Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ffh and rpsP are separated by 136 nucleotides rpsP and rimM are separated by 18 nucleotides rimM and trmD are separated by 30 nucleotides trmD and rplS are separated by 41 nucleotides rplS and yfiB are separated by 76 nucleotides yfiB and dgcN are separated by 15 nucleotides
NOLOHH_12845: ffh - signal recognition particle protein, at 2,490,892 to 2,492,253
ffh
NOLOHH_12850: rpsP - 30S ribosomal protein S16, at 2,492,390 to 2,492,638
rpsP
NOLOHH_12855: rimM - ribosome maturation factor RimM, at 2,492,657 to 2,493,205
rimM
NOLOHH_12860: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 2,493,236 to 2,494,003
trmD
NOLOHH_12865: rplS - 50S ribosomal protein L19, at 2,494,045 to 2,494,392
rplS
NOLOHH_12870: yfiB - OmpA family protein, at 2,494,469 to 2,494,951
yfiB
NOLOHH_12875: dgcN - diguanylate cyclase DgcN, at 2,494,967 to 2,496,193
dgcN
Position (kb)
2493
2494
2495 Strain fitness (log2 ratio)
-2
-1
0
1 at 2492.251 kb on + strand at 2492.252 kb on - strand at 2492.261 kb on + strand at 2492.261 kb on + strand at 2492.262 kb on - strand at 2492.262 kb on - strand at 2492.277 kb on + strand at 2494.481 kb on - strand at 2494.481 kb on - strand at 2494.481 kb on - strand at 2494.654 kb on - strand, within yfiB at 2494.654 kb on - strand, within yfiB at 2494.668 kb on + strand, within yfiB at 2494.668 kb on + strand, within yfiB at 2494.669 kb on - strand, within yfiB at 2494.669 kb on - strand, within yfiB at 2494.669 kb on - strand, within yfiB at 2494.669 kb on - strand, within yfiB at 2494.803 kb on - strand, within yfiB at 2494.908 kb on - strand at 2494.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,492,251 + +1.3 2,492,252 - -0.9 2,492,261 + +0.6 2,492,261 + +0.0 2,492,262 - -0.7 2,492,262 - +0.1 2,492,277 + +0.7 2,494,481 - -0.7 2,494,481 - -0.7 2,494,481 - -0.7 2,494,654 - yfiB NOLOHH_12870 0.38 +1.3 2,494,654 - yfiB NOLOHH_12870 0.38 +0.0 2,494,668 + yfiB NOLOHH_12870 0.41 +0.0 2,494,668 + yfiB NOLOHH_12870 0.41 -1.7 2,494,669 - yfiB NOLOHH_12870 0.41 -1.3 2,494,669 - yfiB NOLOHH_12870 0.41 -0.3 2,494,669 - yfiB NOLOHH_12870 0.41 -2.0 2,494,669 - yfiB NOLOHH_12870 0.41 -0.3 2,494,803 - yfiB NOLOHH_12870 0.69 -0.7 2,494,908 - -0.8 2,494,960 - -0.8
Or see this region's nucleotide sequence