Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metK and speA are separated by 794 nucleotides speA and NOLOHH_11180 are separated by 145 nucleotides
NOLOHH_11170: metK - methionine adenosyltransferase, at 2,160,850 to 2,162,004
metK
NOLOHH_11175: speA - biosynthetic arginine decarboxylase, at 2,162,799 to 2,164,775
speA
NOLOHH_11180: NOLOHH_11180 - Lipoprotein, at 2,164,921 to 2,165,652
_11180
Position (kb)
2162
2163
2164
2165 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2162.075 kb on - strand at 2162.254 kb on + strand at 2162.290 kb on + strand at 2162.310 kb on - strand at 2162.313 kb on + strand at 2162.392 kb on - strand at 2162.420 kb on + strand at 2162.421 kb on - strand at 2162.502 kb on + strand at 2162.503 kb on - strand at 2162.503 kb on - strand at 2162.517 kb on + strand at 2162.518 kb on - strand at 2162.555 kb on - strand at 2162.588 kb on + strand at 2162.589 kb on - strand at 2162.631 kb on + strand at 2162.631 kb on + strand at 2162.632 kb on - strand at 2162.722 kb on + strand at 2162.722 kb on + strand at 2162.769 kb on + strand at 2162.770 kb on - strand at 2162.776 kb on - strand at 2162.783 kb on + strand at 2162.798 kb on + strand at 2162.798 kb on + strand at 2162.799 kb on - strand at 2162.816 kb on + strand at 2162.852 kb on - strand at 2162.854 kb on + strand at 2162.854 kb on + strand at 2162.855 kb on - strand at 2162.855 kb on - strand at 2162.855 kb on - strand at 2162.855 kb on - strand at 2162.855 kb on - strand at 2162.909 kb on + strand at 2162.909 kb on + strand at 2162.909 kb on + strand at 2162.909 kb on + strand at 2162.913 kb on + strand at 2162.914 kb on - strand at 2162.914 kb on - strand at 2162.918 kb on + strand at 2162.937 kb on - strand at 2162.940 kb on + strand at 2162.940 kb on + strand at 2162.940 kb on + strand at 2162.940 kb on + strand at 2162.940 kb on + strand at 2162.940 kb on + strand at 2162.941 kb on - strand at 2162.941 kb on - strand at 2162.941 kb on - strand at 2162.943 kb on + strand at 2162.943 kb on + strand at 2162.943 kb on + strand at 2162.943 kb on + strand at 2162.943 kb on + strand at 2162.943 kb on + strand at 2162.944 kb on - strand at 2162.944 kb on - strand at 2163.139 kb on - strand, within speA at 2163.144 kb on + strand, within speA at 2163.156 kb on + strand, within speA at 2163.157 kb on - strand, within speA at 2163.157 kb on - strand, within speA at 2163.320 kb on + strand, within speA at 2163.333 kb on + strand, within speA at 2163.333 kb on + strand, within speA at 2163.334 kb on - strand, within speA at 2163.336 kb on - strand, within speA at 2163.349 kb on + strand, within speA at 2163.350 kb on - strand, within speA at 2163.350 kb on - strand, within speA at 2163.378 kb on + strand, within speA at 2163.547 kb on + strand, within speA at 2163.601 kb on + strand, within speA at 2163.678 kb on + strand, within speA at 2163.679 kb on - strand, within speA at 2163.747 kb on + strand, within speA at 2163.747 kb on + strand, within speA at 2163.786 kb on + strand, within speA at 2163.786 kb on + strand, within speA at 2163.786 kb on + strand, within speA at 2163.786 kb on + strand, within speA at 2163.942 kb on - strand, within speA at 2163.948 kb on + strand, within speA at 2163.948 kb on + strand, within speA at 2163.949 kb on - strand, within speA at 2163.950 kb on + strand, within speA at 2163.951 kb on - strand, within speA at 2164.119 kb on - strand, within speA at 2164.153 kb on - strand, within speA at 2164.238 kb on + strand, within speA at 2164.239 kb on - strand, within speA at 2164.239 kb on - strand, within speA at 2164.254 kb on + strand, within speA at 2164.255 kb on - strand, within speA at 2164.407 kb on + strand, within speA at 2164.408 kb on - strand, within speA at 2164.409 kb on + strand, within speA at 2164.410 kb on - strand, within speA at 2164.410 kb on - strand, within speA at 2164.453 kb on - strand, within speA at 2164.520 kb on + strand, within speA at 2164.521 kb on - strand, within speA at 2164.582 kb on + strand at 2164.583 kb on - strand at 2164.588 kb on + strand at 2164.588 kb on + strand at 2164.632 kb on + strand at 2164.632 kb on + strand at 2164.633 kb on - strand at 2164.636 kb on + strand at 2164.636 kb on + strand at 2164.636 kb on + strand at 2164.636 kb on + strand at 2164.637 kb on - strand at 2164.755 kb on - strand at 2164.758 kb on + strand at 2164.804 kb on + strand at 2164.937 kb on + strand at 2164.996 kb on + strand, within NOLOHH_11180 at 2164.997 kb on - strand, within NOLOHH_11180 at 2164.999 kb on - strand, within NOLOHH_11180 at 2164.999 kb on - strand, within NOLOHH_11180 at 2164.999 kb on - strand, within NOLOHH_11180 at 2165.125 kb on - strand, within NOLOHH_11180 at 2165.153 kb on - strand, within NOLOHH_11180 at 2165.163 kb on + strand, within NOLOHH_11180 at 2165.210 kb on + strand, within NOLOHH_11180 at 2165.255 kb on - strand, within NOLOHH_11180 at 2165.255 kb on - strand, within NOLOHH_11180 at 2165.255 kb on - strand, within NOLOHH_11180 at 2165.291 kb on + strand, within NOLOHH_11180 at 2165.293 kb on + strand, within NOLOHH_11180 at 2165.302 kb on - strand, within NOLOHH_11180 at 2165.386 kb on - strand, within NOLOHH_11180 at 2165.397 kb on + strand, within NOLOHH_11180 at 2165.397 kb on + strand, within NOLOHH_11180 at 2165.397 kb on + strand, within NOLOHH_11180 at 2165.398 kb on - strand, within NOLOHH_11180 at 2165.445 kb on + strand, within NOLOHH_11180 at 2165.451 kb on + strand, within NOLOHH_11180 at 2165.452 kb on - strand, within NOLOHH_11180 at 2165.452 kb on - strand, within NOLOHH_11180 at 2165.559 kb on - strand, within NOLOHH_11180 at 2165.559 kb on - strand, within NOLOHH_11180 at 2165.616 kb on + strand at 2165.616 kb on + strand at 2165.650 kb on + strand at 2165.679 kb on + strand at 2165.680 kb on - strand at 2165.680 kb on - strand at 2165.688 kb on - strand at 2165.691 kb on + strand at 2165.691 kb on + strand at 2165.692 kb on - strand at 2165.759 kb on + strand at 2165.760 kb on - strand at 2165.772 kb on + strand at 2165.772 kb on + strand at 2165.772 kb on + strand at 2165.773 kb on - strand at 2165.775 kb on + strand at 2165.775 kb on + strand at 2165.775 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,162,075 - -0.2 2,162,254 + -0.3 2,162,290 + -1.2 2,162,310 - -0.8 2,162,313 + +1.2 2,162,392 - +0.2 2,162,420 + -0.4 2,162,421 - -0.4 2,162,502 + -0.7 2,162,503 - -0.3 2,162,503 - +0.4 2,162,517 + -1.0 2,162,518 - -2.4 2,162,555 - -1.0 2,162,588 + +0.2 2,162,589 - -1.2 2,162,631 + -0.1 2,162,631 + +1.4 2,162,632 - -0.5 2,162,722 + -1.1 2,162,722 + -0.8 2,162,769 + +0.3 2,162,770 - -0.2 2,162,776 - -0.6 2,162,783 + -0.6 2,162,798 + -0.2 2,162,798 + -1.2 2,162,799 - -0.3 2,162,816 + -0.4 2,162,852 - +0.8 2,162,854 + -0.6 2,162,854 + -1.7 2,162,855 - -1.2 2,162,855 - +1.7 2,162,855 - -0.9 2,162,855 - +0.1 2,162,855 - +0.1 2,162,909 + +0.7 2,162,909 + -0.2 2,162,909 + +0.4 2,162,909 + -0.7 2,162,913 + -0.1 2,162,914 - -0.0 2,162,914 - -1.1 2,162,918 + +0.4 2,162,937 - +0.4 2,162,940 + +1.0 2,162,940 + -1.1 2,162,940 + +1.4 2,162,940 + +0.4 2,162,940 + +0.8 2,162,940 + +0.9 2,162,941 - -0.9 2,162,941 - +0.4 2,162,941 - -0.9 2,162,943 + +0.4 2,162,943 + +0.4 2,162,943 + -1.2 2,162,943 + -0.0 2,162,943 + +1.1 2,162,943 + -0.4 2,162,944 - +1.4 2,162,944 - +0.4 2,163,139 - speA NOLOHH_11175 0.17 -0.2 2,163,144 + speA NOLOHH_11175 0.17 +0.7 2,163,156 + speA NOLOHH_11175 0.18 -1.2 2,163,157 - speA NOLOHH_11175 0.18 +0.4 2,163,157 - speA NOLOHH_11175 0.18 +0.1 2,163,320 + speA NOLOHH_11175 0.26 -1.6 2,163,333 + speA NOLOHH_11175 0.27 -0.8 2,163,333 + speA NOLOHH_11175 0.27 -1.7 2,163,334 - speA NOLOHH_11175 0.27 -1.6 2,163,336 - speA NOLOHH_11175 0.27 +2.0 2,163,349 + speA NOLOHH_11175 0.28 -1.3 2,163,350 - speA NOLOHH_11175 0.28 -0.6 2,163,350 - speA NOLOHH_11175 0.28 -1.9 2,163,378 + speA NOLOHH_11175 0.29 -2.1 2,163,547 + speA NOLOHH_11175 0.38 +0.4 2,163,601 + speA NOLOHH_11175 0.41 -0.5 2,163,678 + speA NOLOHH_11175 0.44 +1.8 2,163,679 - speA NOLOHH_11175 0.45 +1.4 2,163,747 + speA NOLOHH_11175 0.48 -0.8 2,163,747 + speA NOLOHH_11175 0.48 -0.7 2,163,786 + speA NOLOHH_11175 0.50 -1.4 2,163,786 + speA NOLOHH_11175 0.50 -0.6 2,163,786 + speA NOLOHH_11175 0.50 +0.4 2,163,786 + speA NOLOHH_11175 0.50 +0.5 2,163,942 - speA NOLOHH_11175 0.58 +1.7 2,163,948 + speA NOLOHH_11175 0.58 -0.5 2,163,948 + speA NOLOHH_11175 0.58 -1.5 2,163,949 - speA NOLOHH_11175 0.58 -0.1 2,163,950 + speA NOLOHH_11175 0.58 +0.8 2,163,951 - speA NOLOHH_11175 0.58 +0.4 2,164,119 - speA NOLOHH_11175 0.67 -0.6 2,164,153 - speA NOLOHH_11175 0.68 +0.7 2,164,238 + speA NOLOHH_11175 0.73 +0.4 2,164,239 - speA NOLOHH_11175 0.73 -1.2 2,164,239 - speA NOLOHH_11175 0.73 -1.3 2,164,254 + speA NOLOHH_11175 0.74 +0.4 2,164,255 - speA NOLOHH_11175 0.74 +0.1 2,164,407 + speA NOLOHH_11175 0.81 -0.2 2,164,408 - speA NOLOHH_11175 0.81 -1.2 2,164,409 + speA NOLOHH_11175 0.81 -0.9 2,164,410 - speA NOLOHH_11175 0.81 -0.5 2,164,410 - speA NOLOHH_11175 0.81 -1.2 2,164,453 - speA NOLOHH_11175 0.84 +1.7 2,164,520 + speA NOLOHH_11175 0.87 -1.2 2,164,521 - speA NOLOHH_11175 0.87 -0.0 2,164,582 + -1.2 2,164,583 - -0.8 2,164,588 + +0.4 2,164,588 + +1.0 2,164,632 + +0.4 2,164,632 + -2.2 2,164,633 - -1.2 2,164,636 + -0.2 2,164,636 + +2.4 2,164,636 + -0.6 2,164,636 + +0.4 2,164,637 - +0.4 2,164,755 - -1.6 2,164,758 + -0.6 2,164,804 + +1.4 2,164,937 + +1.0 2,164,996 + NOLOHH_11180 0.10 +0.4 2,164,997 - NOLOHH_11180 0.10 -0.7 2,164,999 - NOLOHH_11180 0.11 -0.9 2,164,999 - NOLOHH_11180 0.11 -0.8 2,164,999 - NOLOHH_11180 0.11 +0.4 2,165,125 - NOLOHH_11180 0.28 +0.6 2,165,153 - NOLOHH_11180 0.32 +0.7 2,165,163 + NOLOHH_11180 0.33 -0.2 2,165,210 + NOLOHH_11180 0.39 -0.2 2,165,255 - NOLOHH_11180 0.46 -0.4 2,165,255 - NOLOHH_11180 0.46 +0.1 2,165,255 - NOLOHH_11180 0.46 -0.5 2,165,291 + NOLOHH_11180 0.51 -1.2 2,165,293 + NOLOHH_11180 0.51 +0.1 2,165,302 - NOLOHH_11180 0.52 +2.7 2,165,386 - NOLOHH_11180 0.64 -0.5 2,165,397 + NOLOHH_11180 0.65 +0.1 2,165,397 + NOLOHH_11180 0.65 +0.4 2,165,397 + NOLOHH_11180 0.65 +0.9 2,165,398 - NOLOHH_11180 0.65 +0.8 2,165,445 + NOLOHH_11180 0.72 -0.3 2,165,451 + NOLOHH_11180 0.72 -0.3 2,165,452 - NOLOHH_11180 0.73 -1.6 2,165,452 - NOLOHH_11180 0.73 +0.1 2,165,559 - NOLOHH_11180 0.87 -0.7 2,165,559 - NOLOHH_11180 0.87 +0.4 2,165,616 + +0.4 2,165,616 + -0.8 2,165,650 + +0.9 2,165,679 + -1.2 2,165,680 - -0.3 2,165,680 - -0.6 2,165,688 - -0.8 2,165,691 + +1.4 2,165,691 + -0.3 2,165,692 - -0.1 2,165,759 + -0.7 2,165,760 - +1.4 2,165,772 + +0.0 2,165,772 + +0.6 2,165,772 + -0.3 2,165,773 - -0.6 2,165,775 + -0.2 2,165,775 + +1.4 2,165,775 + +0.4
Or see this region's nucleotide sequence