Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12855

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntffh and rpsP are separated by 136 nucleotidesrpsP and rimM are separated by 18 nucleotidesrimM and trmD are separated by 30 nucleotidestrmD and rplS are separated by 41 nucleotides NOLOHH_12845: ffh - signal recognition particle protein, at 2,490,892 to 2,492,253 ffh NOLOHH_12850: rpsP - 30S ribosomal protein S16, at 2,492,390 to 2,492,638 rpsP NOLOHH_12855: rimM - ribosome maturation factor RimM, at 2,492,657 to 2,493,205 rimM NOLOHH_12860: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 2,493,236 to 2,494,003 trmD NOLOHH_12865: rplS - 50S ribosomal protein L19, at 2,494,045 to 2,494,392 rplS Position (kb) 2492 2493 2494Strain fitness (log2 ratio) -1 0 1at 2492.251 kb on + strandat 2492.252 kb on - strandat 2492.261 kb on + strandat 2492.261 kb on + strandat 2492.262 kb on - strandat 2492.262 kb on - strandat 2492.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,492,251 + +1.3
2,492,252 - -0.9
2,492,261 + +0.6
2,492,261 + +0.0
2,492,262 - -0.7
2,492,262 - +0.1
2,492,277 + +0.7

Or see this region's nucleotide sequence