Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhaB and tdcA are separated by 788 nucleotides tdcA and tdcB are separated by 98 nucleotides
NOLOHH_10170: yhaB - Uncharacterized protein YhaB, at 1,959,202 to 1,959,741
yhaB
NOLOHH_10175: tdcA - transcriptional regulator TdcA, at 1,960,530 to 1,961,468
tdcA
NOLOHH_10180: tdcB - bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB, at 1,961,567 to 1,962,556
tdcB
Position (kb) 1960
1961
1962 Strain fitness (log2 ratio) -1
0
1
2 at 1959.587 kb on - strand, within yhaB at 1959.666 kb on + strand, within yhaB at 1959.776 kb on - strand at 1959.784 kb on - strand at 1959.828 kb on + strand at 1959.868 kb on - strand at 1960.190 kb on - strand at 1960.288 kb on - strand at 1960.517 kb on - strand at 1960.521 kb on + strand at 1960.586 kb on + strand at 1960.587 kb on - strand at 1960.799 kb on + strand, within tdcA at 1960.800 kb on - strand, within tdcA at 1960.863 kb on - strand, within tdcA at 1960.916 kb on + strand, within tdcA at 1960.917 kb on - strand, within tdcA at 1960.917 kb on - strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.921 kb on - strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1961.056 kb on + strand, within tdcA at 1961.135 kb on + strand, within tdcA at 1961.135 kb on + strand, within tdcA at 1961.136 kb on - strand, within tdcA at 1961.136 kb on - strand, within tdcA at 1961.162 kb on + strand, within tdcA at 1961.163 kb on - strand, within tdcA at 1961.165 kb on + strand, within tdcA at 1961.165 kb on + strand, within tdcA at 1961.166 kb on - strand, within tdcA at 1961.257 kb on + strand, within tdcA at 1961.310 kb on - strand, within tdcA at 1961.565 kb on + strand at 1961.670 kb on - strand, within tdcB at 1961.759 kb on - strand, within tdcB at 1961.870 kb on - strand, within tdcB at 1961.924 kb on + strand, within tdcB at 1962.190 kb on - strand, within tdcB at 1962.304 kb on - strand, within tdcB at 1962.308 kb on + strand, within tdcB at 1962.465 kb on - strand at 1962.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 1,959,587 - yhaB NOLOHH_10170 0.71 -0.8 1,959,666 + yhaB NOLOHH_10170 0.86 +0.2 1,959,776 - -0.1 1,959,784 - +0.8 1,959,828 + +0.3 1,959,868 - -0.8 1,960,190 - +1.1 1,960,288 - +0.6 1,960,517 - +0.6 1,960,521 + +0.4 1,960,586 + -0.7 1,960,587 - +0.3 1,960,799 + tdcA NOLOHH_10175 0.29 +0.0 1,960,800 - tdcA NOLOHH_10175 0.29 -0.3 1,960,863 - tdcA NOLOHH_10175 0.35 -0.1 1,960,916 + tdcA NOLOHH_10175 0.41 -0.4 1,960,917 - tdcA NOLOHH_10175 0.41 -0.6 1,960,917 - tdcA NOLOHH_10175 0.41 -1.3 1,960,920 + tdcA NOLOHH_10175 0.42 +0.1 1,960,920 + tdcA NOLOHH_10175 0.42 +0.7 1,960,920 + tdcA NOLOHH_10175 0.42 +0.0 1,960,920 + tdcA NOLOHH_10175 0.42 +1.0 1,960,921 - tdcA NOLOHH_10175 0.42 -0.6 1,960,990 + tdcA NOLOHH_10175 0.49 +0.9 1,960,990 + tdcA NOLOHH_10175 0.49 +0.3 1,960,990 + tdcA NOLOHH_10175 0.49 -0.1 1,960,990 + tdcA NOLOHH_10175 0.49 -1.6 1,961,056 + tdcA NOLOHH_10175 0.56 -1.4 1,961,135 + tdcA NOLOHH_10175 0.64 +1.4 1,961,135 + tdcA NOLOHH_10175 0.64 -0.6 1,961,136 - tdcA NOLOHH_10175 0.65 +0.4 1,961,136 - tdcA NOLOHH_10175 0.65 -1.3 1,961,162 + tdcA NOLOHH_10175 0.67 -1.2 1,961,163 - tdcA NOLOHH_10175 0.67 -1.4 1,961,165 + tdcA NOLOHH_10175 0.68 +0.4 1,961,165 + tdcA NOLOHH_10175 0.68 -1.6 1,961,166 - tdcA NOLOHH_10175 0.68 -1.2 1,961,257 + tdcA NOLOHH_10175 0.77 -1.1 1,961,310 - tdcA NOLOHH_10175 0.83 +0.1 1,961,565 + +2.4 1,961,670 - tdcB NOLOHH_10180 0.10 -0.2 1,961,759 - tdcB NOLOHH_10180 0.19 -1.0 1,961,870 - tdcB NOLOHH_10180 0.31 +0.2 1,961,924 + tdcB NOLOHH_10180 0.36 +0.0 1,962,190 - tdcB NOLOHH_10180 0.63 -0.4 1,962,304 - tdcB NOLOHH_10180 0.74 -1.4 1,962,308 + tdcB NOLOHH_10180 0.75 +0.6 1,962,465 - -0.7 1,962,466 + -0.1
Or see this region's nucleotide sequence