Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhlB and gppA are separated by 133 nucleotides gppA and rep are separated by 46 nucleotides
NOLOHH_06735: rhlB - ATP-dependent RNA helicase RhlB, at 1,268,994 to 1,270,259
rhlB
NOLOHH_06740: gppA - guanosine-5'-triphosphate,3'-diphosphate diphosphatase, at 1,270,393 to 1,271,877
gppA
NOLOHH_06745: rep - DNA helicase Rep, at 1,271,924 to 1,273,945
rep
Position (kb)
1270
1271
1272 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1269.427 kb on + strand, within rhlB at 1269.427 kb on + strand, within rhlB at 1269.428 kb on - strand, within rhlB at 1269.428 kb on - strand, within rhlB at 1269.435 kb on + strand, within rhlB at 1269.436 kb on - strand, within rhlB at 1269.436 kb on - strand, within rhlB at 1269.476 kb on - strand, within rhlB at 1269.504 kb on + strand, within rhlB at 1269.505 kb on - strand, within rhlB at 1269.518 kb on + strand, within rhlB at 1269.521 kb on + strand, within rhlB at 1269.521 kb on + strand, within rhlB at 1269.522 kb on - strand, within rhlB at 1269.522 kb on - strand, within rhlB at 1269.528 kb on - strand, within rhlB at 1269.645 kb on + strand, within rhlB at 1269.646 kb on - strand, within rhlB at 1269.647 kb on + strand, within rhlB at 1269.647 kb on + strand, within rhlB at 1269.647 kb on + strand, within rhlB at 1269.647 kb on + strand, within rhlB at 1269.648 kb on - strand, within rhlB at 1269.684 kb on - strand, within rhlB at 1269.686 kb on + strand, within rhlB at 1269.687 kb on - strand, within rhlB at 1269.687 kb on - strand, within rhlB at 1269.687 kb on - strand, within rhlB at 1269.710 kb on + strand, within rhlB at 1269.710 kb on + strand, within rhlB at 1269.773 kb on + strand, within rhlB at 1269.884 kb on + strand, within rhlB at 1269.884 kb on + strand, within rhlB at 1269.956 kb on + strand, within rhlB at 1269.957 kb on - strand, within rhlB at 1269.980 kb on + strand, within rhlB at 1269.980 kb on + strand, within rhlB at 1269.981 kb on - strand, within rhlB at 1269.984 kb on + strand, within rhlB at 1269.984 kb on + strand, within rhlB at 1269.984 kb on + strand, within rhlB at 1269.985 kb on - strand, within rhlB at 1270.011 kb on + strand, within rhlB at 1270.012 kb on - strand, within rhlB at 1270.012 kb on - strand, within rhlB at 1270.023 kb on - strand, within rhlB at 1270.061 kb on + strand, within rhlB at 1270.062 kb on - strand, within rhlB at 1270.083 kb on + strand, within rhlB at 1270.084 kb on - strand, within rhlB at 1270.084 kb on - strand, within rhlB at 1270.103 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.113 kb on + strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.114 kb on - strand, within rhlB at 1270.143 kb on + strand at 1270.144 kb on - strand at 1270.202 kb on + strand at 1270.202 kb on + strand at 1270.202 kb on + strand at 1270.258 kb on - strand at 1270.261 kb on + strand at 1270.261 kb on + strand at 1270.261 kb on + strand at 1270.262 kb on - strand at 1270.272 kb on - strand at 1270.292 kb on + strand at 1270.328 kb on - strand at 1270.328 kb on - strand at 1270.328 kb on - strand at 1270.328 kb on - strand at 1270.328 kb on - strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.332 kb on + strand at 1270.333 kb on - strand at 1270.333 kb on - strand at 1270.333 kb on - strand at 1270.333 kb on - strand at 1270.333 kb on - strand at 1270.335 kb on + strand at 1270.335 kb on + strand at 1270.335 kb on + strand at 1270.335 kb on + strand at 1270.336 kb on - strand at 1270.336 kb on - strand at 1270.336 kb on - strand at 1270.392 kb on + strand at 1270.393 kb on - strand at 1270.393 kb on - strand at 1270.440 kb on + strand at 1270.441 kb on - strand at 1270.450 kb on - strand at 1270.551 kb on + strand, within gppA at 1270.611 kb on + strand, within gppA at 1270.652 kb on + strand, within gppA at 1270.653 kb on - strand, within gppA at 1270.653 kb on - strand, within gppA at 1270.653 kb on - strand, within gppA at 1270.681 kb on - strand, within gppA at 1270.754 kb on - strand, within gppA at 1270.808 kb on + strand, within gppA at 1270.809 kb on - strand, within gppA at 1270.903 kb on + strand, within gppA at 1270.970 kb on + strand, within gppA at 1270.970 kb on + strand, within gppA at 1270.971 kb on - strand, within gppA at 1270.992 kb on - strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.241 kb on + strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.242 kb on - strand, within gppA at 1271.281 kb on + strand, within gppA at 1271.282 kb on - strand, within gppA at 1271.335 kb on - strand, within gppA at 1271.337 kb on + strand, within gppA at 1271.352 kb on + strand, within gppA at 1271.353 kb on - strand, within gppA at 1271.528 kb on - strand, within gppA at 1271.538 kb on + strand, within gppA at 1271.608 kb on - strand, within gppA at 1271.608 kb on - strand, within gppA at 1271.744 kb on + strand at 1271.752 kb on - strand at 1271.820 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.848 kb on + strand at 1271.849 kb on - strand at 1271.849 kb on - strand at 1271.849 kb on - strand at 1271.849 kb on - strand at 1271.875 kb on + strand at 1271.882 kb on + strand at 1271.883 kb on - strand at 1271.883 kb on - strand at 1271.883 kb on - strand at 1271.925 kb on + strand at 1271.925 kb on + strand at 1271.925 kb on + strand at 1271.926 kb on - strand at 1271.926 kb on - strand at 1272.157 kb on - strand, within rep at 1272.496 kb on - strand, within rep
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 1,269,427 + rhlB NOLOHH_06735 0.34 +0.2 1,269,427 + rhlB NOLOHH_06735 0.34 +1.1 1,269,428 - rhlB NOLOHH_06735 0.34 -0.7 1,269,428 - rhlB NOLOHH_06735 0.34 +0.5 1,269,435 + rhlB NOLOHH_06735 0.35 +0.7 1,269,436 - rhlB NOLOHH_06735 0.35 +0.6 1,269,436 - rhlB NOLOHH_06735 0.35 -1.6 1,269,476 - rhlB NOLOHH_06735 0.38 -0.7 1,269,504 + rhlB NOLOHH_06735 0.40 +0.8 1,269,505 - rhlB NOLOHH_06735 0.40 +0.6 1,269,518 + rhlB NOLOHH_06735 0.41 +0.6 1,269,521 + rhlB NOLOHH_06735 0.42 -0.6 1,269,521 + rhlB NOLOHH_06735 0.42 -0.2 1,269,522 - rhlB NOLOHH_06735 0.42 +0.3 1,269,522 - rhlB NOLOHH_06735 0.42 -0.5 1,269,528 - rhlB NOLOHH_06735 0.42 -2.4 1,269,645 + rhlB NOLOHH_06735 0.51 +0.4 1,269,646 - rhlB NOLOHH_06735 0.52 -0.7 1,269,647 + rhlB NOLOHH_06735 0.52 -0.0 1,269,647 + rhlB NOLOHH_06735 0.52 -1.8 1,269,647 + rhlB NOLOHH_06735 0.52 +0.2 1,269,647 + rhlB NOLOHH_06735 0.52 +0.7 1,269,648 - rhlB NOLOHH_06735 0.52 +1.0 1,269,684 - rhlB NOLOHH_06735 0.55 -1.4 1,269,686 + rhlB NOLOHH_06735 0.55 +1.0 1,269,687 - rhlB NOLOHH_06735 0.55 +0.4 1,269,687 - rhlB NOLOHH_06735 0.55 -0.2 1,269,687 - rhlB NOLOHH_06735 0.55 -0.4 1,269,710 + rhlB NOLOHH_06735 0.57 +0.6 1,269,710 + rhlB NOLOHH_06735 0.57 +0.6 1,269,773 + rhlB NOLOHH_06735 0.62 -0.8 1,269,884 + rhlB NOLOHH_06735 0.70 -0.3 1,269,884 + rhlB NOLOHH_06735 0.70 -0.5 1,269,956 + rhlB NOLOHH_06735 0.76 +0.2 1,269,957 - rhlB NOLOHH_06735 0.76 -1.3 1,269,980 + rhlB NOLOHH_06735 0.78 -1.4 1,269,980 + rhlB NOLOHH_06735 0.78 -0.1 1,269,981 - rhlB NOLOHH_06735 0.78 +0.6 1,269,984 + rhlB NOLOHH_06735 0.78 +0.3 1,269,984 + rhlB NOLOHH_06735 0.78 -0.0 1,269,984 + rhlB NOLOHH_06735 0.78 +0.4 1,269,985 - rhlB NOLOHH_06735 0.78 +0.1 1,270,011 + rhlB NOLOHH_06735 0.80 -0.1 1,270,012 - rhlB NOLOHH_06735 0.80 +2.2 1,270,012 - rhlB NOLOHH_06735 0.80 -0.7 1,270,023 - rhlB NOLOHH_06735 0.81 -0.5 1,270,061 + rhlB NOLOHH_06735 0.84 +0.4 1,270,062 - rhlB NOLOHH_06735 0.84 +0.6 1,270,083 + rhlB NOLOHH_06735 0.86 +0.4 1,270,084 - rhlB NOLOHH_06735 0.86 -0.9 1,270,084 - rhlB NOLOHH_06735 0.86 -0.9 1,270,103 + rhlB NOLOHH_06735 0.88 -2.4 1,270,113 + rhlB NOLOHH_06735 0.88 +0.4 1,270,113 + rhlB NOLOHH_06735 0.88 -0.5 1,270,113 + rhlB NOLOHH_06735 0.88 -0.1 1,270,113 + rhlB NOLOHH_06735 0.88 -0.7 1,270,113 + rhlB NOLOHH_06735 0.88 +0.3 1,270,113 + rhlB NOLOHH_06735 0.88 -1.0 1,270,113 + rhlB NOLOHH_06735 0.88 -0.4 1,270,113 + rhlB NOLOHH_06735 0.88 -1.2 1,270,113 + rhlB NOLOHH_06735 0.88 -0.4 1,270,113 + rhlB NOLOHH_06735 0.88 -1.0 1,270,113 + rhlB NOLOHH_06735 0.88 +0.7 1,270,113 + rhlB NOLOHH_06735 0.88 +0.6 1,270,113 + rhlB NOLOHH_06735 0.88 -1.0 1,270,113 + rhlB NOLOHH_06735 0.88 +0.2 1,270,113 + rhlB NOLOHH_06735 0.88 -0.9 1,270,113 + rhlB NOLOHH_06735 0.88 +0.4 1,270,113 + rhlB NOLOHH_06735 0.88 -0.2 1,270,113 + rhlB NOLOHH_06735 0.88 -1.5 1,270,113 + rhlB NOLOHH_06735 0.88 -0.1 1,270,113 + rhlB NOLOHH_06735 0.88 -1.2 1,270,113 + rhlB NOLOHH_06735 0.88 +0.2 1,270,113 + rhlB NOLOHH_06735 0.88 +0.1 1,270,113 + rhlB NOLOHH_06735 0.88 -1.1 1,270,113 + rhlB NOLOHH_06735 0.88 +0.3 1,270,113 + rhlB NOLOHH_06735 0.88 +0.2 1,270,113 + rhlB NOLOHH_06735 0.88 +0.4 1,270,113 + rhlB NOLOHH_06735 0.88 +0.9 1,270,114 - rhlB NOLOHH_06735 0.88 +0.4 1,270,114 - rhlB NOLOHH_06735 0.88 +0.1 1,270,114 - rhlB NOLOHH_06735 0.88 +0.6 1,270,114 - rhlB NOLOHH_06735 0.88 -0.9 1,270,114 - rhlB NOLOHH_06735 0.88 +0.1 1,270,114 - rhlB NOLOHH_06735 0.88 -0.9 1,270,114 - rhlB NOLOHH_06735 0.88 +0.6 1,270,114 - rhlB NOLOHH_06735 0.88 -0.9 1,270,114 - rhlB NOLOHH_06735 0.88 +0.2 1,270,114 - rhlB NOLOHH_06735 0.88 -0.7 1,270,114 - rhlB NOLOHH_06735 0.88 -1.7 1,270,114 - rhlB NOLOHH_06735 0.88 -0.2 1,270,114 - rhlB NOLOHH_06735 0.88 +2.2 1,270,114 - rhlB NOLOHH_06735 0.88 +0.1 1,270,114 - rhlB NOLOHH_06735 0.88 +0.3 1,270,114 - rhlB NOLOHH_06735 0.88 +0.2 1,270,114 - rhlB NOLOHH_06735 0.88 +1.6 1,270,143 + -0.8 1,270,144 - +0.1 1,270,202 + +0.8 1,270,202 + +0.6 1,270,202 + +0.6 1,270,258 - +1.4 1,270,261 + -0.1 1,270,261 + +1.3 1,270,261 + +0.6 1,270,262 - +0.2 1,270,272 - -0.7 1,270,292 + -0.0 1,270,328 - +0.6 1,270,328 - +0.8 1,270,328 - -1.1 1,270,328 - -0.0 1,270,328 - -0.6 1,270,332 + -0.7 1,270,332 + -0.4 1,270,332 + +0.1 1,270,332 + +0.3 1,270,332 + -0.4 1,270,332 + +1.3 1,270,332 + -1.0 1,270,333 - +0.2 1,270,333 - +0.6 1,270,333 - -0.5 1,270,333 - +0.2 1,270,333 - -0.1 1,270,335 + +0.7 1,270,335 + -1.0 1,270,335 + -0.6 1,270,335 + -0.1 1,270,336 - +1.8 1,270,336 - -0.6 1,270,336 - +0.3 1,270,392 + -0.3 1,270,393 - -0.3 1,270,393 - +0.6 1,270,440 + -0.3 1,270,441 - -0.6 1,270,450 - +0.4 1,270,551 + gppA NOLOHH_06740 0.11 -1.4 1,270,611 + gppA NOLOHH_06740 0.15 +0.1 1,270,652 + gppA NOLOHH_06740 0.17 -0.6 1,270,653 - gppA NOLOHH_06740 0.18 +1.5 1,270,653 - gppA NOLOHH_06740 0.18 -0.1 1,270,653 - gppA NOLOHH_06740 0.18 -0.0 1,270,681 - gppA NOLOHH_06740 0.19 +0.0 1,270,754 - gppA NOLOHH_06740 0.24 -1.1 1,270,808 + gppA NOLOHH_06740 0.28 -0.2 1,270,809 - gppA NOLOHH_06740 0.28 -0.0 1,270,903 + gppA NOLOHH_06740 0.34 -0.1 1,270,970 + gppA NOLOHH_06740 0.39 -0.3 1,270,970 + gppA NOLOHH_06740 0.39 -2.4 1,270,971 - gppA NOLOHH_06740 0.39 -0.4 1,270,992 - gppA NOLOHH_06740 0.40 -0.7 1,271,241 + gppA NOLOHH_06740 0.57 +0.8 1,271,241 + gppA NOLOHH_06740 0.57 +0.8 1,271,241 + gppA NOLOHH_06740 0.57 -2.0 1,271,241 + gppA NOLOHH_06740 0.57 -1.0 1,271,241 + gppA NOLOHH_06740 0.57 -0.8 1,271,241 + gppA NOLOHH_06740 0.57 +1.6 1,271,241 + gppA NOLOHH_06740 0.57 -1.0 1,271,241 + gppA NOLOHH_06740 0.57 -1.2 1,271,241 + gppA NOLOHH_06740 0.57 +0.6 1,271,242 - gppA NOLOHH_06740 0.57 +0.3 1,271,242 - gppA NOLOHH_06740 0.57 -0.0 1,271,242 - gppA NOLOHH_06740 0.57 -0.3 1,271,242 - gppA NOLOHH_06740 0.57 +2.6 1,271,242 - gppA NOLOHH_06740 0.57 +0.3 1,271,242 - gppA NOLOHH_06740 0.57 +0.6 1,271,281 + gppA NOLOHH_06740 0.60 +0.2 1,271,282 - gppA NOLOHH_06740 0.60 -0.7 1,271,335 - gppA NOLOHH_06740 0.63 +0.2 1,271,337 + gppA NOLOHH_06740 0.64 -0.9 1,271,352 + gppA NOLOHH_06740 0.65 +0.9 1,271,353 - gppA NOLOHH_06740 0.65 +0.6 1,271,528 - gppA NOLOHH_06740 0.76 -1.0 1,271,538 + gppA NOLOHH_06740 0.77 -0.2 1,271,608 - gppA NOLOHH_06740 0.82 -0.7 1,271,608 - gppA NOLOHH_06740 0.82 -0.6 1,271,744 + -0.4 1,271,752 - -0.2 1,271,820 + +0.8 1,271,848 + +0.3 1,271,848 + +0.4 1,271,848 + -0.0 1,271,848 + -0.8 1,271,848 + +0.6 1,271,848 + +0.2 1,271,848 + -0.6 1,271,848 + -2.4 1,271,848 + +1.3 1,271,848 + +0.7 1,271,848 + -0.0 1,271,848 + -1.0 1,271,848 + -1.0 1,271,848 + -0.2 1,271,849 - -0.3 1,271,849 - -0.9 1,271,849 - -0.0 1,271,849 - -0.3 1,271,875 + +0.1 1,271,882 + -1.2 1,271,883 - +0.7 1,271,883 - -0.0 1,271,883 - -0.6 1,271,925 + -0.0 1,271,925 + -0.5 1,271,925 + +1.6 1,271,926 - +0.4 1,271,926 - -0.8 1,272,157 - rep NOLOHH_06745 0.12 +0.6 1,272,496 - rep NOLOHH_06745 0.28 +0.6
Or see this region's nucleotide sequence