Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ttdT and ttdB are separated by 47 nucleotides ttdB and ttdA overlap by 4 nucleotides
NOLOHH_10465: ttdT - L-tartrate/succinate antiporter, at 2,023,329 to 2,024,792
ttdT
NOLOHH_10470: ttdB - L(+)-tartrate dehydratase subunit beta, at 2,024,840 to 2,025,445
ttdB
NOLOHH_10475: ttdA - L(+)-tartrate dehydratase subunit alpha, at 2,025,442 to 2,026,353
ttdA
Position (kb)
2024
2025
2026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2023.875 kb on - strand, within ttdT at 2023.876 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.029 kb on + strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.030 kb on - strand, within ttdT at 2024.063 kb on + strand, within ttdT at 2024.064 kb on - strand, within ttdT at 2024.064 kb on - strand, within ttdT at 2024.139 kb on + strand, within ttdT at 2024.218 kb on + strand, within ttdT at 2024.219 kb on - strand, within ttdT at 2024.293 kb on + strand, within ttdT at 2024.293 kb on + strand, within ttdT at 2024.293 kb on + strand, within ttdT at 2024.297 kb on + strand, within ttdT at 2024.297 kb on + strand, within ttdT at 2024.297 kb on + strand, within ttdT at 2024.298 kb on - strand, within ttdT at 2024.298 kb on - strand, within ttdT at 2024.298 kb on - strand, within ttdT at 2024.331 kb on + strand, within ttdT at 2024.462 kb on + strand, within ttdT at 2024.463 kb on - strand, within ttdT at 2024.487 kb on - strand, within ttdT at 2024.541 kb on - strand, within ttdT at 2024.686 kb on + strand at 2024.696 kb on + strand at 2024.697 kb on - strand at 2024.697 kb on - strand at 2024.697 kb on - strand at 2024.697 kb on - strand at 2024.697 kb on - strand at 2024.727 kb on + strand at 2024.727 kb on + strand at 2024.727 kb on + strand at 2024.727 kb on + strand at 2024.727 kb on + strand at 2024.728 kb on - strand at 2024.736 kb on - strand at 2024.798 kb on + strand at 2024.798 kb on + strand at 2024.799 kb on - strand at 2024.799 kb on - strand at 2024.841 kb on + strand at 2024.841 kb on + strand at 2024.841 kb on + strand at 2024.842 kb on - strand at 2024.842 kb on - strand at 2024.842 kb on - strand at 2024.850 kb on + strand at 2024.851 kb on - strand at 2024.851 kb on - strand at 2024.851 kb on - strand at 2024.851 kb on - strand at 2024.851 kb on - strand at 2025.089 kb on + strand, within ttdB at 2025.090 kb on - strand, within ttdB at 2025.090 kb on - strand, within ttdB at 2025.205 kb on + strand, within ttdB at 2025.205 kb on + strand, within ttdB at 2025.206 kb on - strand, within ttdB at 2025.206 kb on - strand, within ttdB at 2025.375 kb on + strand, within ttdB at 2025.376 kb on - strand, within ttdB at 2025.397 kb on + strand at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.583 kb on + strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.584 kb on - strand, within ttdA at 2025.658 kb on + strand, within ttdA at 2025.658 kb on + strand, within ttdA at 2025.659 kb on - strand, within ttdA at 2025.659 kb on - strand, within ttdA at 2025.659 kb on - strand, within ttdA at 2025.730 kb on + strand, within ttdA at 2025.810 kb on + strand, within ttdA at 2025.905 kb on + strand, within ttdA at 2025.905 kb on + strand, within ttdA at 2025.906 kb on - strand, within ttdA at 2025.906 kb on - strand, within ttdA at 2025.906 kb on - strand, within ttdA at 2026.024 kb on + strand, within ttdA at 2026.024 kb on + strand, within ttdA at 2026.025 kb on - strand, within ttdA at 2026.066 kb on + strand, within ttdA at 2026.066 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.122 kb on + strand, within ttdA at 2026.123 kb on - strand, within ttdA at 2026.123 kb on - strand, within ttdA at 2026.191 kb on + strand, within ttdA at 2026.196 kb on + strand, within ttdA at 2026.196 kb on + strand, within ttdA at 2026.196 kb on + strand, within ttdA at 2026.197 kb on - strand, within ttdA at 2026.200 kb on + strand, within ttdA at 2026.243 kb on + strand, within ttdA at 2026.243 kb on + strand, within ttdA at 2026.243 kb on + strand, within ttdA at 2026.248 kb on + strand, within ttdA at 2026.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 2,023,875 - ttdT NOLOHH_10465 0.37 -0.7 2,023,876 + ttdT NOLOHH_10465 0.37 -0.4 2,024,029 + ttdT NOLOHH_10465 0.48 +0.3 2,024,029 + ttdT NOLOHH_10465 0.48 +0.8 2,024,029 + ttdT NOLOHH_10465 0.48 +1.6 2,024,030 - ttdT NOLOHH_10465 0.48 +0.7 2,024,030 - ttdT NOLOHH_10465 0.48 -0.6 2,024,030 - ttdT NOLOHH_10465 0.48 -1.0 2,024,063 + ttdT NOLOHH_10465 0.50 -0.6 2,024,064 - ttdT NOLOHH_10465 0.50 -0.0 2,024,064 - ttdT NOLOHH_10465 0.50 +1.0 2,024,139 + ttdT NOLOHH_10465 0.55 +0.7 2,024,218 + ttdT NOLOHH_10465 0.61 -0.1 2,024,219 - ttdT NOLOHH_10465 0.61 -2.4 2,024,293 + ttdT NOLOHH_10465 0.66 +0.7 2,024,293 + ttdT NOLOHH_10465 0.66 -0.2 2,024,293 + ttdT NOLOHH_10465 0.66 -0.7 2,024,297 + ttdT NOLOHH_10465 0.66 +0.8 2,024,297 + ttdT NOLOHH_10465 0.66 +0.9 2,024,297 + ttdT NOLOHH_10465 0.66 -1.4 2,024,298 - ttdT NOLOHH_10465 0.66 +0.7 2,024,298 - ttdT NOLOHH_10465 0.66 +0.6 2,024,298 - ttdT NOLOHH_10465 0.66 +1.0 2,024,331 + ttdT NOLOHH_10465 0.68 +0.7 2,024,462 + ttdT NOLOHH_10465 0.77 +0.0 2,024,463 - ttdT NOLOHH_10465 0.77 +0.4 2,024,487 - ttdT NOLOHH_10465 0.79 -0.6 2,024,541 - ttdT NOLOHH_10465 0.83 +0.3 2,024,686 + -1.4 2,024,696 + -0.6 2,024,697 - -0.7 2,024,697 - -2.0 2,024,697 - -0.3 2,024,697 - +0.8 2,024,697 - +1.4 2,024,727 + +0.0 2,024,727 + +0.7 2,024,727 + +0.1 2,024,727 + -0.6 2,024,727 + -0.8 2,024,728 - -0.0 2,024,736 - -0.2 2,024,798 + -0.1 2,024,798 + -0.9 2,024,799 - +1.0 2,024,799 - +0.6 2,024,841 + -0.9 2,024,841 + +0.1 2,024,841 + -0.6 2,024,842 - -0.6 2,024,842 - -0.4 2,024,842 - -1.1 2,024,850 + -0.6 2,024,851 - +0.8 2,024,851 - +0.0 2,024,851 - +0.4 2,024,851 - -0.6 2,024,851 - +0.6 2,025,089 + ttdB NOLOHH_10470 0.41 +1.4 2,025,090 - ttdB NOLOHH_10470 0.41 +0.4 2,025,090 - ttdB NOLOHH_10470 0.41 +0.0 2,025,205 + ttdB NOLOHH_10470 0.60 +0.1 2,025,205 + ttdB NOLOHH_10470 0.60 +0.4 2,025,206 - ttdB NOLOHH_10470 0.60 +0.4 2,025,206 - ttdB NOLOHH_10470 0.60 +2.4 2,025,375 + ttdB NOLOHH_10470 0.88 +1.1 2,025,376 - ttdB NOLOHH_10470 0.88 +0.1 2,025,397 + -0.1 2,025,583 + ttdA NOLOHH_10475 0.15 +0.0 2,025,583 + ttdA NOLOHH_10475 0.15 +0.1 2,025,583 + ttdA NOLOHH_10475 0.15 -0.7 2,025,583 + ttdA NOLOHH_10475 0.15 -0.6 2,025,583 + ttdA NOLOHH_10475 0.15 +1.8 2,025,583 + ttdA NOLOHH_10475 0.15 -0.5 2,025,583 + ttdA NOLOHH_10475 0.15 -0.7 2,025,583 + ttdA NOLOHH_10475 0.15 +0.4 2,025,583 + ttdA NOLOHH_10475 0.15 +0.8 2,025,584 - ttdA NOLOHH_10475 0.16 -0.5 2,025,584 - ttdA NOLOHH_10475 0.16 -0.3 2,025,584 - ttdA NOLOHH_10475 0.16 -0.7 2,025,584 - ttdA NOLOHH_10475 0.16 -0.2 2,025,584 - ttdA NOLOHH_10475 0.16 +0.4 2,025,584 - ttdA NOLOHH_10475 0.16 -0.1 2,025,584 - ttdA NOLOHH_10475 0.16 +0.4 2,025,584 - ttdA NOLOHH_10475 0.16 +0.0 2,025,658 + ttdA NOLOHH_10475 0.24 +0.7 2,025,658 + ttdA NOLOHH_10475 0.24 -1.2 2,025,659 - ttdA NOLOHH_10475 0.24 -0.2 2,025,659 - ttdA NOLOHH_10475 0.24 +0.4 2,025,659 - ttdA NOLOHH_10475 0.24 +0.0 2,025,730 + ttdA NOLOHH_10475 0.32 -1.5 2,025,810 + ttdA NOLOHH_10475 0.40 +1.4 2,025,905 + ttdA NOLOHH_10475 0.51 -0.1 2,025,905 + ttdA NOLOHH_10475 0.51 +0.8 2,025,906 - ttdA NOLOHH_10475 0.51 -0.2 2,025,906 - ttdA NOLOHH_10475 0.51 -1.2 2,025,906 - ttdA NOLOHH_10475 0.51 -0.5 2,026,024 + ttdA NOLOHH_10475 0.64 +0.6 2,026,024 + ttdA NOLOHH_10475 0.64 -1.3 2,026,025 - ttdA NOLOHH_10475 0.64 -0.4 2,026,066 + ttdA NOLOHH_10475 0.68 +0.4 2,026,066 + ttdA NOLOHH_10475 0.68 +0.2 2,026,122 + ttdA NOLOHH_10475 0.75 -1.5 2,026,122 + ttdA NOLOHH_10475 0.75 +0.1 2,026,122 + ttdA NOLOHH_10475 0.75 +0.4 2,026,122 + ttdA NOLOHH_10475 0.75 +0.1 2,026,122 + ttdA NOLOHH_10475 0.75 +0.6 2,026,122 + ttdA NOLOHH_10475 0.75 +0.0 2,026,122 + ttdA NOLOHH_10475 0.75 -0.1 2,026,123 - ttdA NOLOHH_10475 0.75 -0.4 2,026,123 - ttdA NOLOHH_10475 0.75 +2.4 2,026,191 + ttdA NOLOHH_10475 0.82 +0.4 2,026,196 + ttdA NOLOHH_10475 0.83 +1.0 2,026,196 + ttdA NOLOHH_10475 0.83 -0.2 2,026,196 + ttdA NOLOHH_10475 0.83 -0.2 2,026,197 - ttdA NOLOHH_10475 0.83 -0.3 2,026,200 + ttdA NOLOHH_10475 0.83 -1.2 2,026,243 + ttdA NOLOHH_10475 0.88 -1.0 2,026,243 + ttdA NOLOHH_10475 0.88 -0.3 2,026,243 + ttdA NOLOHH_10475 0.88 +0.1 2,026,248 + ttdA NOLOHH_10475 0.88 -0.9 2,026,339 - -1.3
Or see this region's nucleotide sequence