Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_12775 and NOLOHH_12780 are separated by 73 nucleotides NOLOHH_12780 and NOLOHH_12785 are separated by 38 nucleotides
NOLOHH_12775: NOLOHH_12775 - Response-reg-2 domain-containing protein, at 2,478,355 to 2,480,103
_12775
NOLOHH_12780: NOLOHH_12780 - hypothetical protein, at 2,480,177 to 2,480,593
_12780
NOLOHH_12785: NOLOHH_12785 - integrase, at 2,480,632 to 2,481,861
_12785
Position (kb)
2480
2481 Strain fitness (log2 ratio)
-2
-1
0
1 at 2479.572 kb on + strand, within NOLOHH_12775 at 2479.659 kb on - strand, within NOLOHH_12775 at 2479.807 kb on - strand, within NOLOHH_12775 at 2479.885 kb on - strand, within NOLOHH_12775 at 2480.058 kb on + strand at 2480.615 kb on - strand at 2480.633 kb on + strand at 2480.669 kb on + strand at 2480.823 kb on + strand, within NOLOHH_12785 at 2480.823 kb on + strand, within NOLOHH_12785 at 2480.843 kb on - strand, within NOLOHH_12785 at 2480.874 kb on + strand, within NOLOHH_12785 at 2480.875 kb on - strand, within NOLOHH_12785 at 2480.902 kb on - strand, within NOLOHH_12785 at 2480.908 kb on - strand, within NOLOHH_12785 at 2480.966 kb on - strand, within NOLOHH_12785 at 2481.064 kb on - strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.217 kb on - strand, within NOLOHH_12785 at 2481.217 kb on - strand, within NOLOHH_12785 at 2481.235 kb on - strand, within NOLOHH_12785 at 2481.288 kb on + strand, within NOLOHH_12785 at 2481.288 kb on + strand, within NOLOHH_12785 at 2481.335 kb on - strand, within NOLOHH_12785 at 2481.363 kb on + strand, within NOLOHH_12785 at 2481.483 kb on + strand, within NOLOHH_12785 at 2481.497 kb on - strand, within NOLOHH_12785 at 2481.546 kb on + strand, within NOLOHH_12785
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,479,572 + NOLOHH_12775 0.70 -1.5 2,479,659 - NOLOHH_12775 0.75 +0.2 2,479,807 - NOLOHH_12775 0.83 +0.3 2,479,885 - NOLOHH_12775 0.87 +0.3 2,480,058 + -1.7 2,480,615 - +0.2 2,480,633 + +0.6 2,480,669 + +0.7 2,480,823 + NOLOHH_12785 0.16 +0.0 2,480,823 + NOLOHH_12785 0.16 +1.2 2,480,843 - NOLOHH_12785 0.17 -0.3 2,480,874 + NOLOHH_12785 0.20 -1.3 2,480,875 - NOLOHH_12785 0.20 +0.3 2,480,902 - NOLOHH_12785 0.22 +1.1 2,480,908 - NOLOHH_12785 0.22 -0.4 2,480,966 - NOLOHH_12785 0.27 +0.3 2,481,064 - NOLOHH_12785 0.35 +0.3 2,481,138 + NOLOHH_12785 0.41 -0.3 2,481,138 + NOLOHH_12785 0.41 -0.6 2,481,138 + NOLOHH_12785 0.41 +1.3 2,481,138 + NOLOHH_12785 0.41 +1.3 2,481,139 - NOLOHH_12785 0.41 -1.5 2,481,139 - NOLOHH_12785 0.41 -0.2 2,481,139 - NOLOHH_12785 0.41 +0.5 2,481,217 - NOLOHH_12785 0.48 -1.3 2,481,217 - NOLOHH_12785 0.48 +1.1 2,481,235 - NOLOHH_12785 0.49 +0.1 2,481,288 + NOLOHH_12785 0.53 -1.8 2,481,288 + NOLOHH_12785 0.53 -0.2 2,481,335 - NOLOHH_12785 0.57 +0.3 2,481,363 + NOLOHH_12785 0.59 -1.7 2,481,483 + NOLOHH_12785 0.69 -2.0 2,481,497 - NOLOHH_12785 0.70 +0.3 2,481,546 + NOLOHH_12785 0.74 +0.2
Or see this region's nucleotide sequence