Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaV and yiaU overlap by 4 nucleotides yiaU and yiaT are separated by 123 nucleotides yiaT and hybA1 are separated by 129 nucleotides
NOLOHH_07770: yiaV - Inner membrane protein YiaV, at 1,489,452 to 1,490,588
yiaV
NOLOHH_07775: yiaU - Uncharacterized HTH-type transcriptional regulator YiaU, at 1,490,585 to 1,491,559
yiaU
NOLOHH_07780: yiaT - Putative outer membrane protein YiaT, at 1,491,683 to 1,492,423
yiaT
NOLOHH_07785: hybA1 - Non-reducing end beta-L-arabinofuranosidase, at 1,492,553 to 1,494,523
hybA1
Position (kb)
1490
1491
1492 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1489.596 kb on + strand, within yiaV at 1489.596 kb on + strand, within yiaV at 1489.609 kb on - strand, within yiaV at 1489.609 kb on - strand, within yiaV at 1489.611 kb on - strand, within yiaV at 1489.640 kb on + strand, within yiaV at 1489.641 kb on - strand, within yiaV at 1489.796 kb on + strand, within yiaV at 1489.797 kb on - strand, within yiaV at 1489.797 kb on - strand, within yiaV at 1489.822 kb on + strand, within yiaV at 1489.884 kb on + strand, within yiaV at 1489.885 kb on - strand, within yiaV at 1489.893 kb on + strand, within yiaV at 1490.094 kb on + strand, within yiaV at 1490.094 kb on + strand, within yiaV at 1490.094 kb on + strand, within yiaV at 1490.095 kb on - strand, within yiaV at 1490.095 kb on - strand, within yiaV at 1490.095 kb on - strand, within yiaV at 1490.095 kb on - strand, within yiaV at 1490.113 kb on + strand, within yiaV at 1490.113 kb on + strand, within yiaV at 1490.136 kb on + strand, within yiaV at 1490.136 kb on + strand, within yiaV at 1490.136 kb on + strand, within yiaV at 1490.137 kb on - strand, within yiaV at 1490.137 kb on - strand, within yiaV at 1490.169 kb on + strand, within yiaV at 1490.169 kb on + strand, within yiaV at 1490.169 kb on + strand, within yiaV at 1490.170 kb on - strand, within yiaV at 1490.170 kb on - strand, within yiaV at 1490.170 kb on - strand, within yiaV at 1490.170 kb on - strand, within yiaV at 1490.188 kb on + strand, within yiaV at 1490.189 kb on - strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.207 kb on + strand, within yiaV at 1490.208 kb on - strand, within yiaV at 1490.297 kb on + strand, within yiaV at 1490.298 kb on - strand, within yiaV at 1490.298 kb on - strand, within yiaV at 1490.298 kb on - strand, within yiaV at 1490.313 kb on - strand, within yiaV at 1490.317 kb on + strand, within yiaV at 1490.317 kb on + strand, within yiaV at 1490.342 kb on + strand, within yiaV at 1490.367 kb on + strand, within yiaV at 1490.386 kb on + strand, within yiaV at 1490.387 kb on - strand, within yiaV at 1490.468 kb on - strand, within yiaV at 1490.468 kb on - strand, within yiaV at 1490.477 kb on + strand at 1490.477 kb on + strand at 1490.477 kb on + strand at 1490.477 kb on + strand at 1490.478 kb on - strand at 1490.478 kb on - strand at 1490.478 kb on - strand at 1490.478 kb on - strand at 1490.500 kb on - strand at 1490.542 kb on + strand at 1490.542 kb on + strand at 1490.543 kb on - strand at 1490.543 kb on - strand at 1490.543 kb on - strand at 1490.545 kb on + strand at 1490.545 kb on + strand at 1490.546 kb on - strand at 1490.546 kb on - strand at 1490.546 kb on - strand at 1490.568 kb on + strand at 1490.569 kb on - strand at 1490.569 kb on - strand at 1490.574 kb on + strand at 1490.575 kb on - strand at 1490.586 kb on + strand at 1490.676 kb on + strand at 1490.676 kb on + strand at 1490.676 kb on + strand at 1490.677 kb on - strand at 1490.677 kb on - strand at 1490.677 kb on - strand at 1490.742 kb on + strand, within yiaU at 1490.968 kb on + strand, within yiaU at 1490.969 kb on - strand, within yiaU at 1491.062 kb on - strand, within yiaU at 1491.099 kb on + strand, within yiaU at 1491.145 kb on - strand, within yiaU at 1491.145 kb on - strand, within yiaU at 1491.155 kb on - strand, within yiaU at 1491.206 kb on - strand, within yiaU at 1491.218 kb on + strand, within yiaU at 1491.219 kb on - strand, within yiaU at 1491.346 kb on - strand, within yiaU at 1491.410 kb on + strand, within yiaU at 1491.473 kb on + strand at 1491.541 kb on + strand at 1491.542 kb on - strand at 1491.577 kb on - strand at 1491.591 kb on - strand at 1491.601 kb on - strand at 1491.605 kb on - strand at 1491.636 kb on + strand at 1491.803 kb on - strand, within yiaT at 1491.811 kb on + strand, within yiaT at 1491.832 kb on + strand, within yiaT at 1491.910 kb on + strand, within yiaT at 1491.997 kb on + strand, within yiaT at 1491.997 kb on + strand, within yiaT at 1491.998 kb on - strand, within yiaT at 1491.998 kb on - strand, within yiaT at 1492.128 kb on + strand, within yiaT at 1492.128 kb on + strand, within yiaT at 1492.129 kb on - strand, within yiaT at 1492.166 kb on + strand, within yiaT at 1492.166 kb on + strand, within yiaT at 1492.166 kb on + strand, within yiaT at 1492.167 kb on - strand, within yiaT at 1492.169 kb on + strand, within yiaT at 1492.169 kb on + strand, within yiaT at 1492.169 kb on + strand, within yiaT at 1492.191 kb on - strand, within yiaT at 1492.191 kb on - strand, within yiaT at 1492.191 kb on - strand, within yiaT at 1492.191 kb on - strand, within yiaT at 1492.193 kb on + strand, within yiaT at 1492.193 kb on + strand, within yiaT at 1492.193 kb on + strand, within yiaT at 1492.194 kb on - strand, within yiaT at 1492.194 kb on - strand, within yiaT at 1492.194 kb on - strand, within yiaT at 1492.194 kb on - strand, within yiaT at 1492.242 kb on - strand, within yiaT at 1492.268 kb on + strand, within yiaT at 1492.268 kb on + strand, within yiaT at 1492.268 kb on + strand, within yiaT at 1492.268 kb on + strand, within yiaT at 1492.269 kb on - strand, within yiaT at 1492.311 kb on + strand, within yiaT at 1492.311 kb on + strand, within yiaT at 1492.312 kb on - strand, within yiaT at 1492.312 kb on - strand, within yiaT at 1492.332 kb on - strand, within yiaT at 1492.379 kb on - strand at 1492.379 kb on - strand at 1492.379 kb on - strand at 1492.390 kb on + strand at 1492.391 kb on - strand at 1492.421 kb on + strand at 1492.454 kb on - strand at 1492.473 kb on + strand at 1492.473 kb on + strand at 1492.474 kb on - strand at 1492.474 kb on - strand at 1492.474 kb on - strand at 1492.474 kb on - strand at 1492.474 kb on - strand at 1492.483 kb on - strand at 1492.483 kb on - strand at 1492.493 kb on - strand at 1492.520 kb on + strand at 1492.520 kb on + strand at 1492.521 kb on - strand at 1492.554 kb on + strand at 1492.555 kb on - strand at 1492.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 1,489,596 + yiaV NOLOHH_07770 0.13 +0.5 1,489,596 + yiaV NOLOHH_07770 0.13 +0.0 1,489,609 - yiaV NOLOHH_07770 0.14 +0.1 1,489,609 - yiaV NOLOHH_07770 0.14 +0.1 1,489,611 - yiaV NOLOHH_07770 0.14 +0.5 1,489,640 + yiaV NOLOHH_07770 0.17 +0.9 1,489,641 - yiaV NOLOHH_07770 0.17 +0.2 1,489,796 + yiaV NOLOHH_07770 0.30 -1.5 1,489,797 - yiaV NOLOHH_07770 0.30 +0.8 1,489,797 - yiaV NOLOHH_07770 0.30 +1.5 1,489,822 + yiaV NOLOHH_07770 0.33 +0.1 1,489,884 + yiaV NOLOHH_07770 0.38 +0.6 1,489,885 - yiaV NOLOHH_07770 0.38 +0.4 1,489,893 + yiaV NOLOHH_07770 0.39 -0.5 1,490,094 + yiaV NOLOHH_07770 0.56 -0.9 1,490,094 + yiaV NOLOHH_07770 0.56 -0.2 1,490,094 + yiaV NOLOHH_07770 0.56 +0.3 1,490,095 - yiaV NOLOHH_07770 0.57 -1.6 1,490,095 - yiaV NOLOHH_07770 0.57 -0.6 1,490,095 - yiaV NOLOHH_07770 0.57 +0.0 1,490,095 - yiaV NOLOHH_07770 0.57 -0.5 1,490,113 + yiaV NOLOHH_07770 0.58 -1.3 1,490,113 + yiaV NOLOHH_07770 0.58 -0.1 1,490,136 + yiaV NOLOHH_07770 0.60 -0.9 1,490,136 + yiaV NOLOHH_07770 0.60 -0.8 1,490,136 + yiaV NOLOHH_07770 0.60 +0.5 1,490,137 - yiaV NOLOHH_07770 0.60 +0.5 1,490,137 - yiaV NOLOHH_07770 0.60 +0.6 1,490,169 + yiaV NOLOHH_07770 0.63 -0.2 1,490,169 + yiaV NOLOHH_07770 0.63 -0.2 1,490,169 + yiaV NOLOHH_07770 0.63 +0.3 1,490,170 - yiaV NOLOHH_07770 0.63 -0.2 1,490,170 - yiaV NOLOHH_07770 0.63 -0.5 1,490,170 - yiaV NOLOHH_07770 0.63 -0.6 1,490,170 - yiaV NOLOHH_07770 0.63 -0.1 1,490,188 + yiaV NOLOHH_07770 0.65 -0.7 1,490,189 - yiaV NOLOHH_07770 0.65 -0.6 1,490,207 + yiaV NOLOHH_07770 0.66 +1.0 1,490,207 + yiaV NOLOHH_07770 0.66 +0.1 1,490,207 + yiaV NOLOHH_07770 0.66 -0.1 1,490,207 + yiaV NOLOHH_07770 0.66 +0.5 1,490,207 + yiaV NOLOHH_07770 0.66 +0.1 1,490,207 + yiaV NOLOHH_07770 0.66 -1.8 1,490,207 + yiaV NOLOHH_07770 0.66 +0.5 1,490,208 - yiaV NOLOHH_07770 0.66 +0.2 1,490,297 + yiaV NOLOHH_07770 0.74 +0.1 1,490,298 - yiaV NOLOHH_07770 0.74 -0.1 1,490,298 - yiaV NOLOHH_07770 0.74 -0.8 1,490,298 - yiaV NOLOHH_07770 0.74 +0.5 1,490,313 - yiaV NOLOHH_07770 0.76 +0.5 1,490,317 + yiaV NOLOHH_07770 0.76 +0.0 1,490,317 + yiaV NOLOHH_07770 0.76 +0.2 1,490,342 + yiaV NOLOHH_07770 0.78 -0.1 1,490,367 + yiaV NOLOHH_07770 0.80 -0.7 1,490,386 + yiaV NOLOHH_07770 0.82 -0.6 1,490,387 - yiaV NOLOHH_07770 0.82 -0.1 1,490,468 - yiaV NOLOHH_07770 0.89 -0.1 1,490,468 - yiaV NOLOHH_07770 0.89 +0.1 1,490,477 + -0.5 1,490,477 + +0.0 1,490,477 + +0.5 1,490,477 + +0.8 1,490,478 - -2.6 1,490,478 - +2.8 1,490,478 - -2.3 1,490,478 - -0.5 1,490,500 - +2.0 1,490,542 + +0.5 1,490,542 + -0.1 1,490,543 - -0.3 1,490,543 - -0.0 1,490,543 - -0.2 1,490,545 + -1.5 1,490,545 + -0.4 1,490,546 - -0.5 1,490,546 - +0.1 1,490,546 - +0.7 1,490,568 + -1.5 1,490,569 - +0.5 1,490,569 - -1.5 1,490,574 + -0.7 1,490,575 - +0.3 1,490,586 + +0.5 1,490,676 + +0.3 1,490,676 + +0.3 1,490,676 + -0.2 1,490,677 - +0.2 1,490,677 - +0.2 1,490,677 - +0.7 1,490,742 + yiaU NOLOHH_07775 0.16 -0.5 1,490,968 + yiaU NOLOHH_07775 0.39 +2.1 1,490,969 - yiaU NOLOHH_07775 0.39 +0.9 1,491,062 - yiaU NOLOHH_07775 0.49 +0.1 1,491,099 + yiaU NOLOHH_07775 0.53 -0.5 1,491,145 - yiaU NOLOHH_07775 0.57 -0.6 1,491,145 - yiaU NOLOHH_07775 0.57 +2.1 1,491,155 - yiaU NOLOHH_07775 0.58 -0.4 1,491,206 - yiaU NOLOHH_07775 0.64 +0.2 1,491,218 + yiaU NOLOHH_07775 0.65 -0.2 1,491,219 - yiaU NOLOHH_07775 0.65 +0.0 1,491,346 - yiaU NOLOHH_07775 0.78 -1.1 1,491,410 + yiaU NOLOHH_07775 0.85 +0.5 1,491,473 + +0.2 1,491,541 + -0.2 1,491,542 - -0.7 1,491,577 - +0.9 1,491,591 - -0.9 1,491,601 - +0.7 1,491,605 - +0.3 1,491,636 + +0.8 1,491,803 - yiaT NOLOHH_07780 0.16 -0.2 1,491,811 + yiaT NOLOHH_07780 0.17 -0.5 1,491,832 + yiaT NOLOHH_07780 0.20 -0.5 1,491,910 + yiaT NOLOHH_07780 0.31 +0.2 1,491,997 + yiaT NOLOHH_07780 0.42 +0.4 1,491,997 + yiaT NOLOHH_07780 0.42 +0.5 1,491,998 - yiaT NOLOHH_07780 0.43 -0.7 1,491,998 - yiaT NOLOHH_07780 0.43 +2.5 1,492,128 + yiaT NOLOHH_07780 0.60 -0.3 1,492,128 + yiaT NOLOHH_07780 0.60 +0.2 1,492,129 - yiaT NOLOHH_07780 0.60 +0.8 1,492,166 + yiaT NOLOHH_07780 0.65 -0.9 1,492,166 + yiaT NOLOHH_07780 0.65 +0.2 1,492,166 + yiaT NOLOHH_07780 0.65 +0.0 1,492,167 - yiaT NOLOHH_07780 0.65 -0.3 1,492,169 + yiaT NOLOHH_07780 0.66 +0.7 1,492,169 + yiaT NOLOHH_07780 0.66 +0.3 1,492,169 + yiaT NOLOHH_07780 0.66 +0.7 1,492,191 - yiaT NOLOHH_07780 0.69 -0.5 1,492,191 - yiaT NOLOHH_07780 0.69 +0.2 1,492,191 - yiaT NOLOHH_07780 0.69 -0.5 1,492,191 - yiaT NOLOHH_07780 0.69 +0.7 1,492,193 + yiaT NOLOHH_07780 0.69 +0.1 1,492,193 + yiaT NOLOHH_07780 0.69 -0.6 1,492,193 + yiaT NOLOHH_07780 0.69 -0.9 1,492,194 - yiaT NOLOHH_07780 0.69 -0.1 1,492,194 - yiaT NOLOHH_07780 0.69 -0.8 1,492,194 - yiaT NOLOHH_07780 0.69 -1.0 1,492,194 - yiaT NOLOHH_07780 0.69 -0.2 1,492,242 - yiaT NOLOHH_07780 0.75 +0.1 1,492,268 + yiaT NOLOHH_07780 0.79 +0.9 1,492,268 + yiaT NOLOHH_07780 0.79 -1.5 1,492,268 + yiaT NOLOHH_07780 0.79 +0.0 1,492,268 + yiaT NOLOHH_07780 0.79 -0.5 1,492,269 - yiaT NOLOHH_07780 0.79 +0.5 1,492,311 + yiaT NOLOHH_07780 0.85 +2.7 1,492,311 + yiaT NOLOHH_07780 0.85 -0.9 1,492,312 - yiaT NOLOHH_07780 0.85 +0.6 1,492,312 - yiaT NOLOHH_07780 0.85 +0.5 1,492,332 - yiaT NOLOHH_07780 0.88 -0.6 1,492,379 - -0.1 1,492,379 - -0.5 1,492,379 - +0.6 1,492,390 + -0.3 1,492,391 - +0.2 1,492,421 + -0.1 1,492,454 - -0.4 1,492,473 + +0.3 1,492,473 + +0.5 1,492,474 - -0.5 1,492,474 - +0.5 1,492,474 - -0.1 1,492,474 - +0.4 1,492,474 - +1.1 1,492,483 - -0.4 1,492,483 - -0.9 1,492,493 - +0.5 1,492,520 + -0.7 1,492,520 + -1.8 1,492,521 - +0.1 1,492,554 + -0.3 1,492,555 - +0.1 1,492,555 - +0.4
Or see this region's nucleotide sequence