Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12775

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_12770 and NOLOHH_12775 are separated by 1 nucleotidesNOLOHH_12775 and NOLOHH_12780 are separated by 73 nucleotidesNOLOHH_12780 and NOLOHH_12785 are separated by 38 nucleotides NOLOHH_12770: NOLOHH_12770 - ATP-binding protein, at 2,476,635 to 2,478,353 _12770 NOLOHH_12775: NOLOHH_12775 - Response-reg-2 domain-containing protein, at 2,478,355 to 2,480,103 _12775 NOLOHH_12780: NOLOHH_12780 - hypothetical protein, at 2,480,177 to 2,480,593 _12780 NOLOHH_12785: NOLOHH_12785 - integrase, at 2,480,632 to 2,481,861 _12785 Position (kb) 2478 2479 2480 2481Strain fitness (log2 ratio) -1 0 1 2at 2477.615 kb on + strand, within NOLOHH_12770at 2478.175 kb on + strand, within NOLOHH_12770at 2478.758 kb on + strand, within NOLOHH_12775at 2479.572 kb on + strand, within NOLOHH_12775at 2479.659 kb on - strand, within NOLOHH_12775at 2479.807 kb on - strand, within NOLOHH_12775at 2479.885 kb on - strand, within NOLOHH_12775at 2480.058 kb on + strandat 2480.615 kb on - strandat 2480.633 kb on + strandat 2480.669 kb on + strandat 2480.823 kb on + strand, within NOLOHH_12785at 2480.823 kb on + strand, within NOLOHH_12785at 2480.843 kb on - strand, within NOLOHH_12785at 2480.874 kb on + strand, within NOLOHH_12785at 2480.875 kb on - strand, within NOLOHH_12785at 2480.902 kb on - strand, within NOLOHH_12785at 2480.908 kb on - strand, within NOLOHH_12785at 2480.966 kb on - strand, within NOLOHH_12785at 2481.064 kb on - strand, within NOLOHH_12785

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,477,615 + NOLOHH_12770 0.57 +0.3
2,478,175 + NOLOHH_12770 0.90 -0.3
2,478,758 + NOLOHH_12775 0.23 +2.7
2,479,572 + NOLOHH_12775 0.70 -1.5
2,479,659 - NOLOHH_12775 0.75 +0.2
2,479,807 - NOLOHH_12775 0.83 +0.3
2,479,885 - NOLOHH_12775 0.87 +0.3
2,480,058 + -1.7
2,480,615 - +0.2
2,480,633 + +0.6
2,480,669 + +0.7
2,480,823 + NOLOHH_12785 0.16 +0.0
2,480,823 + NOLOHH_12785 0.16 +1.2
2,480,843 - NOLOHH_12785 0.17 -0.3
2,480,874 + NOLOHH_12785 0.20 -1.3
2,480,875 - NOLOHH_12785 0.20 +0.3
2,480,902 - NOLOHH_12785 0.22 +1.1
2,480,908 - NOLOHH_12785 0.22 -0.4
2,480,966 - NOLOHH_12785 0.27 +0.3
2,481,064 - NOLOHH_12785 0.35 +0.3

Or see this region's nucleotide sequence