfhMat 2587.890 kb on + strand, within yfhMat 2587.890 kb on + strand, within yfhMat 2587.890 kb on + strand, within yfhMat 2587.980 kb on + strand, within yfhMat 2587.986 kb on + strand, within yfhMat 2587.987 kb on - strand, within yfhMat 2587.987 kb on - strand, within yfhMat 2587.987 kb on - strand, within yfhMat 2588.137 kb on + strand, within yfhMat 2588.138 kb on - strand, within yfhMat 2588.138 kb on - strand, within yfhMat 2588.141 kb on + strand, within yfhMat 2588.146 kb on - strand, within yfhMat 2588.153 kb on + strand, within yfhMat 2588.156 kb on + strand, within yfhMat 2588.156 kb on + strand, within yfhMat 2588.157 kb on - strand, within yfhMat 2588.157 kb on - strand, within yfhMat 2588.281 kb on - strand, within yfhMat 2588.281 kb on - strand, within yfhMat 2588.368 kb on - strand, within yfhMat 2588.382 kb on + strand, within yfhMat 2588.392 kb on + strand, within yfhMat 2588.393 kb on - strand, within yfhMat 2588.453 kb on - strand, within yfhMat 2588.622 kb on + strand, within yfhMat 2588.643 kb on + strand, within yfhMat 2588.714 kb on + strand, within yfhMat 2588.714 kb on + strand, within yfhMat 2588.891 kb on + strand, within yfhMat 2588.907 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.910 kb on + strand, within yfhMat 2588.911 kb on - strand, within yfhMat 2588.911 kb on - strand, within yfhMat 2588.919 kb on + strand, within yfhMat 2589.015 kb on + strand, within yfhMat 2589.015 kb on + strand, within yfhMat 2589.016 kb on - strand, within yfhMat 2589.063 kb on + strand, within yfhMat 2589.067 kb on + strand, within yfhMat 2589.067 kb on + strand, within yfhMat 2589.267 kb on + strand, within yfhMat 2589.433 kb on + strand, within yfhMat 2589.434 kb on - strand, within yfhMat 2589.528 kb on - strand, within yfhMat 2589.599 kb on - strand, within yfhMat 2589.839 kb on + strand, within yfhMat 2589.865 kb on - strand, within yfhMat 2589.865 kb on - strand, within yfhMat 2589.870 kb on - strand, within yfhMat 2589.872 kb on + strand, within yfhMat 2589.886 kb on + strand, within yfhMat 2589.887 kb on - strand, within yfhMat 2589.951 kb on + strand, within yfhMat 2590.052 kb on + strand, within yfhMat 2590.216 kb on - strandat 2590.274 kb on + strandat 2590.274 kb on + strandat 2590.275 kb on - strandat 2590.431 kb on + strandat 2590.431 kb on + strandat 2590.431 kb on + strandat 2590.487 kb on - strandat 2590.537 kb on + strandat 2590.537 kb on + strandat 2590.537 kb on + strandat 2590.538 kb on - strandat 2590.538 kb on - strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.570 kb on + strandat 2590.571 kb on - strandat 2590.571 kb on - strandat 2590.571 kb on - strandat 2590.571 kb on - strandat 2590.571 kb on - strandat 2590.627 kb on + strandat 2590.717 kb on - strandat 2590.856 kb on - strandat 2590.856 kb on - strandat 2590.856 kb on - strandat 2590.876 kb on + strand, within pbpCat 2590.876 kb on + strand, within pbpCat 2590.965 kb on + strand, within pbpCat 2590.990 kb on - strand, within pbpCat 2591.108 kb on - strand, within pbpCat 2591.108 kb on - strand, within pbpCat 2591.167 kb on + strand, within pbpCat 2591.167 kb on + strand, within pbpCat 2591.168 kb on - strand, within pbpCat 2591.168 kb on - strand, within pbpCat 2591.193 kb on - strand, within pbpCat 2591.193 kb on - strand, within pbpCat 2591.193 kb on - strand, within pbpCat 2591.289 kb on + strand, within pbpCat 2591.289 kb on + strand, within pbpCat 2591.451 kb on + strand, within pbpCat 2591.451 kb on + strand, within pbpCat 2591.451 kb on + strand, within pbpCat 2591.452 kb on - strand, within pbpCat 2591.452 kb on - strand, within pbpCat 2591.625 kb on + strand, within pbpC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,584,715 + sseA NOLOHH_13340 0.12 +1.3
2,584,715 + sseA NOLOHH_13340 0.12 -1.3
2,584,760 - sseA NOLOHH_13340 0.17 +0.3
2,584,877 - sseA NOLOHH_13340 0.31 -0.5
2,584,877 - sseA NOLOHH_13340 0.31 -0.8
2,584,877 - sseA NOLOHH_13340 0.31 -0.1
2,584,877 - sseA NOLOHH_13340 0.31 -2.0
2,584,982 + sseA NOLOHH_13340 0.43 +1.3
2,584,983 - sseA NOLOHH_13340 0.43 +1.1
2,584,983 - sseA NOLOHH_13340 0.43 -0.4
2,584,983 - sseA NOLOHH_13340 0.43 -0.7
2,584,983 - sseA NOLOHH_13340 0.43 -0.3
2,584,983 - sseA NOLOHH_13340 0.43 -0.3
2,585,049 - sseA NOLOHH_13340 0.51 -0.2
2,585,063 + sseA NOLOHH_13340 0.53 +0.3
2,585,064 - sseA NOLOHH_13340 0.53 +0.7
2,585,064 - sseA NOLOHH_13340 0.53 -0.7
2,585,200 + sseA NOLOHH_13340 0.69 -1.7
2,585,201 - sseA NOLOHH_13340 0.69 +0.2
2,585,323 + sseA NOLOHH_13340 0.84 -0.1
2,585,324 - sseA NOLOHH_13340 0.84 -0.0
2,585,416 + -0.1
2,585,442 - -0.8
2,585,461 + +0.7
2,585,461 + -1.0
2,585,461 + -2.5
2,585,461 + +0.7
2,585,462 - +0.8
2,585,462 - +1.3
2,585,462 - -0.2
2,585,462 - -1.3
2,585,462 - +0.3
2,585,508 - +0.6
2,585,578 + +0.3
2,585,578 + +1.6
2,585,578 + -0.2
2,585,578 + -1.3
2,585,578 + -2.3
2,585,578 + -0.5
2,585,578 + +1.3
2,585,579 - +0.9
2,585,579 - -0.7
2,585,579 - -1.3
2,585,597 + -2.0
2,585,598 - -0.5
2,585,598 - -1.4
2,585,598 - +0.3
2,585,598 - -0.9
2,585,601 + -0.3
2,585,602 - -0.5
2,585,602 - -0.4
2,585,606 + +0.9
2,585,607 - -1.4
2,585,623 + -0.2
2,585,623 + -0.3
2,585,624 - -0.5
2,585,624 - -1.5
2,585,624 - +0.3
2,585,699 + -0.7
2,585,700 - -0.3
2,586,247 - yfhM NOLOHH_13345 0.12 +2.3
2,586,258 + yfhM NOLOHH_13345 0.12 -1.3
2,586,373 + yfhM NOLOHH_13345 0.14 +0.3
2,586,506 - yfhM NOLOHH_13345 0.17 -0.2
2,586,506 - yfhM NOLOHH_13345 0.17 -1.1
2,586,533 + yfhM NOLOHH_13345 0.17 -0.9
2,586,533 + yfhM NOLOHH_13345 0.17 -0.7
2,586,635 + yfhM NOLOHH_13345 0.19 +0.3
2,586,639 - yfhM NOLOHH_13345 0.20 +1.3
2,586,722 + yfhM NOLOHH_13345 0.21 -0.9
2,586,722 + yfhM NOLOHH_13345 0.21 +0.3
2,586,795 + yfhM NOLOHH_13345 0.23 -0.7
2,586,875 + yfhM NOLOHH_13345 0.24 -0.5
2,586,938 + yfhM NOLOHH_13345 0.26 -0.7
2,586,938 + yfhM NOLOHH_13345 0.26 +0.3
2,587,012 - yfhM NOLOHH_13345 0.27 -0.2
2,587,044 + yfhM NOLOHH_13345 0.28 -0.4
2,587,053 + yfhM NOLOHH_13345 0.28 +0.3
2,587,114 - yfhM NOLOHH_13345 0.29 +0.7
2,587,201 + yfhM NOLOHH_13345 0.31 -0.3
2,587,201 + yfhM NOLOHH_13345 0.31 -0.4
2,587,201 + yfhM NOLOHH_13345 0.31 +0.3
2,587,201 + yfhM NOLOHH_13345 0.31 -1.5
2,587,201 + yfhM NOLOHH_13345 0.31 +1.8
2,587,202 - yfhM NOLOHH_13345 0.31 -1.3
2,587,207 + yfhM NOLOHH_13345 0.31 -2.3
2,587,222 - yfhM NOLOHH_13345 0.31 -0.7
2,587,230 + yfhM NOLOHH_13345 0.31 +0.7
2,587,230 + yfhM NOLOHH_13345 0.31 +0.3
2,587,231 - yfhM NOLOHH_13345 0.31 -1.3
2,587,307 + yfhM NOLOHH_13345 0.33 +0.1
2,587,307 + yfhM NOLOHH_13345 0.33 -0.7
2,587,307 + yfhM NOLOHH_13345 0.33 +1.6
2,587,307 + yfhM NOLOHH_13345 0.33 +0.7
2,587,307 + yfhM NOLOHH_13345 0.33 -0.1
2,587,307 + yfhM NOLOHH_13345 0.33 +0.9
2,587,307 + yfhM NOLOHH_13345 0.33 -1.0
2,587,307 + yfhM NOLOHH_13345 0.33 +0.1
2,587,307 + yfhM NOLOHH_13345 0.33 -0.3
2,587,308 - yfhM NOLOHH_13345 0.33 +0.3
2,587,308 - yfhM NOLOHH_13345 0.33 +1.3
2,587,437 + yfhM NOLOHH_13345 0.36 +0.0
2,587,546 + yfhM NOLOHH_13345 0.38 -1.3
2,587,621 + yfhM NOLOHH_13345 0.39 +0.3
2,587,623 + yfhM NOLOHH_13345 0.39 +0.2
2,587,624 - yfhM NOLOHH_13345 0.39 -0.3
2,587,693 + yfhM NOLOHH_13345 0.41 -0.1
2,587,693 + yfhM NOLOHH_13345 0.41 -0.1
2,587,890 + yfhM NOLOHH_13345 0.45 -0.3
2,587,890 + yfhM NOLOHH_13345 0.45 +2.5
2,587,890 + yfhM NOLOHH_13345 0.45 -0.1
2,587,890 + yfhM NOLOHH_13345 0.45 -0.4
2,587,980 + yfhM NOLOHH_13345 0.47 -0.4
2,587,986 + yfhM NOLOHH_13345 0.47 -0.0
2,587,987 - yfhM NOLOHH_13345 0.47 -0.9
2,587,987 - yfhM NOLOHH_13345 0.47 -0.7
2,587,987 - yfhM NOLOHH_13345 0.47 +0.3
2,588,137 + yfhM NOLOHH_13345 0.50 +0.7
2,588,138 - yfhM NOLOHH_13345 0.50 +0.1
2,588,138 - yfhM NOLOHH_13345 0.50 -1.1
2,588,141 + yfhM NOLOHH_13345 0.50 -0.7
2,588,146 - yfhM NOLOHH_13345 0.50 +0.2
2,588,153 + yfhM NOLOHH_13345 0.50 -0.0
2,588,156 + yfhM NOLOHH_13345 0.50 -2.0
2,588,156 + yfhM NOLOHH_13345 0.50 -0.9
2,588,157 - yfhM NOLOHH_13345 0.50 +0.2
2,588,157 - yfhM NOLOHH_13345 0.50 +0.7
2,588,281 - yfhM NOLOHH_13345 0.53 +0.7
2,588,281 - yfhM NOLOHH_13345 0.53 +0.3
2,588,368 - yfhM NOLOHH_13345 0.54 +1.5
2,588,382 + yfhM NOLOHH_13345 0.55 +0.1
2,588,392 + yfhM NOLOHH_13345 0.55 +0.1
2,588,393 - yfhM NOLOHH_13345 0.55 -2.1
2,588,453 - yfhM NOLOHH_13345 0.56 +0.3
2,588,622 + yfhM NOLOHH_13345 0.60 +0.6
2,588,643 + yfhM NOLOHH_13345 0.60 +0.0
2,588,714 + yfhM NOLOHH_13345 0.61 -0.5
2,588,714 + yfhM NOLOHH_13345 0.61 +0.9
2,588,891 + yfhM NOLOHH_13345 0.65 -0.7
2,588,907 + yfhM NOLOHH_13345 0.65 +0.3
2,588,910 + yfhM NOLOHH_13345 0.65 -1.5
2,588,910 + yfhM NOLOHH_13345 0.65 +0.9
2,588,910 + yfhM NOLOHH_13345 0.65 +0.6
2,588,910 + yfhM NOLOHH_13345 0.65 +1.3
2,588,910 + yfhM NOLOHH_13345 0.65 -0.3
2,588,910 + yfhM NOLOHH_13345 0.65 -1.5
2,588,911 - yfhM NOLOHH_13345 0.65 +0.1
2,588,911 - yfhM NOLOHH_13345 0.65 +1.3
2,588,919 + yfhM NOLOHH_13345 0.66 -1.8
2,589,015 + yfhM NOLOHH_13345 0.67 -0.5
2,589,015 + yfhM NOLOHH_13345 0.67 -0.7
2,589,016 - yfhM NOLOHH_13345 0.67 -1.1
2,589,063 + yfhM NOLOHH_13345 0.68 +0.3
2,589,067 + yfhM NOLOHH_13345 0.69 +2.3
2,589,067 + yfhM NOLOHH_13345 0.69 +0.3
2,589,267 + yfhM NOLOHH_13345 0.73 +0.0
2,589,433 + yfhM NOLOHH_13345 0.76 -1.4
2,589,434 - yfhM NOLOHH_13345 0.76 -1.0
2,589,528 - yfhM NOLOHH_13345 0.78 -0.2
2,589,599 - yfhM NOLOHH_13345 0.79 +0.6
2,589,839 + yfhM NOLOHH_13345 0.84 -0.4
2,589,865 - yfhM NOLOHH_13345 0.85 -0.7
2,589,865 - yfhM NOLOHH_13345 0.85 -0.3
2,589,870 - yfhM NOLOHH_13345 0.85 +1.3
2,589,872 + yfhM NOLOHH_13345 0.85 +0.3
2,589,886 + yfhM NOLOHH_13345 0.85 -0.3
2,589,887 - yfhM NOLOHH_13345 0.85 -0.1
2,589,951 + yfhM NOLOHH_13345 0.86 -0.0
2,590,052 + yfhM NOLOHH_13345 0.88 +0.9
2,590,216 - +0.3
2,590,274 + +0.3
2,590,274 + +0.3
2,590,275 - +0.3
2,590,431 + -0.1
2,590,431 + +1.9
2,590,431 + -0.1
2,590,487 - +1.3
2,590,537 + -1.4
2,590,537 + +0.3
2,590,537 + +2.1
2,590,538 - +0.3
2,590,538 - -0.1
2,590,570 + -0.7
2,590,570 + -0.2
2,590,570 + -0.2
2,590,570 + +1.3
2,590,570 + -0.4
2,590,570 + +0.8
2,590,570 + +1.3
2,590,570 + +1.3
2,590,571 - +0.3
2,590,571 - -0.3
2,590,571 - +0.3
2,590,571 - -0.7
2,590,571 - -1.4
2,590,627 + -0.3
2,590,717 - +0.5
2,590,856 - -1.7
2,590,856 - -1.3
2,590,856 - +0.3
2,590,876 + pbpC NOLOHH_13350 0.11 -0.3
2,590,876 + pbpC NOLOHH_13350 0.11 -1.3
2,590,965 + pbpC NOLOHH_13350 0.14 +0.3
2,590,990 - pbpC NOLOHH_13350 0.16 -1.3
2,591,108 - pbpC NOLOHH_13350 0.21 +0.3
2,591,108 - pbpC NOLOHH_13350 0.21 +0.1
2,591,167 + pbpC NOLOHH_13350 0.23 +0.7
2,591,167 + pbpC NOLOHH_13350 0.23 +0.6
2,591,168 - pbpC NOLOHH_13350 0.23 +0.3
2,591,168 - pbpC NOLOHH_13350 0.23 +0.3
2,591,193 - pbpC NOLOHH_13350 0.24 -1.3
2,591,193 - pbpC NOLOHH_13350 0.24 -0.7
2,591,193 - pbpC NOLOHH_13350 0.24 +0.3
2,591,289 + pbpC NOLOHH_13350 0.28 +0.7
2,591,289 + pbpC NOLOHH_13350 0.28 -1.7
2,591,451 + pbpC NOLOHH_13350 0.35 +2.5
2,591,451 + pbpC NOLOHH_13350 0.35 +0.6
2,591,451 + pbpC NOLOHH_13350 0.35 +1.3
2,591,452 - pbpC NOLOHH_13350 0.36 +0.3
2,591,452 - pbpC NOLOHH_13350 0.36 +2.3
2,591,625 + pbpC NOLOHH_13350 0.43 +0.3

Or see this region's nucleotide sequence