Strain Fitness in Escherichia coli ECOR27 around NOLOHH_11175

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmetK and speA are separated by 794 nucleotidesspeA and NOLOHH_11180 are separated by 145 nucleotides NOLOHH_11170: metK - methionine adenosyltransferase, at 2,160,850 to 2,162,004 metK NOLOHH_11175: speA - biosynthetic arginine decarboxylase, at 2,162,799 to 2,164,775 speA NOLOHH_11180: NOLOHH_11180 - Lipoprotein, at 2,164,921 to 2,165,652 _11180 Position (kb) 2162 2163 2164 2165Strain fitness (log2 ratio) -2 -1 0 1 2at 2162.075 kb on - strandat 2162.254 kb on + strandat 2162.290 kb on + strandat 2162.310 kb on - strandat 2162.313 kb on + strandat 2162.392 kb on - strandat 2162.420 kb on + strandat 2162.421 kb on - strandat 2162.502 kb on + strandat 2162.503 kb on - strandat 2162.503 kb on - strandat 2162.517 kb on + strandat 2162.518 kb on - strandat 2162.555 kb on - strandat 2162.588 kb on + strandat 2162.589 kb on - strandat 2162.631 kb on + strandat 2162.631 kb on + strandat 2162.632 kb on - strandat 2162.722 kb on + strandat 2162.722 kb on + strandat 2162.769 kb on + strandat 2162.770 kb on - strandat 2162.776 kb on - strandat 2162.783 kb on + strandat 2162.798 kb on + strandat 2162.798 kb on + strandat 2162.799 kb on - strandat 2162.816 kb on + strandat 2162.852 kb on - strandat 2162.854 kb on + strandat 2162.854 kb on + strandat 2162.855 kb on - strandat 2162.855 kb on - strandat 2162.855 kb on - strandat 2162.855 kb on - strandat 2162.855 kb on - strandat 2162.909 kb on + strandat 2162.909 kb on + strandat 2162.909 kb on + strandat 2162.909 kb on + strandat 2162.913 kb on + strandat 2162.914 kb on - strandat 2162.914 kb on - strandat 2162.918 kb on + strandat 2162.937 kb on - strandat 2162.940 kb on + strandat 2162.940 kb on + strandat 2162.940 kb on + strandat 2162.940 kb on + strandat 2162.940 kb on + strandat 2162.940 kb on + strandat 2162.941 kb on - strandat 2162.941 kb on - strandat 2162.941 kb on - strandat 2162.943 kb on + strandat 2162.943 kb on + strandat 2162.943 kb on + strandat 2162.943 kb on + strandat 2162.943 kb on + strandat 2162.943 kb on + strandat 2162.944 kb on - strandat 2162.944 kb on - strandat 2163.139 kb on - strand, within speAat 2163.144 kb on + strand, within speAat 2163.156 kb on + strand, within speAat 2163.157 kb on - strand, within speAat 2163.157 kb on - strand, within speAat 2163.320 kb on + strand, within speAat 2163.333 kb on + strand, within speAat 2163.333 kb on + strand, within speAat 2163.334 kb on - strand, within speAat 2163.336 kb on - strand, within speAat 2163.349 kb on + strand, within speAat 2163.350 kb on - strand, within speAat 2163.350 kb on - strand, within speAat 2163.378 kb on + strand, within speAat 2163.547 kb on + strand, within speAat 2163.601 kb on + strand, within speAat 2163.678 kb on + strand, within speAat 2163.679 kb on - strand, within speAat 2163.747 kb on + strand, within speAat 2163.747 kb on + strand, within speAat 2163.786 kb on + strand, within speAat 2163.786 kb on + strand, within speAat 2163.786 kb on + strand, within speAat 2163.786 kb on + strand, within speAat 2163.942 kb on - strand, within speAat 2163.948 kb on + strand, within speAat 2163.948 kb on + strand, within speAat 2163.949 kb on - strand, within speAat 2163.950 kb on + strand, within speAat 2163.951 kb on - strand, within speAat 2164.119 kb on - strand, within speAat 2164.153 kb on - strand, within speAat 2164.238 kb on + strand, within speAat 2164.239 kb on - strand, within speAat 2164.239 kb on - strand, within speAat 2164.254 kb on + strand, within speAat 2164.255 kb on - strand, within speAat 2164.407 kb on + strand, within speAat 2164.408 kb on - strand, within speAat 2164.409 kb on + strand, within speAat 2164.410 kb on - strand, within speAat 2164.410 kb on - strand, within speAat 2164.453 kb on - strand, within speAat 2164.520 kb on + strand, within speAat 2164.521 kb on - strand, within speAat 2164.582 kb on + strandat 2164.583 kb on - strandat 2164.588 kb on + strandat 2164.588 kb on + strandat 2164.632 kb on + strandat 2164.632 kb on + strandat 2164.633 kb on - strandat 2164.636 kb on + strandat 2164.636 kb on + strandat 2164.636 kb on + strandat 2164.636 kb on + strandat 2164.637 kb on - strandat 2164.755 kb on - strandat 2164.758 kb on + strandat 2164.804 kb on + strandat 2164.937 kb on + strandat 2164.996 kb on + strand, within NOLOHH_11180at 2164.997 kb on - strand, within NOLOHH_11180at 2164.999 kb on - strand, within NOLOHH_11180at 2164.999 kb on - strand, within NOLOHH_11180at 2164.999 kb on - strand, within NOLOHH_11180at 2165.125 kb on - strand, within NOLOHH_11180at 2165.153 kb on - strand, within NOLOHH_11180at 2165.163 kb on + strand, within NOLOHH_11180at 2165.210 kb on + strand, within NOLOHH_11180at 2165.255 kb on - strand, within NOLOHH_11180at 2165.255 kb on - strand, within NOLOHH_11180at 2165.255 kb on - strand, within NOLOHH_11180at 2165.291 kb on + strand, within NOLOHH_11180at 2165.293 kb on + strand, within NOLOHH_11180at 2165.302 kb on - strand, within NOLOHH_11180at 2165.386 kb on - strand, within NOLOHH_11180at 2165.397 kb on + strand, within NOLOHH_11180at 2165.397 kb on + strand, within NOLOHH_11180at 2165.397 kb on + strand, within NOLOHH_11180at 2165.398 kb on - strand, within NOLOHH_11180at 2165.445 kb on + strand, within NOLOHH_11180at 2165.451 kb on + strand, within NOLOHH_11180at 2165.452 kb on - strand, within NOLOHH_11180at 2165.452 kb on - strand, within NOLOHH_11180at 2165.559 kb on - strand, within NOLOHH_11180at 2165.559 kb on - strand, within NOLOHH_11180at 2165.616 kb on + strandat 2165.616 kb on + strandat 2165.650 kb on + strandat 2165.679 kb on + strandat 2165.680 kb on - strandat 2165.680 kb on - strandat 2165.688 kb on - strandat 2165.691 kb on + strandat 2165.691 kb on + strandat 2165.692 kb on - strandat 2165.759 kb on + strandat 2165.760 kb on - strandat 2165.772 kb on + strandat 2165.772 kb on + strandat 2165.772 kb on + strandat 2165.773 kb on - strandat 2165.775 kb on + strandat 2165.775 kb on + strandat 2165.775 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
2,162,075 - -0.2
2,162,254 + -0.3
2,162,290 + -1.2
2,162,310 - -0.8
2,162,313 + +1.2
2,162,392 - +0.2
2,162,420 + -0.4
2,162,421 - -0.4
2,162,502 + -0.7
2,162,503 - -0.3
2,162,503 - +0.4
2,162,517 + -1.0
2,162,518 - -2.4
2,162,555 - -1.0
2,162,588 + +0.2
2,162,589 - -1.2
2,162,631 + -0.1
2,162,631 + +1.4
2,162,632 - -0.5
2,162,722 + -1.1
2,162,722 + -0.8
2,162,769 + +0.3
2,162,770 - -0.2
2,162,776 - -0.6
2,162,783 + -0.6
2,162,798 + -0.2
2,162,798 + -1.2
2,162,799 - -0.3
2,162,816 + -0.4
2,162,852 - +0.8
2,162,854 + -0.6
2,162,854 + -1.7
2,162,855 - -1.2
2,162,855 - +1.7
2,162,855 - -0.9
2,162,855 - +0.1
2,162,855 - +0.1
2,162,909 + +0.7
2,162,909 + -0.2
2,162,909 + +0.4
2,162,909 + -0.7
2,162,913 + -0.1
2,162,914 - -0.0
2,162,914 - -1.1
2,162,918 + +0.4
2,162,937 - +0.4
2,162,940 + +1.0
2,162,940 + -1.1
2,162,940 + +1.4
2,162,940 + +0.4
2,162,940 + +0.8
2,162,940 + +0.9
2,162,941 - -0.9
2,162,941 - +0.4
2,162,941 - -0.9
2,162,943 + +0.4
2,162,943 + +0.4
2,162,943 + -1.2
2,162,943 + -0.0
2,162,943 + +1.1
2,162,943 + -0.4
2,162,944 - +1.4
2,162,944 - +0.4
2,163,139 - speA NOLOHH_11175 0.17 -0.2
2,163,144 + speA NOLOHH_11175 0.17 +0.7
2,163,156 + speA NOLOHH_11175 0.18 -1.2
2,163,157 - speA NOLOHH_11175 0.18 +0.4
2,163,157 - speA NOLOHH_11175 0.18 +0.1
2,163,320 + speA NOLOHH_11175 0.26 -1.6
2,163,333 + speA NOLOHH_11175 0.27 -0.8
2,163,333 + speA NOLOHH_11175 0.27 -1.7
2,163,334 - speA NOLOHH_11175 0.27 -1.6
2,163,336 - speA NOLOHH_11175 0.27 +2.0
2,163,349 + speA NOLOHH_11175 0.28 -1.3
2,163,350 - speA NOLOHH_11175 0.28 -0.6
2,163,350 - speA NOLOHH_11175 0.28 -1.9
2,163,378 + speA NOLOHH_11175 0.29 -2.1
2,163,547 + speA NOLOHH_11175 0.38 +0.4
2,163,601 + speA NOLOHH_11175 0.41 -0.5
2,163,678 + speA NOLOHH_11175 0.44 +1.8
2,163,679 - speA NOLOHH_11175 0.45 +1.4
2,163,747 + speA NOLOHH_11175 0.48 -0.8
2,163,747 + speA NOLOHH_11175 0.48 -0.7
2,163,786 + speA NOLOHH_11175 0.50 -1.4
2,163,786 + speA NOLOHH_11175 0.50 -0.6
2,163,786 + speA NOLOHH_11175 0.50 +0.4
2,163,786 + speA NOLOHH_11175 0.50 +0.5
2,163,942 - speA NOLOHH_11175 0.58 +1.7
2,163,948 + speA NOLOHH_11175 0.58 -0.5
2,163,948 + speA NOLOHH_11175 0.58 -1.5
2,163,949 - speA NOLOHH_11175 0.58 -0.1
2,163,950 + speA NOLOHH_11175 0.58 +0.8
2,163,951 - speA NOLOHH_11175 0.58 +0.4
2,164,119 - speA NOLOHH_11175 0.67 -0.6
2,164,153 - speA NOLOHH_11175 0.68 +0.7
2,164,238 + speA NOLOHH_11175 0.73 +0.4
2,164,239 - speA NOLOHH_11175 0.73 -1.2
2,164,239 - speA NOLOHH_11175 0.73 -1.3
2,164,254 + speA NOLOHH_11175 0.74 +0.4
2,164,255 - speA NOLOHH_11175 0.74 +0.1
2,164,407 + speA NOLOHH_11175 0.81 -0.2
2,164,408 - speA NOLOHH_11175 0.81 -1.2
2,164,409 + speA NOLOHH_11175 0.81 -0.9
2,164,410 - speA NOLOHH_11175 0.81 -0.5
2,164,410 - speA NOLOHH_11175 0.81 -1.2
2,164,453 - speA NOLOHH_11175 0.84 +1.7
2,164,520 + speA NOLOHH_11175 0.87 -1.2
2,164,521 - speA NOLOHH_11175 0.87 -0.0
2,164,582 + -1.2
2,164,583 - -0.8
2,164,588 + +0.4
2,164,588 + +1.0
2,164,632 + +0.4
2,164,632 + -2.2
2,164,633 - -1.2
2,164,636 + -0.2
2,164,636 + +2.4
2,164,636 + -0.6
2,164,636 + +0.4
2,164,637 - +0.4
2,164,755 - -1.6
2,164,758 + -0.6
2,164,804 + +1.4
2,164,937 + +1.0
2,164,996 + NOLOHH_11180 0.10 +0.4
2,164,997 - NOLOHH_11180 0.10 -0.7
2,164,999 - NOLOHH_11180 0.11 -0.9
2,164,999 - NOLOHH_11180 0.11 -0.8
2,164,999 - NOLOHH_11180 0.11 +0.4
2,165,125 - NOLOHH_11180 0.28 +0.6
2,165,153 - NOLOHH_11180 0.32 +0.7
2,165,163 + NOLOHH_11180 0.33 -0.2
2,165,210 + NOLOHH_11180 0.39 -0.2
2,165,255 - NOLOHH_11180 0.46 -0.4
2,165,255 - NOLOHH_11180 0.46 +0.1
2,165,255 - NOLOHH_11180 0.46 -0.5
2,165,291 + NOLOHH_11180 0.51 -1.2
2,165,293 + NOLOHH_11180 0.51 +0.1
2,165,302 - NOLOHH_11180 0.52 +2.7
2,165,386 - NOLOHH_11180 0.64 -0.5
2,165,397 + NOLOHH_11180 0.65 +0.1
2,165,397 + NOLOHH_11180 0.65 +0.4
2,165,397 + NOLOHH_11180 0.65 +0.9
2,165,398 - NOLOHH_11180 0.65 +0.8
2,165,445 + NOLOHH_11180 0.72 -0.3
2,165,451 + NOLOHH_11180 0.72 -0.3
2,165,452 - NOLOHH_11180 0.73 -1.6
2,165,452 - NOLOHH_11180 0.73 +0.1
2,165,559 - NOLOHH_11180 0.87 -0.7
2,165,559 - NOLOHH_11180 0.87 +0.4
2,165,616 + +0.4
2,165,616 + -0.8
2,165,650 + +0.9
2,165,679 + -1.2
2,165,680 - -0.3
2,165,680 - -0.6
2,165,688 - -0.8
2,165,691 + +1.4
2,165,691 + -0.3
2,165,692 - -0.1
2,165,759 + -0.7
2,165,760 - +1.4
2,165,772 + +0.0
2,165,772 + +0.6
2,165,772 + -0.3
2,165,773 - -0.6
2,165,775 + -0.2
2,165,775 + +1.4
2,165,775 + +0.4

Or see this region's nucleotide sequence