Strain Fitness in Escherichia coli ECOR27 around NOLOHH_10415

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntebgR and ygjH are separated by 218 nucleotidesygjH and ygjG are separated by 41 nucleotidesygjG and aer are separated by 306 nucleotides NOLOHH_10405: ebgR - transcriptional regulator EbgR, at 2,010,379 to 2,011,362 ebgR NOLOHH_10410: ygjH - tRNA-binding protein, at 2,011,581 to 2,011,913 ygjH NOLOHH_10415: ygjG - putrescine aminotransferase, at 2,011,955 to 2,013,445 ygjG NOLOHH_10420: aer - aerotaxis sensor receptor Aer, at 2,013,752 to 2,015,272 aer Position (kb) 2011 2012 2013 2014Strain fitness (log2 ratio) -2 -1 0 1 2at 2011.006 kb on + strand, within ebgRat 2011.006 kb on + strand, within ebgRat 2011.118 kb on + strand, within ebgRat 2011.119 kb on - strand, within ebgRat 2011.121 kb on + strand, within ebgRat 2011.151 kb on + strand, within ebgRat 2011.151 kb on + strand, within ebgRat 2011.151 kb on + strand, within ebgRat 2011.151 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.157 kb on + strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.158 kb on - strand, within ebgRat 2011.170 kb on + strand, within ebgRat 2011.170 kb on + strand, within ebgRat 2011.171 kb on - strand, within ebgRat 2011.223 kb on + strand, within ebgRat 2011.298 kb on - strandat 2011.309 kb on + strandat 2011.325 kb on - strandat 2011.351 kb on + strandat 2011.351 kb on + strandat 2011.352 kb on - strandat 2011.402 kb on + strandat 2011.403 kb on - strandat 2011.440 kb on + strandat 2011.470 kb on - strandat 2011.596 kb on + strandat 2011.596 kb on + strandat 2011.674 kb on + strand, within ygjHat 2011.674 kb on + strand, within ygjHat 2011.674 kb on + strand, within ygjHat 2011.674 kb on + strand, within ygjHat 2011.674 kb on + strand, within ygjHat 2011.675 kb on - strand, within ygjHat 2011.675 kb on - strand, within ygjHat 2011.675 kb on - strand, within ygjHat 2011.675 kb on - strand, within ygjHat 2011.675 kb on - strand, within ygjHat 2011.681 kb on + strand, within ygjHat 2011.681 kb on + strand, within ygjHat 2011.682 kb on - strand, within ygjHat 2011.734 kb on + strand, within ygjHat 2011.734 kb on + strand, within ygjHat 2011.734 kb on + strand, within ygjHat 2011.734 kb on + strand, within ygjHat 2011.735 kb on - strand, within ygjHat 2011.738 kb on - strand, within ygjHat 2011.777 kb on + strand, within ygjHat 2011.777 kb on + strand, within ygjHat 2011.777 kb on + strand, within ygjHat 2011.777 kb on + strand, within ygjHat 2011.778 kb on - strand, within ygjHat 2011.909 kb on + strandat 2011.909 kb on + strandat 2011.909 kb on + strandat 2011.911 kb on + strandat 2011.953 kb on + strandat 2011.954 kb on - strandat 2011.956 kb on + strandat 2011.956 kb on + strandat 2011.957 kb on - strandat 2011.957 kb on - strandat 2011.957 kb on - strandat 2011.957 kb on - strandat 2011.974 kb on - strandat 2011.974 kb on - strandat 2011.974 kb on - strandat 2011.996 kb on + strandat 2012.129 kb on - strand, within ygjGat 2012.177 kb on - strand, within ygjGat 2012.243 kb on - strand, within ygjGat 2012.347 kb on + strand, within ygjGat 2012.348 kb on - strand, within ygjGat 2012.463 kb on - strand, within ygjGat 2012.463 kb on - strand, within ygjGat 2012.463 kb on - strand, within ygjGat 2012.516 kb on + strand, within ygjGat 2012.516 kb on + strand, within ygjGat 2012.516 kb on + strand, within ygjGat 2012.516 kb on + strand, within ygjGat 2012.517 kb on - strand, within ygjGat 2012.555 kb on + strand, within ygjGat 2012.555 kb on + strand, within ygjGat 2012.555 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.560 kb on + strand, within ygjGat 2012.561 kb on - strand, within ygjGat 2012.561 kb on - strand, within ygjGat 2012.561 kb on - strand, within ygjGat 2012.561 kb on - strand, within ygjGat 2012.561 kb on - strand, within ygjGat 2012.565 kb on - strand, within ygjGat 2012.788 kb on + strand, within ygjGat 2012.821 kb on + strand, within ygjGat 2012.907 kb on + strand, within ygjGat 2012.908 kb on - strand, within ygjGat 2012.908 kb on - strand, within ygjGat 2013.112 kb on + strand, within ygjGat 2013.112 kb on + strand, within ygjGat 2013.112 kb on + strand, within ygjGat 2013.113 kb on - strand, within ygjGat 2013.113 kb on - strand, within ygjGat 2013.113 kb on - strand, within ygjGat 2013.113 kb on - strand, within ygjGat 2013.116 kb on + strand, within ygjGat 2013.117 kb on - strand, within ygjGat 2013.117 kb on - strand, within ygjGat 2013.137 kb on + strand, within ygjGat 2013.138 kb on - strand, within ygjGat 2013.177 kb on + strand, within ygjGat 2013.213 kb on + strand, within ygjGat 2013.233 kb on - strand, within ygjGat 2013.374 kb on + strandat 2013.378 kb on + strandat 2013.378 kb on + strandat 2013.379 kb on - strandat 2013.379 kb on - strandat 2013.379 kb on - strandat 2013.551 kb on + strandat 2013.552 kb on - strandat 2013.575 kb on + strandat 2013.730 kb on - strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.836 kb on + strandat 2013.837 kb on - strandat 2013.837 kb on - strandat 2013.838 kb on + strandat 2013.851 kb on - strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.894 kb on + strandat 2013.895 kb on - strandat 2013.895 kb on - strandat 2014.029 kb on - strand, within aerat 2014.082 kb on + strand, within aerat 2014.082 kb on + strand, within aerat 2014.082 kb on + strand, within aerat 2014.082 kb on + strand, within aerat 2014.082 kb on + strand, within aerat 2014.083 kb on - strand, within aerat 2014.083 kb on - strand, within aerat 2014.083 kb on - strand, within aerat 2014.083 kb on - strand, within aerat 2014.083 kb on - strand, within aerat 2014.084 kb on + strand, within aerat 2014.085 kb on - strand, within aerat 2014.085 kb on - strand, within aerat 2014.085 kb on - strand, within aerat 2014.085 kb on - strand, within aerat 2014.085 kb on - strand, within aerat 2014.085 kb on - strand, within aerat 2014.140 kb on - strand, within aerat 2014.140 kb on - strand, within aerat 2014.162 kb on + strand, within aerat 2014.162 kb on + strand, within aerat 2014.168 kb on + strand, within aerat 2014.168 kb on + strand, within aerat 2014.168 kb on + strand, within aerat 2014.174 kb on + strand, within aerat 2014.174 kb on + strand, within aerat 2014.175 kb on - strand, within aerat 2014.180 kb on + strand, within aerat 2014.180 kb on + strand, within aerat 2014.271 kb on - strand, within aerat 2014.271 kb on - strand, within aerat 2014.319 kb on + strand, within aerat 2014.319 kb on + strand, within aerat 2014.320 kb on - strand, within aerat 2014.320 kb on - strand, within aerat 2014.342 kb on - strand, within aerat 2014.342 kb on - strand, within aerat 2014.432 kb on + strand, within aerat 2014.432 kb on + strand, within aerat 2014.433 kb on - strand, within aerat 2014.435 kb on + strand, within aerat 2014.435 kb on + strand, within aerat 2014.435 kb on + strand, within aerat 2014.436 kb on - strand, within aerat 2014.436 kb on - strand, within aerat 2014.436 kb on - strand, within aer

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,011,006 + ebgR NOLOHH_10405 0.64 -1.6
2,011,006 + ebgR NOLOHH_10405 0.64 +0.4
2,011,118 + ebgR NOLOHH_10405 0.75 -0.3
2,011,119 - ebgR NOLOHH_10405 0.75 -0.9
2,011,121 + ebgR NOLOHH_10405 0.75 +0.4
2,011,151 + ebgR NOLOHH_10405 0.78 +0.0
2,011,151 + ebgR NOLOHH_10405 0.78 -0.2
2,011,151 + ebgR NOLOHH_10405 0.78 +0.1
2,011,151 + ebgR NOLOHH_10405 0.78 -1.3
2,011,157 + ebgR NOLOHH_10405 0.79 -0.1
2,011,157 + ebgR NOLOHH_10405 0.79 -0.4
2,011,157 + ebgR NOLOHH_10405 0.79 -1.6
2,011,157 + ebgR NOLOHH_10405 0.79 -0.2
2,011,157 + ebgR NOLOHH_10405 0.79 -1.4
2,011,157 + ebgR NOLOHH_10405 0.79 -1.0
2,011,158 - ebgR NOLOHH_10405 0.79 -1.3
2,011,158 - ebgR NOLOHH_10405 0.79 -0.8
2,011,158 - ebgR NOLOHH_10405 0.79 +0.4
2,011,158 - ebgR NOLOHH_10405 0.79 -1.0
2,011,158 - ebgR NOLOHH_10405 0.79 +2.4
2,011,158 - ebgR NOLOHH_10405 0.79 -1.9
2,011,170 + ebgR NOLOHH_10405 0.80 +0.4
2,011,170 + ebgR NOLOHH_10405 0.80 +0.1
2,011,171 - ebgR NOLOHH_10405 0.80 -0.1
2,011,223 + ebgR NOLOHH_10405 0.86 -0.2
2,011,298 - -0.6
2,011,309 + +0.0
2,011,325 - +1.3
2,011,351 + -0.3
2,011,351 + +0.7
2,011,352 - +0.4
2,011,402 + -0.9
2,011,403 - +0.4
2,011,440 + -0.3
2,011,470 - -0.4
2,011,596 + +0.4
2,011,596 + -0.1
2,011,674 + ygjH NOLOHH_10410 0.28 -0.5
2,011,674 + ygjH NOLOHH_10410 0.28 +0.4
2,011,674 + ygjH NOLOHH_10410 0.28 -0.0
2,011,674 + ygjH NOLOHH_10410 0.28 +0.4
2,011,674 + ygjH NOLOHH_10410 0.28 -1.7
2,011,675 - ygjH NOLOHH_10410 0.28 -0.3
2,011,675 - ygjH NOLOHH_10410 0.28 +2.2
2,011,675 - ygjH NOLOHH_10410 0.28 -0.2
2,011,675 - ygjH NOLOHH_10410 0.28 -1.4
2,011,675 - ygjH NOLOHH_10410 0.28 +2.0
2,011,681 + ygjH NOLOHH_10410 0.30 -0.7
2,011,681 + ygjH NOLOHH_10410 0.30 -2.6
2,011,682 - ygjH NOLOHH_10410 0.30 +1.4
2,011,734 + ygjH NOLOHH_10410 0.46 -1.9
2,011,734 + ygjH NOLOHH_10410 0.46 -0.6
2,011,734 + ygjH NOLOHH_10410 0.46 +0.3
2,011,734 + ygjH NOLOHH_10410 0.46 -0.2
2,011,735 - ygjH NOLOHH_10410 0.46 -0.9
2,011,738 - ygjH NOLOHH_10410 0.47 -0.6
2,011,777 + ygjH NOLOHH_10410 0.59 -0.4
2,011,777 + ygjH NOLOHH_10410 0.59 +0.5
2,011,777 + ygjH NOLOHH_10410 0.59 +0.1
2,011,777 + ygjH NOLOHH_10410 0.59 -0.0
2,011,778 - ygjH NOLOHH_10410 0.59 -1.2
2,011,909 + +0.4
2,011,909 + -0.9
2,011,909 + -1.2
2,011,911 + +0.3
2,011,953 + +0.0
2,011,954 - -0.0
2,011,956 + -0.6
2,011,956 + +0.1
2,011,957 - +0.1
2,011,957 - +0.3
2,011,957 - +0.9
2,011,957 - +0.4
2,011,974 - +0.4
2,011,974 - +0.1
2,011,974 - +0.8
2,011,996 + +0.0
2,012,129 - ygjG NOLOHH_10415 0.12 -0.6
2,012,177 - ygjG NOLOHH_10415 0.15 -1.4
2,012,243 - ygjG NOLOHH_10415 0.19 -0.1
2,012,347 + ygjG NOLOHH_10415 0.26 +0.2
2,012,348 - ygjG NOLOHH_10415 0.26 -1.7
2,012,463 - ygjG NOLOHH_10415 0.34 -1.6
2,012,463 - ygjG NOLOHH_10415 0.34 +0.5
2,012,463 - ygjG NOLOHH_10415 0.34 -0.5
2,012,516 + ygjG NOLOHH_10415 0.38 +0.6
2,012,516 + ygjG NOLOHH_10415 0.38 -0.9
2,012,516 + ygjG NOLOHH_10415 0.38 -0.7
2,012,516 + ygjG NOLOHH_10415 0.38 +1.4
2,012,517 - ygjG NOLOHH_10415 0.38 +0.7
2,012,555 + ygjG NOLOHH_10415 0.40 -0.8
2,012,555 + ygjG NOLOHH_10415 0.40 +0.4
2,012,555 + ygjG NOLOHH_10415 0.40 +0.2
2,012,560 + ygjG NOLOHH_10415 0.41 -0.6
2,012,560 + ygjG NOLOHH_10415 0.41 +0.4
2,012,560 + ygjG NOLOHH_10415 0.41 +0.1
2,012,560 + ygjG NOLOHH_10415 0.41 +0.3
2,012,560 + ygjG NOLOHH_10415 0.41 -0.5
2,012,560 + ygjG NOLOHH_10415 0.41 -1.1
2,012,560 + ygjG NOLOHH_10415 0.41 +0.4
2,012,560 + ygjG NOLOHH_10415 0.41 +0.7
2,012,560 + ygjG NOLOHH_10415 0.41 +0.2
2,012,561 - ygjG NOLOHH_10415 0.41 +0.4
2,012,561 - ygjG NOLOHH_10415 0.41 -0.6
2,012,561 - ygjG NOLOHH_10415 0.41 -0.8
2,012,561 - ygjG NOLOHH_10415 0.41 +0.4
2,012,561 - ygjG NOLOHH_10415 0.41 +0.4
2,012,565 - ygjG NOLOHH_10415 0.41 +0.2
2,012,788 + ygjG NOLOHH_10415 0.56 -0.0
2,012,821 + ygjG NOLOHH_10415 0.58 +0.8
2,012,907 + ygjG NOLOHH_10415 0.64 -0.4
2,012,908 - ygjG NOLOHH_10415 0.64 +1.6
2,012,908 - ygjG NOLOHH_10415 0.64 +0.7
2,013,112 + ygjG NOLOHH_10415 0.78 +0.9
2,013,112 + ygjG NOLOHH_10415 0.78 +2.2
2,013,112 + ygjG NOLOHH_10415 0.78 -0.2
2,013,113 - ygjG NOLOHH_10415 0.78 -0.3
2,013,113 - ygjG NOLOHH_10415 0.78 +0.7
2,013,113 - ygjG NOLOHH_10415 0.78 +0.7
2,013,113 - ygjG NOLOHH_10415 0.78 +0.6
2,013,116 + ygjG NOLOHH_10415 0.78 -0.7
2,013,117 - ygjG NOLOHH_10415 0.78 -0.7
2,013,117 - ygjG NOLOHH_10415 0.78 +0.0
2,013,137 + ygjG NOLOHH_10415 0.79 +1.1
2,013,138 - ygjG NOLOHH_10415 0.79 -0.2
2,013,177 + ygjG NOLOHH_10415 0.82 -1.4
2,013,213 + ygjG NOLOHH_10415 0.84 +0.2
2,013,233 - ygjG NOLOHH_10415 0.86 -0.8
2,013,374 + -0.2
2,013,378 + -0.8
2,013,378 + +0.4
2,013,379 - +0.0
2,013,379 - -2.2
2,013,379 - +0.8
2,013,551 + +0.4
2,013,552 - -1.2
2,013,575 + -0.1
2,013,730 - +0.4
2,013,836 + +0.1
2,013,836 + -1.3
2,013,836 + +0.9
2,013,836 + +0.4
2,013,836 + +0.3
2,013,836 + +0.2
2,013,836 + +1.4
2,013,837 - +1.4
2,013,837 - -2.0
2,013,838 + +1.3
2,013,851 - -1.2
2,013,894 + -0.6
2,013,894 + -0.0
2,013,894 + +0.5
2,013,894 + +2.0
2,013,894 + -0.1
2,013,894 + +1.4
2,013,894 + +0.4
2,013,894 + +0.2
2,013,895 - +0.4
2,013,895 - +0.6
2,014,029 - aer NOLOHH_10420 0.18 +0.8
2,014,082 + aer NOLOHH_10420 0.22 +0.4
2,014,082 + aer NOLOHH_10420 0.22 +0.4
2,014,082 + aer NOLOHH_10420 0.22 -0.2
2,014,082 + aer NOLOHH_10420 0.22 +0.7
2,014,082 + aer NOLOHH_10420 0.22 +0.2
2,014,083 - aer NOLOHH_10420 0.22 +0.3
2,014,083 - aer NOLOHH_10420 0.22 -1.2
2,014,083 - aer NOLOHH_10420 0.22 -0.3
2,014,083 - aer NOLOHH_10420 0.22 +0.3
2,014,083 - aer NOLOHH_10420 0.22 -0.7
2,014,084 + aer NOLOHH_10420 0.22 -0.2
2,014,085 - aer NOLOHH_10420 0.22 +0.7
2,014,085 - aer NOLOHH_10420 0.22 -0.7
2,014,085 - aer NOLOHH_10420 0.22 -0.2
2,014,085 - aer NOLOHH_10420 0.22 +0.3
2,014,085 - aer NOLOHH_10420 0.22 -1.9
2,014,085 - aer NOLOHH_10420 0.22 -1.2
2,014,140 - aer NOLOHH_10420 0.26 +0.2
2,014,140 - aer NOLOHH_10420 0.26 +1.7
2,014,162 + aer NOLOHH_10420 0.27 -1.3
2,014,162 + aer NOLOHH_10420 0.27 -0.8
2,014,168 + aer NOLOHH_10420 0.27 -1.2
2,014,168 + aer NOLOHH_10420 0.27 +0.1
2,014,168 + aer NOLOHH_10420 0.27 +0.2
2,014,174 + aer NOLOHH_10420 0.28 +0.3
2,014,174 + aer NOLOHH_10420 0.28 -1.3
2,014,175 - aer NOLOHH_10420 0.28 +0.7
2,014,180 + aer NOLOHH_10420 0.28 +0.4
2,014,180 + aer NOLOHH_10420 0.28 -0.1
2,014,271 - aer NOLOHH_10420 0.34 +0.7
2,014,271 - aer NOLOHH_10420 0.34 -0.8
2,014,319 + aer NOLOHH_10420 0.37 -0.0
2,014,319 + aer NOLOHH_10420 0.37 -0.1
2,014,320 - aer NOLOHH_10420 0.37 -0.8
2,014,320 - aer NOLOHH_10420 0.37 +0.2
2,014,342 - aer NOLOHH_10420 0.39 -0.2
2,014,342 - aer NOLOHH_10420 0.39 -0.2
2,014,432 + aer NOLOHH_10420 0.45 +0.4
2,014,432 + aer NOLOHH_10420 0.45 +0.4
2,014,433 - aer NOLOHH_10420 0.45 +0.8
2,014,435 + aer NOLOHH_10420 0.45 -0.9
2,014,435 + aer NOLOHH_10420 0.45 -1.2
2,014,435 + aer NOLOHH_10420 0.45 -0.9
2,014,436 - aer NOLOHH_10420 0.45 +0.4
2,014,436 - aer NOLOHH_10420 0.45 -0.3
2,014,436 - aer NOLOHH_10420 0.45 -0.6

Or see this region's nucleotide sequence