Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07775

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyiaV and yiaU overlap by 4 nucleotidesyiaU and yiaT are separated by 123 nucleotidesyiaT and hybA1 are separated by 129 nucleotides NOLOHH_07770: yiaV - Inner membrane protein YiaV, at 1,489,452 to 1,490,588 yiaV NOLOHH_07775: yiaU - Uncharacterized HTH-type transcriptional regulator YiaU, at 1,490,585 to 1,491,559 yiaU NOLOHH_07780: yiaT - Putative outer membrane protein YiaT, at 1,491,683 to 1,492,423 yiaT NOLOHH_07785: hybA1 - Non-reducing end beta-L-arabinofuranosidase, at 1,492,553 to 1,494,523 hybA1 Position (kb) 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1489.596 kb on + strand, within yiaVat 1489.596 kb on + strand, within yiaVat 1489.609 kb on - strand, within yiaVat 1489.609 kb on - strand, within yiaVat 1489.611 kb on - strand, within yiaVat 1489.640 kb on + strand, within yiaVat 1489.641 kb on - strand, within yiaVat 1489.796 kb on + strand, within yiaVat 1489.797 kb on - strand, within yiaVat 1489.797 kb on - strand, within yiaVat 1489.822 kb on + strand, within yiaVat 1489.884 kb on + strand, within yiaVat 1489.885 kb on - strand, within yiaVat 1489.893 kb on + strand, within yiaVat 1490.094 kb on + strand, within yiaVat 1490.094 kb on + strand, within yiaVat 1490.094 kb on + strand, within yiaVat 1490.095 kb on - strand, within yiaVat 1490.095 kb on - strand, within yiaVat 1490.095 kb on - strand, within yiaVat 1490.095 kb on - strand, within yiaVat 1490.113 kb on + strand, within yiaVat 1490.113 kb on + strand, within yiaVat 1490.136 kb on + strand, within yiaVat 1490.136 kb on + strand, within yiaVat 1490.136 kb on + strand, within yiaVat 1490.137 kb on - strand, within yiaVat 1490.137 kb on - strand, within yiaVat 1490.169 kb on + strand, within yiaVat 1490.169 kb on + strand, within yiaVat 1490.169 kb on + strand, within yiaVat 1490.170 kb on - strand, within yiaVat 1490.170 kb on - strand, within yiaVat 1490.170 kb on - strand, within yiaVat 1490.170 kb on - strand, within yiaVat 1490.188 kb on + strand, within yiaVat 1490.189 kb on - strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.207 kb on + strand, within yiaVat 1490.208 kb on - strand, within yiaVat 1490.297 kb on + strand, within yiaVat 1490.298 kb on - strand, within yiaVat 1490.298 kb on - strand, within yiaVat 1490.298 kb on - strand, within yiaVat 1490.313 kb on - strand, within yiaVat 1490.317 kb on + strand, within yiaVat 1490.317 kb on + strand, within yiaVat 1490.342 kb on + strand, within yiaVat 1490.367 kb on + strand, within yiaVat 1490.386 kb on + strand, within yiaVat 1490.387 kb on - strand, within yiaVat 1490.468 kb on - strand, within yiaVat 1490.468 kb on - strand, within yiaVat 1490.477 kb on + strandat 1490.477 kb on + strandat 1490.477 kb on + strandat 1490.477 kb on + strandat 1490.478 kb on - strandat 1490.478 kb on - strandat 1490.478 kb on - strandat 1490.478 kb on - strandat 1490.500 kb on - strandat 1490.542 kb on + strandat 1490.542 kb on + strandat 1490.543 kb on - strandat 1490.543 kb on - strandat 1490.543 kb on - strandat 1490.545 kb on + strandat 1490.545 kb on + strandat 1490.546 kb on - strandat 1490.546 kb on - strandat 1490.546 kb on - strandat 1490.568 kb on + strandat 1490.569 kb on - strandat 1490.569 kb on - strandat 1490.574 kb on + strandat 1490.575 kb on - strandat 1490.586 kb on + strandat 1490.676 kb on + strandat 1490.676 kb on + strandat 1490.676 kb on + strandat 1490.677 kb on - strandat 1490.677 kb on - strandat 1490.677 kb on - strandat 1490.742 kb on + strand, within yiaUat 1490.968 kb on + strand, within yiaUat 1490.969 kb on - strand, within yiaUat 1491.062 kb on - strand, within yiaUat 1491.099 kb on + strand, within yiaUat 1491.145 kb on - strand, within yiaUat 1491.145 kb on - strand, within yiaUat 1491.155 kb on - strand, within yiaUat 1491.206 kb on - strand, within yiaUat 1491.218 kb on + strand, within yiaUat 1491.219 kb on - strand, within yiaUat 1491.346 kb on - strand, within yiaUat 1491.410 kb on + strand, within yiaUat 1491.473 kb on + strandat 1491.541 kb on + strandat 1491.542 kb on - strandat 1491.577 kb on - strandat 1491.591 kb on - strandat 1491.601 kb on - strandat 1491.605 kb on - strandat 1491.636 kb on + strandat 1491.803 kb on - strand, within yiaTat 1491.811 kb on + strand, within yiaTat 1491.832 kb on + strand, within yiaTat 1491.910 kb on + strand, within yiaTat 1491.997 kb on + strand, within yiaTat 1491.997 kb on + strand, within yiaTat 1491.998 kb on - strand, within yiaTat 1491.998 kb on - strand, within yiaTat 1492.128 kb on + strand, within yiaTat 1492.128 kb on + strand, within yiaTat 1492.129 kb on - strand, within yiaTat 1492.166 kb on + strand, within yiaTat 1492.166 kb on + strand, within yiaTat 1492.166 kb on + strand, within yiaTat 1492.167 kb on - strand, within yiaTat 1492.169 kb on + strand, within yiaTat 1492.169 kb on + strand, within yiaTat 1492.169 kb on + strand, within yiaTat 1492.191 kb on - strand, within yiaTat 1492.191 kb on - strand, within yiaTat 1492.191 kb on - strand, within yiaTat 1492.191 kb on - strand, within yiaTat 1492.193 kb on + strand, within yiaTat 1492.193 kb on + strand, within yiaTat 1492.193 kb on + strand, within yiaTat 1492.194 kb on - strand, within yiaTat 1492.194 kb on - strand, within yiaTat 1492.194 kb on - strand, within yiaTat 1492.194 kb on - strand, within yiaTat 1492.242 kb on - strand, within yiaTat 1492.268 kb on + strand, within yiaTat 1492.268 kb on + strand, within yiaTat 1492.268 kb on + strand, within yiaTat 1492.268 kb on + strand, within yiaTat 1492.269 kb on - strand, within yiaTat 1492.311 kb on + strand, within yiaTat 1492.311 kb on + strand, within yiaTat 1492.312 kb on - strand, within yiaTat 1492.312 kb on - strand, within yiaTat 1492.332 kb on - strand, within yiaTat 1492.379 kb on - strandat 1492.379 kb on - strandat 1492.379 kb on - strandat 1492.390 kb on + strandat 1492.391 kb on - strandat 1492.421 kb on + strandat 1492.454 kb on - strandat 1492.473 kb on + strandat 1492.473 kb on + strandat 1492.474 kb on - strandat 1492.474 kb on - strandat 1492.474 kb on - strandat 1492.474 kb on - strandat 1492.474 kb on - strandat 1492.483 kb on - strandat 1492.483 kb on - strandat 1492.493 kb on - strandat 1492.520 kb on + strandat 1492.520 kb on + strandat 1492.521 kb on - strandat 1492.554 kb on + strandat 1492.555 kb on - strandat 1492.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,489,596 + yiaV NOLOHH_07770 0.13 +0.5
1,489,596 + yiaV NOLOHH_07770 0.13 +0.0
1,489,609 - yiaV NOLOHH_07770 0.14 +0.1
1,489,609 - yiaV NOLOHH_07770 0.14 +0.1
1,489,611 - yiaV NOLOHH_07770 0.14 +0.5
1,489,640 + yiaV NOLOHH_07770 0.17 +0.9
1,489,641 - yiaV NOLOHH_07770 0.17 +0.2
1,489,796 + yiaV NOLOHH_07770 0.30 -1.5
1,489,797 - yiaV NOLOHH_07770 0.30 +0.8
1,489,797 - yiaV NOLOHH_07770 0.30 +1.5
1,489,822 + yiaV NOLOHH_07770 0.33 +0.1
1,489,884 + yiaV NOLOHH_07770 0.38 +0.6
1,489,885 - yiaV NOLOHH_07770 0.38 +0.4
1,489,893 + yiaV NOLOHH_07770 0.39 -0.5
1,490,094 + yiaV NOLOHH_07770 0.56 -0.9
1,490,094 + yiaV NOLOHH_07770 0.56 -0.2
1,490,094 + yiaV NOLOHH_07770 0.56 +0.3
1,490,095 - yiaV NOLOHH_07770 0.57 -1.6
1,490,095 - yiaV NOLOHH_07770 0.57 -0.6
1,490,095 - yiaV NOLOHH_07770 0.57 +0.0
1,490,095 - yiaV NOLOHH_07770 0.57 -0.5
1,490,113 + yiaV NOLOHH_07770 0.58 -1.3
1,490,113 + yiaV NOLOHH_07770 0.58 -0.1
1,490,136 + yiaV NOLOHH_07770 0.60 -0.9
1,490,136 + yiaV NOLOHH_07770 0.60 -0.8
1,490,136 + yiaV NOLOHH_07770 0.60 +0.5
1,490,137 - yiaV NOLOHH_07770 0.60 +0.5
1,490,137 - yiaV NOLOHH_07770 0.60 +0.6
1,490,169 + yiaV NOLOHH_07770 0.63 -0.2
1,490,169 + yiaV NOLOHH_07770 0.63 -0.2
1,490,169 + yiaV NOLOHH_07770 0.63 +0.3
1,490,170 - yiaV NOLOHH_07770 0.63 -0.2
1,490,170 - yiaV NOLOHH_07770 0.63 -0.5
1,490,170 - yiaV NOLOHH_07770 0.63 -0.6
1,490,170 - yiaV NOLOHH_07770 0.63 -0.1
1,490,188 + yiaV NOLOHH_07770 0.65 -0.7
1,490,189 - yiaV NOLOHH_07770 0.65 -0.6
1,490,207 + yiaV NOLOHH_07770 0.66 +1.0
1,490,207 + yiaV NOLOHH_07770 0.66 +0.1
1,490,207 + yiaV NOLOHH_07770 0.66 -0.1
1,490,207 + yiaV NOLOHH_07770 0.66 +0.5
1,490,207 + yiaV NOLOHH_07770 0.66 +0.1
1,490,207 + yiaV NOLOHH_07770 0.66 -1.8
1,490,207 + yiaV NOLOHH_07770 0.66 +0.5
1,490,208 - yiaV NOLOHH_07770 0.66 +0.2
1,490,297 + yiaV NOLOHH_07770 0.74 +0.1
1,490,298 - yiaV NOLOHH_07770 0.74 -0.1
1,490,298 - yiaV NOLOHH_07770 0.74 -0.8
1,490,298 - yiaV NOLOHH_07770 0.74 +0.5
1,490,313 - yiaV NOLOHH_07770 0.76 +0.5
1,490,317 + yiaV NOLOHH_07770 0.76 +0.0
1,490,317 + yiaV NOLOHH_07770 0.76 +0.2
1,490,342 + yiaV NOLOHH_07770 0.78 -0.1
1,490,367 + yiaV NOLOHH_07770 0.80 -0.7
1,490,386 + yiaV NOLOHH_07770 0.82 -0.6
1,490,387 - yiaV NOLOHH_07770 0.82 -0.1
1,490,468 - yiaV NOLOHH_07770 0.89 -0.1
1,490,468 - yiaV NOLOHH_07770 0.89 +0.1
1,490,477 + -0.5
1,490,477 + +0.0
1,490,477 + +0.5
1,490,477 + +0.8
1,490,478 - -2.6
1,490,478 - +2.8
1,490,478 - -2.3
1,490,478 - -0.5
1,490,500 - +2.0
1,490,542 + +0.5
1,490,542 + -0.1
1,490,543 - -0.3
1,490,543 - -0.0
1,490,543 - -0.2
1,490,545 + -1.5
1,490,545 + -0.4
1,490,546 - -0.5
1,490,546 - +0.1
1,490,546 - +0.7
1,490,568 + -1.5
1,490,569 - +0.5
1,490,569 - -1.5
1,490,574 + -0.7
1,490,575 - +0.3
1,490,586 + +0.5
1,490,676 + +0.3
1,490,676 + +0.3
1,490,676 + -0.2
1,490,677 - +0.2
1,490,677 - +0.2
1,490,677 - +0.7
1,490,742 + yiaU NOLOHH_07775 0.16 -0.5
1,490,968 + yiaU NOLOHH_07775 0.39 +2.1
1,490,969 - yiaU NOLOHH_07775 0.39 +0.9
1,491,062 - yiaU NOLOHH_07775 0.49 +0.1
1,491,099 + yiaU NOLOHH_07775 0.53 -0.5
1,491,145 - yiaU NOLOHH_07775 0.57 -0.6
1,491,145 - yiaU NOLOHH_07775 0.57 +2.1
1,491,155 - yiaU NOLOHH_07775 0.58 -0.4
1,491,206 - yiaU NOLOHH_07775 0.64 +0.2
1,491,218 + yiaU NOLOHH_07775 0.65 -0.2
1,491,219 - yiaU NOLOHH_07775 0.65 +0.0
1,491,346 - yiaU NOLOHH_07775 0.78 -1.1
1,491,410 + yiaU NOLOHH_07775 0.85 +0.5
1,491,473 + +0.2
1,491,541 + -0.2
1,491,542 - -0.7
1,491,577 - +0.9
1,491,591 - -0.9
1,491,601 - +0.7
1,491,605 - +0.3
1,491,636 + +0.8
1,491,803 - yiaT NOLOHH_07780 0.16 -0.2
1,491,811 + yiaT NOLOHH_07780 0.17 -0.5
1,491,832 + yiaT NOLOHH_07780 0.20 -0.5
1,491,910 + yiaT NOLOHH_07780 0.31 +0.2
1,491,997 + yiaT NOLOHH_07780 0.42 +0.4
1,491,997 + yiaT NOLOHH_07780 0.42 +0.5
1,491,998 - yiaT NOLOHH_07780 0.43 -0.7
1,491,998 - yiaT NOLOHH_07780 0.43 +2.5
1,492,128 + yiaT NOLOHH_07780 0.60 -0.3
1,492,128 + yiaT NOLOHH_07780 0.60 +0.2
1,492,129 - yiaT NOLOHH_07780 0.60 +0.8
1,492,166 + yiaT NOLOHH_07780 0.65 -0.9
1,492,166 + yiaT NOLOHH_07780 0.65 +0.2
1,492,166 + yiaT NOLOHH_07780 0.65 +0.0
1,492,167 - yiaT NOLOHH_07780 0.65 -0.3
1,492,169 + yiaT NOLOHH_07780 0.66 +0.7
1,492,169 + yiaT NOLOHH_07780 0.66 +0.3
1,492,169 + yiaT NOLOHH_07780 0.66 +0.7
1,492,191 - yiaT NOLOHH_07780 0.69 -0.5
1,492,191 - yiaT NOLOHH_07780 0.69 +0.2
1,492,191 - yiaT NOLOHH_07780 0.69 -0.5
1,492,191 - yiaT NOLOHH_07780 0.69 +0.7
1,492,193 + yiaT NOLOHH_07780 0.69 +0.1
1,492,193 + yiaT NOLOHH_07780 0.69 -0.6
1,492,193 + yiaT NOLOHH_07780 0.69 -0.9
1,492,194 - yiaT NOLOHH_07780 0.69 -0.1
1,492,194 - yiaT NOLOHH_07780 0.69 -0.8
1,492,194 - yiaT NOLOHH_07780 0.69 -1.0
1,492,194 - yiaT NOLOHH_07780 0.69 -0.2
1,492,242 - yiaT NOLOHH_07780 0.75 +0.1
1,492,268 + yiaT NOLOHH_07780 0.79 +0.9
1,492,268 + yiaT NOLOHH_07780 0.79 -1.5
1,492,268 + yiaT NOLOHH_07780 0.79 +0.0
1,492,268 + yiaT NOLOHH_07780 0.79 -0.5
1,492,269 - yiaT NOLOHH_07780 0.79 +0.5
1,492,311 + yiaT NOLOHH_07780 0.85 +2.7
1,492,311 + yiaT NOLOHH_07780 0.85 -0.9
1,492,312 - yiaT NOLOHH_07780 0.85 +0.6
1,492,312 - yiaT NOLOHH_07780 0.85 +0.5
1,492,332 - yiaT NOLOHH_07780 0.88 -0.6
1,492,379 - -0.1
1,492,379 - -0.5
1,492,379 - +0.6
1,492,390 + -0.3
1,492,391 - +0.2
1,492,421 + -0.1
1,492,454 - -0.4
1,492,473 + +0.3
1,492,473 + +0.5
1,492,474 - -0.5
1,492,474 - +0.5
1,492,474 - -0.1
1,492,474 - +0.4
1,492,474 - +1.1
1,492,483 - -0.4
1,492,483 - -0.9
1,492,493 - +0.5
1,492,520 + -0.7
1,492,520 + -1.8
1,492,521 - +0.1
1,492,554 + -0.3
1,492,555 - +0.1
1,492,555 - +0.4

Or see this region's nucleotide sequence