Strain Fitness in Escherichia coli ECOR27 around NOLOHH_06915

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnA and asnC are separated by 151 nucleotidesasnC and mioC are separated by 89 nucleotidesmioC and mnmG are separated by 377 nucleotides NOLOHH_06905: asnA - aspartate--ammonia ligase, at 1,306,477 to 1,307,469 asnA NOLOHH_06910: asnC - transcriptional regulator AsnC, at 1,307,621 to 1,308,079 asnC NOLOHH_06915: mioC - FMN-binding protein MioC, at 1,308,169 to 1,308,612 mioC NOLOHH_06920: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,308,990 to 1,310,879 mnmG Position (kb) 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1307.192 kb on + strand, within asnAat 1307.192 kb on + strand, within asnAat 1307.192 kb on + strand, within asnAat 1307.192 kb on + strand, within asnAat 1307.227 kb on + strand, within asnAat 1307.299 kb on + strand, within asnAat 1307.331 kb on + strand, within asnAat 1307.433 kb on + strandat 1307.433 kb on + strandat 1307.433 kb on + strandat 1307.433 kb on + strandat 1307.434 kb on - strandat 1307.434 kb on - strandat 1307.434 kb on - strandat 1307.434 kb on - strandat 1307.434 kb on - strandat 1307.434 kb on - strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.456 kb on + strandat 1307.457 kb on - strandat 1307.457 kb on - strandat 1307.457 kb on - strandat 1307.457 kb on - strandat 1307.496 kb on + strandat 1307.670 kb on + strand, within asnCat 1307.789 kb on - strand, within asnCat 1307.816 kb on + strand, within asnCat 1307.817 kb on - strand, within asnCat 1307.823 kb on + strand, within asnCat 1307.823 kb on + strand, within asnCat 1307.823 kb on + strand, within asnCat 1307.833 kb on + strand, within asnCat 1307.842 kb on + strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.843 kb on - strand, within asnCat 1307.844 kb on + strand, within asnCat 1307.844 kb on + strand, within asnCat 1307.844 kb on + strand, within asnCat 1307.845 kb on - strand, within asnCat 1307.845 kb on - strand, within asnCat 1307.847 kb on + strand, within asnCat 1307.847 kb on + strand, within asnCat 1307.848 kb on - strand, within asnCat 1307.865 kb on - strand, within asnCat 1307.915 kb on + strand, within asnCat 1307.915 kb on + strand, within asnCat 1307.916 kb on - strand, within asnCat 1307.916 kb on - strand, within asnCat 1307.918 kb on + strand, within asnCat 1307.918 kb on + strand, within asnCat 1307.918 kb on + strand, within asnCat 1307.919 kb on - strand, within asnCat 1307.919 kb on - strand, within asnCat 1307.919 kb on - strand, within asnCat 1307.933 kb on + strand, within asnCat 1307.944 kb on + strand, within asnCat 1307.944 kb on + strand, within asnCat 1307.945 kb on - strand, within asnCat 1307.945 kb on - strand, within asnCat 1307.946 kb on + strand, within asnCat 1307.947 kb on - strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.985 kb on + strand, within asnCat 1307.986 kb on - strand, within asnCat 1307.989 kb on + strand, within asnCat 1307.989 kb on + strand, within asnCat 1307.989 kb on + strand, within asnCat 1307.990 kb on - strand, within asnCat 1307.990 kb on - strand, within asnCat 1307.990 kb on - strand, within asnCat 1308.035 kb on + strandat 1308.065 kb on - strandat 1308.078 kb on - strandat 1308.090 kb on + strandat 1308.112 kb on + strandat 1308.112 kb on + strandat 1308.113 kb on - strandat 1308.113 kb on - strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.135 kb on + strandat 1308.136 kb on - strandat 1308.136 kb on - strandat 1308.136 kb on - strandat 1308.136 kb on - strandat 1308.136 kb on - strandat 1308.136 kb on - strandat 1308.151 kb on + strandat 1308.151 kb on + strandat 1308.152 kb on - strandat 1308.154 kb on + strandat 1308.154 kb on + strandat 1308.155 kb on - strandat 1308.168 kb on + strandat 1308.169 kb on - strandat 1308.177 kb on + strandat 1308.177 kb on + strandat 1308.181 kb on - strandat 1308.187 kb on - strandat 1308.217 kb on + strand, within mioCat 1308.217 kb on + strand, within mioCat 1308.217 kb on + strand, within mioCat 1308.218 kb on - strand, within mioCat 1308.218 kb on - strand, within mioCat 1308.218 kb on - strand, within mioCat 1308.221 kb on + strand, within mioCat 1308.221 kb on + strand, within mioCat 1308.222 kb on - strand, within mioCat 1308.222 kb on - strand, within mioCat 1308.222 kb on - strand, within mioCat 1308.261 kb on + strand, within mioCat 1308.299 kb on + strand, within mioCat 1308.299 kb on + strand, within mioCat 1308.299 kb on + strand, within mioCat 1308.324 kb on + strand, within mioCat 1308.351 kb on + strand, within mioCat 1308.352 kb on - strand, within mioCat 1308.376 kb on + strand, within mioCat 1308.377 kb on - strand, within mioCat 1308.440 kb on + strand, within mioCat 1308.442 kb on - strand, within mioCat 1308.451 kb on + strand, within mioCat 1308.452 kb on - strand, within mioCat 1308.477 kb on + strand, within mioCat 1308.610 kb on + strandat 1308.610 kb on + strandat 1308.610 kb on + strandat 1308.611 kb on - strandat 1308.611 kb on - strandat 1308.611 kb on - strandat 1308.874 kb on + strandat 1308.887 kb on + strandat 1308.888 kb on - strandat 1308.965 kb on + strandat 1308.965 kb on + strandat 1309.103 kb on + strandat 1309.240 kb on + strand, within mnmGat 1309.316 kb on + strand, within mnmGat 1309.316 kb on + strand, within mnmGat 1309.497 kb on + strand, within mnmG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,307,192 + asnA NOLOHH_06905 0.72 +0.3
1,307,192 + asnA NOLOHH_06905 0.72 +0.3
1,307,192 + asnA NOLOHH_06905 0.72 +1.3
1,307,192 + asnA NOLOHH_06905 0.72 -1.7
1,307,227 + asnA NOLOHH_06905 0.76 +1.0
1,307,299 + asnA NOLOHH_06905 0.83 +0.4
1,307,331 + asnA NOLOHH_06905 0.86 +0.9
1,307,433 + -0.4
1,307,433 + +0.7
1,307,433 + -0.8
1,307,433 + -0.7
1,307,434 - -0.4
1,307,434 - +0.6
1,307,434 - -0.2
1,307,434 - +0.6
1,307,434 - +0.4
1,307,434 - -0.0
1,307,456 + +0.6
1,307,456 + -0.6
1,307,456 + -0.1
1,307,456 + +0.6
1,307,456 + +0.0
1,307,456 + +0.6
1,307,456 + +1.3
1,307,456 + -0.8
1,307,457 - -0.5
1,307,457 - -0.8
1,307,457 - -1.0
1,307,457 - -0.1
1,307,496 + +0.4
1,307,670 + asnC NOLOHH_06910 0.11 -1.3
1,307,789 - asnC NOLOHH_06910 0.37 -0.2
1,307,816 + asnC NOLOHH_06910 0.42 +1.1
1,307,817 - asnC NOLOHH_06910 0.43 -0.3
1,307,823 + asnC NOLOHH_06910 0.44 +1.6
1,307,823 + asnC NOLOHH_06910 0.44 +1.0
1,307,823 + asnC NOLOHH_06910 0.44 +0.1
1,307,833 + asnC NOLOHH_06910 0.46 +0.1
1,307,842 + asnC NOLOHH_06910 0.48 -2.2
1,307,843 - asnC NOLOHH_06910 0.48 -1.7
1,307,843 - asnC NOLOHH_06910 0.48 -0.6
1,307,843 - asnC NOLOHH_06910 0.48 -0.4
1,307,843 - asnC NOLOHH_06910 0.48 +0.2
1,307,843 - asnC NOLOHH_06910 0.48 -1.6
1,307,843 - asnC NOLOHH_06910 0.48 +0.2
1,307,844 + asnC NOLOHH_06910 0.49 -0.2
1,307,844 + asnC NOLOHH_06910 0.49 +0.2
1,307,844 + asnC NOLOHH_06910 0.49 -0.4
1,307,845 - asnC NOLOHH_06910 0.49 -0.7
1,307,845 - asnC NOLOHH_06910 0.49 +0.1
1,307,847 + asnC NOLOHH_06910 0.49 +0.1
1,307,847 + asnC NOLOHH_06910 0.49 +0.4
1,307,848 - asnC NOLOHH_06910 0.49 -1.0
1,307,865 - asnC NOLOHH_06910 0.53 -0.7
1,307,915 + asnC NOLOHH_06910 0.64 +1.3
1,307,915 + asnC NOLOHH_06910 0.64 -0.4
1,307,916 - asnC NOLOHH_06910 0.64 -1.2
1,307,916 - asnC NOLOHH_06910 0.64 +1.3
1,307,918 + asnC NOLOHH_06910 0.65 +1.6
1,307,918 + asnC NOLOHH_06910 0.65 +0.5
1,307,918 + asnC NOLOHH_06910 0.65 -1.2
1,307,919 - asnC NOLOHH_06910 0.65 +0.7
1,307,919 - asnC NOLOHH_06910 0.65 +0.6
1,307,919 - asnC NOLOHH_06910 0.65 -2.7
1,307,933 + asnC NOLOHH_06910 0.68 +0.0
1,307,944 + asnC NOLOHH_06910 0.70 -0.6
1,307,944 + asnC NOLOHH_06910 0.70 +0.2
1,307,945 - asnC NOLOHH_06910 0.71 -0.6
1,307,945 - asnC NOLOHH_06910 0.71 +1.2
1,307,946 + asnC NOLOHH_06910 0.71 -0.4
1,307,947 - asnC NOLOHH_06910 0.71 -0.8
1,307,985 + asnC NOLOHH_06910 0.79 -0.1
1,307,985 + asnC NOLOHH_06910 0.79 -1.2
1,307,985 + asnC NOLOHH_06910 0.79 -0.2
1,307,985 + asnC NOLOHH_06910 0.79 -0.7
1,307,985 + asnC NOLOHH_06910 0.79 +1.7
1,307,985 + asnC NOLOHH_06910 0.79 -0.4
1,307,985 + asnC NOLOHH_06910 0.79 -0.0
1,307,986 - asnC NOLOHH_06910 0.80 -1.2
1,307,989 + asnC NOLOHH_06910 0.80 -1.6
1,307,989 + asnC NOLOHH_06910 0.80 -0.2
1,307,989 + asnC NOLOHH_06910 0.80 -0.1
1,307,990 - asnC NOLOHH_06910 0.80 +1.4
1,307,990 - asnC NOLOHH_06910 0.80 +0.6
1,307,990 - asnC NOLOHH_06910 0.80 -1.4
1,308,035 + -0.6
1,308,065 - -1.2
1,308,078 - -0.3
1,308,090 + -0.3
1,308,112 + -1.5
1,308,112 + -0.5
1,308,113 - -0.1
1,308,113 - +0.3
1,308,135 + -0.7
1,308,135 + +0.2
1,308,135 + +0.5
1,308,135 + -1.2
1,308,135 + +0.9
1,308,135 + -1.0
1,308,135 + +0.4
1,308,136 - +0.3
1,308,136 - -0.4
1,308,136 - -0.9
1,308,136 - +0.9
1,308,136 - +0.2
1,308,136 - -0.4
1,308,151 + -0.4
1,308,151 + +0.6
1,308,152 - +0.2
1,308,154 + +0.6
1,308,154 + -0.2
1,308,155 - -0.3
1,308,168 + +1.1
1,308,169 - -1.3
1,308,177 + +0.4
1,308,177 + -0.8
1,308,181 - -1.4
1,308,187 - -0.1
1,308,217 + mioC NOLOHH_06915 0.11 -0.3
1,308,217 + mioC NOLOHH_06915 0.11 -0.6
1,308,217 + mioC NOLOHH_06915 0.11 -0.8
1,308,218 - mioC NOLOHH_06915 0.11 -0.7
1,308,218 - mioC NOLOHH_06915 0.11 -0.8
1,308,218 - mioC NOLOHH_06915 0.11 -0.4
1,308,221 + mioC NOLOHH_06915 0.12 +0.6
1,308,221 + mioC NOLOHH_06915 0.12 -1.4
1,308,222 - mioC NOLOHH_06915 0.12 -1.4
1,308,222 - mioC NOLOHH_06915 0.12 +0.6
1,308,222 - mioC NOLOHH_06915 0.12 +0.3
1,308,261 + mioC NOLOHH_06915 0.21 +0.0
1,308,299 + mioC NOLOHH_06915 0.29 -0.1
1,308,299 + mioC NOLOHH_06915 0.29 +0.1
1,308,299 + mioC NOLOHH_06915 0.29 +1.0
1,308,324 + mioC NOLOHH_06915 0.35 +0.1
1,308,351 + mioC NOLOHH_06915 0.41 -1.0
1,308,352 - mioC NOLOHH_06915 0.41 +0.6
1,308,376 + mioC NOLOHH_06915 0.47 -0.1
1,308,377 - mioC NOLOHH_06915 0.47 -1.4
1,308,440 + mioC NOLOHH_06915 0.61 +0.6
1,308,442 - mioC NOLOHH_06915 0.61 -0.2
1,308,451 + mioC NOLOHH_06915 0.64 +0.6
1,308,452 - mioC NOLOHH_06915 0.64 +1.0
1,308,477 + mioC NOLOHH_06915 0.69 +0.6
1,308,610 + -0.3
1,308,610 + -1.3
1,308,610 + -0.6
1,308,611 - -0.8
1,308,611 - -0.1
1,308,611 - -0.0
1,308,874 + +0.6
1,308,887 + +0.2
1,308,888 - -1.0
1,308,965 + +0.3
1,308,965 + -0.3
1,309,103 + -1.0
1,309,240 + mnmG NOLOHH_06920 0.13 -0.4
1,309,316 + mnmG NOLOHH_06920 0.17 -0.4
1,309,316 + mnmG NOLOHH_06920 0.17 +0.6
1,309,497 + mnmG NOLOHH_06920 0.27 +0.6

Or see this region's nucleotide sequence