Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09130

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsL and rpsG are separated by 96 nucleotidesrpsG and fusA are separated by 96 nucleotidesfusA and tufA_E379K are separated by 70 nucleotides NOLOHH_09120: rpsL - 30S ribosomal protein S12, at 1,773,272 to 1,773,646 rpsL NOLOHH_09125: rpsG - 30S ribosomal protein S7, at 1,773,743 to 1,774,213 rpsG NOLOHH_09130: fusA - elongation factor G, at 1,774,310 to 1,776,424 fusA NOLOHH_09135: tufA_E379K - translation elongation factor EF-Tu 1, at 1,776,495 to 1,777,679 _E379K Position (kb) 1774 1775 1776 1777Strain fitness (log2 ratio) -1 0 1at 1774.228 kb on + strandat 1774.275 kb on + strandat 1774.275 kb on + strandat 1774.275 kb on + strandat 1776.477 kb on - strandat 1776.478 kb on + strandat 1776.479 kb on - strandat 1776.481 kb on + strandat 1776.488 kb on + strandat 1776.488 kb on + strandat 1776.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,774,228 + +0.5
1,774,275 + -1.4
1,774,275 + -0.5
1,774,275 + +0.5
1,776,477 - +0.5
1,776,478 + -1.5
1,776,479 - +0.5
1,776,481 + -1.1
1,776,488 + -1.5
1,776,488 + +0.5
1,776,489 - -0.5

Or see this region's nucleotide sequence