Strain Fitness in Escherichia coli ECOR27 around NOLOHH_10455

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaG and rpsU are separated by 110 nucleotidesrpsU and tsaD are separated by 237 nucleotides NOLOHH_10450: dnaG - DNA primase, at 2,019,964 to 2,021,709 dnaG NOLOHH_10455: rpsU - 30S ribosomal protein S21, at 2,021,820 to 2,022,035 rpsU NOLOHH_10460: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 2,022,273 to 2,023,286 tsaD Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -1 0 1at 2021.822 kb on - strandat 2022.165 kb on + strandat 2022.165 kb on + strandat 2022.180 kb on + strandat 2022.181 kb on - strandat 2022.181 kb on - strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.182 kb on + strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.183 kb on - strandat 2022.216 kb on + strandat 2022.216 kb on + strandat 2022.216 kb on + strandat 2022.237 kb on + strandat 2022.252 kb on + strandat 2022.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,021,822 - +0.4
2,022,165 + -0.2
2,022,165 + -0.9
2,022,180 + +0.4
2,022,181 - -1.6
2,022,181 - -1.0
2,022,182 + -0.6
2,022,182 + +0.0
2,022,182 + -0.7
2,022,182 + -0.2
2,022,183 - -1.0
2,022,183 - -0.6
2,022,183 - +0.2
2,022,183 - -1.6
2,022,183 - +0.1
2,022,183 - -0.8
2,022,216 + +1.1
2,022,216 + -0.9
2,022,216 + +0.9
2,022,237 + +0.0
2,022,252 + -1.3
2,022,252 + +0.4

Or see this region's nucleotide sequence