Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05810

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkatG and metF are separated by 328 nucleotidesmetF and metL are separated by 348 nucleotides NOLOHH_05805: katG - catalase/peroxidase HPI, at 1,087,311 to 1,089,491 katG NOLOHH_05810: metF - methylenetetrahydrofolate reductase, at 1,089,820 to 1,090,710 metF NOLOHH_05815: metL - bifunctional aspartate kinase/homoserine dehydrogenase II, at 1,091,059 to 1,093,491 metL Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1088.906 kb on + strand, within katGat 1088.906 kb on + strand, within katGat 1088.906 kb on + strand, within katGat 1088.906 kb on + strand, within katGat 1088.907 kb on - strand, within katGat 1088.907 kb on - strand, within katGat 1088.907 kb on - strand, within katGat 1088.961 kb on - strand, within katGat 1089.034 kb on + strand, within katGat 1089.034 kb on + strand, within katGat 1089.034 kb on + strand, within katGat 1089.035 kb on - strand, within katGat 1089.035 kb on - strand, within katGat 1089.035 kb on - strand, within katGat 1089.035 kb on - strand, within katGat 1089.081 kb on + strand, within katGat 1089.081 kb on + strand, within katGat 1089.081 kb on + strand, within katGat 1089.081 kb on + strand, within katGat 1089.082 kb on - strand, within katGat 1089.082 kb on - strand, within katGat 1089.082 kb on - strand, within katGat 1089.082 kb on - strand, within katGat 1089.082 kb on - strand, within katGat 1089.160 kb on + strand, within katGat 1089.160 kb on + strand, within katGat 1089.160 kb on + strand, within katGat 1089.161 kb on - strand, within katGat 1089.161 kb on - strand, within katGat 1089.164 kb on + strand, within katGat 1089.205 kb on + strand, within katGat 1089.206 kb on - strand, within katGat 1089.277 kb on + strandat 1089.278 kb on - strandat 1089.281 kb on - strandat 1089.285 kb on + strandat 1089.332 kb on + strandat 1089.341 kb on + strandat 1089.342 kb on - strandat 1089.507 kb on + strandat 1089.507 kb on + strandat 1089.587 kb on - strandat 1089.587 kb on - strandat 1089.590 kb on + strandat 1089.610 kb on + strandat 1089.627 kb on - strandat 1089.671 kb on + strandat 1089.685 kb on - strandat 1089.693 kb on - strandat 1089.693 kb on - strandat 1089.703 kb on + strandat 1089.704 kb on - strandat 1089.817 kb on + strandat 1089.817 kb on + strandat 1089.817 kb on + strandat 1089.818 kb on - strandat 1089.818 kb on - strandat 1089.821 kb on + strandat 1089.821 kb on + strandat 1089.821 kb on + strandat 1089.821 kb on + strandat 1089.886 kb on - strandat 1089.887 kb on + strandat 1089.887 kb on + strandat 1089.887 kb on + strandat 1089.887 kb on + strandat 1089.887 kb on + strandat 1089.887 kb on + strandat 1089.888 kb on - strandat 1089.888 kb on - strandat 1089.888 kb on - strandat 1089.888 kb on - strandat 1089.933 kb on + strand, within metFat 1089.934 kb on - strand, within metFat 1089.934 kb on - strand, within metFat 1089.945 kb on + strand, within metFat 1089.945 kb on + strand, within metFat 1089.945 kb on + strand, within metFat 1089.945 kb on + strand, within metFat 1090.059 kb on + strand, within metFat 1090.060 kb on - strand, within metFat 1090.114 kb on + strand, within metFat 1090.140 kb on - strand, within metFat 1090.168 kb on - strand, within metFat 1090.168 kb on - strand, within metFat 1090.168 kb on - strand, within metFat 1090.319 kb on + strand, within metFat 1090.319 kb on + strand, within metFat 1090.319 kb on + strand, within metFat 1090.386 kb on + strand, within metFat 1090.444 kb on - strand, within metFat 1090.444 kb on - strand, within metFat 1090.444 kb on - strand, within metFat 1090.444 kb on - strand, within metFat 1090.489 kb on - strand, within metFat 1090.491 kb on + strand, within metFat 1090.491 kb on + strand, within metFat 1090.491 kb on + strand, within metFat 1090.492 kb on - strand, within metFat 1090.492 kb on - strand, within metFat 1090.532 kb on + strand, within metFat 1090.532 kb on + strand, within metFat 1090.532 kb on + strand, within metFat 1090.543 kb on + strand, within metFat 1090.567 kb on - strand, within metFat 1090.642 kb on - strandat 1090.710 kb on + strandat 1090.710 kb on + strandat 1090.711 kb on - strandat 1090.711 kb on - strandat 1090.711 kb on - strandat 1090.715 kb on + strandat 1090.716 kb on - strandat 1090.716 kb on - strandat 1090.733 kb on + strandat 1090.733 kb on + strandat 1090.733 kb on + strandat 1090.733 kb on + strandat 1090.733 kb on + strandat 1090.733 kb on + strandat 1090.734 kb on - strandat 1090.734 kb on - strandat 1090.734 kb on - strandat 1090.734 kb on - strandat 1090.734 kb on - strandat 1090.737 kb on + strandat 1090.737 kb on + strandat 1090.737 kb on + strandat 1090.737 kb on + strandat 1090.737 kb on + strandat 1090.737 kb on + strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.738 kb on - strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.739 kb on + strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.740 kb on - strandat 1090.872 kb on + strandat 1090.873 kb on - strandat 1090.916 kb on + strandat 1090.916 kb on + strandat 1090.917 kb on - strandat 1090.917 kb on - strandat 1090.918 kb on + strandat 1090.919 kb on - strandat 1090.923 kb on + strandat 1090.923 kb on + strandat 1090.923 kb on + strandat 1090.923 kb on + strandat 1090.924 kb on - strandat 1090.924 kb on - strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.931 kb on + strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.932 kb on - strandat 1090.935 kb on + strandat 1090.935 kb on + strandat 1090.935 kb on + strandat 1090.936 kb on - strandat 1090.936 kb on - strandat 1090.936 kb on - strandat 1091.016 kb on - strandat 1091.044 kb on - strandat 1091.044 kb on - strandat 1091.046 kb on + strandat 1091.047 kb on - strandat 1091.060 kb on + strandat 1091.060 kb on + strandat 1091.280 kb on - strandat 1091.280 kb on - strandat 1091.338 kb on - strand, within metLat 1091.436 kb on - strand, within metLat 1091.436 kb on - strand, within metLat 1091.473 kb on + strand, within metLat 1091.473 kb on + strand, within metLat 1091.473 kb on + strand, within metLat 1091.473 kb on + strand, within metLat 1091.473 kb on + strand, within metLat 1091.473 kb on + strand, within metLat 1091.474 kb on - strand, within metLat 1091.625 kb on + strand, within metLat 1091.625 kb on + strand, within metLat 1091.626 kb on - strand, within metLat 1091.696 kb on + strand, within metLat 1091.696 kb on + strand, within metLat 1091.696 kb on + strand, within metLat 1091.696 kb on + strand, within metLat 1091.696 kb on + strand, within metLat 1091.697 kb on - strand, within metLat 1091.697 kb on - strand, within metLat 1091.697 kb on - strand, within metL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,088,906 + katG NOLOHH_05805 0.73 +0.8
1,088,906 + katG NOLOHH_05805 0.73 +0.3
1,088,906 + katG NOLOHH_05805 0.73 -0.1
1,088,906 + katG NOLOHH_05805 0.73 -0.3
1,088,907 - katG NOLOHH_05805 0.73 +1.1
1,088,907 - katG NOLOHH_05805 0.73 -1.1
1,088,907 - katG NOLOHH_05805 0.73 -0.5
1,088,961 - katG NOLOHH_05805 0.76 +1.7
1,089,034 + katG NOLOHH_05805 0.79 +0.0
1,089,034 + katG NOLOHH_05805 0.79 +1.1
1,089,034 + katG NOLOHH_05805 0.79 -0.8
1,089,035 - katG NOLOHH_05805 0.79 -0.2
1,089,035 - katG NOLOHH_05805 0.79 -0.2
1,089,035 - katG NOLOHH_05805 0.79 +1.8
1,089,035 - katG NOLOHH_05805 0.79 -0.3
1,089,081 + katG NOLOHH_05805 0.81 -0.6
1,089,081 + katG NOLOHH_05805 0.81 +0.9
1,089,081 + katG NOLOHH_05805 0.81 +0.4
1,089,081 + katG NOLOHH_05805 0.81 +2.5
1,089,082 - katG NOLOHH_05805 0.81 +0.7
1,089,082 - katG NOLOHH_05805 0.81 -0.5
1,089,082 - katG NOLOHH_05805 0.81 +0.3
1,089,082 - katG NOLOHH_05805 0.81 +0.4
1,089,082 - katG NOLOHH_05805 0.81 -0.5
1,089,160 + katG NOLOHH_05805 0.85 -0.4
1,089,160 + katG NOLOHH_05805 0.85 +1.7
1,089,160 + katG NOLOHH_05805 0.85 -0.0
1,089,161 - katG NOLOHH_05805 0.85 -0.4
1,089,161 - katG NOLOHH_05805 0.85 +0.5
1,089,164 + katG NOLOHH_05805 0.85 -0.5
1,089,205 + katG NOLOHH_05805 0.87 +0.5
1,089,206 - katG NOLOHH_05805 0.87 -0.5
1,089,277 + -0.5
1,089,278 - -0.5
1,089,281 - -0.4
1,089,285 + +0.2
1,089,332 + +0.1
1,089,341 + -0.2
1,089,342 - +2.7
1,089,507 + +0.2
1,089,507 + +0.1
1,089,587 - -0.3
1,089,587 - +1.3
1,089,590 + +0.7
1,089,610 + -1.5
1,089,627 - +1.1
1,089,671 + +0.6
1,089,685 - +1.2
1,089,693 - +0.8
1,089,693 - -0.2
1,089,703 + +0.2
1,089,704 - +1.2
1,089,817 + -0.2
1,089,817 + +0.3
1,089,817 + -1.5
1,089,818 - +0.2
1,089,818 - +0.8
1,089,821 + -0.9
1,089,821 + -0.1
1,089,821 + +0.3
1,089,821 + -0.6
1,089,886 - +0.3
1,089,887 + +1.2
1,089,887 + -0.9
1,089,887 + -1.1
1,089,887 + +1.4
1,089,887 + +0.1
1,089,887 + +0.6
1,089,888 - -0.2
1,089,888 - -1.6
1,089,888 - -0.7
1,089,888 - -0.8
1,089,933 + metF NOLOHH_05810 0.13 -0.6
1,089,934 - metF NOLOHH_05810 0.13 +0.1
1,089,934 - metF NOLOHH_05810 0.13 +0.5
1,089,945 + metF NOLOHH_05810 0.14 -0.8
1,089,945 + metF NOLOHH_05810 0.14 -1.2
1,089,945 + metF NOLOHH_05810 0.14 +0.5
1,089,945 + metF NOLOHH_05810 0.14 -0.4
1,090,059 + metF NOLOHH_05810 0.27 -0.2
1,090,060 - metF NOLOHH_05810 0.27 +0.1
1,090,114 + metF NOLOHH_05810 0.33 -0.1
1,090,140 - metF NOLOHH_05810 0.36 +0.6
1,090,168 - metF NOLOHH_05810 0.39 -0.1
1,090,168 - metF NOLOHH_05810 0.39 +0.2
1,090,168 - metF NOLOHH_05810 0.39 -0.5
1,090,319 + metF NOLOHH_05810 0.56 +0.5
1,090,319 + metF NOLOHH_05810 0.56 +1.4
1,090,319 + metF NOLOHH_05810 0.56 +0.1
1,090,386 + metF NOLOHH_05810 0.64 -0.8
1,090,444 - metF NOLOHH_05810 0.70 +0.0
1,090,444 - metF NOLOHH_05810 0.70 -0.2
1,090,444 - metF NOLOHH_05810 0.70 +0.7
1,090,444 - metF NOLOHH_05810 0.70 +0.2
1,090,489 - metF NOLOHH_05810 0.75 -0.2
1,090,491 + metF NOLOHH_05810 0.75 +1.2
1,090,491 + metF NOLOHH_05810 0.75 +0.5
1,090,491 + metF NOLOHH_05810 0.75 +2.1
1,090,492 - metF NOLOHH_05810 0.75 +0.7
1,090,492 - metF NOLOHH_05810 0.75 +0.4
1,090,532 + metF NOLOHH_05810 0.80 +1.5
1,090,532 + metF NOLOHH_05810 0.80 +1.5
1,090,532 + metF NOLOHH_05810 0.80 -0.1
1,090,543 + metF NOLOHH_05810 0.81 -1.4
1,090,567 - metF NOLOHH_05810 0.84 +0.7
1,090,642 - +1.1
1,090,710 + -0.5
1,090,710 + +0.5
1,090,711 - -0.3
1,090,711 - -0.0
1,090,711 - -0.2
1,090,715 + +0.2
1,090,716 - +1.5
1,090,716 - -1.2
1,090,733 + -1.5
1,090,733 + +1.5
1,090,733 + +0.1
1,090,733 + +0.2
1,090,733 + -0.9
1,090,733 + -0.7
1,090,734 - -0.7
1,090,734 - +0.4
1,090,734 - -0.5
1,090,734 - -1.4
1,090,734 - +0.7
1,090,737 + -0.4
1,090,737 + +0.3
1,090,737 + +0.7
1,090,737 + -1.1
1,090,737 + -0.2
1,090,737 + +0.0
1,090,738 - +0.9
1,090,738 - -0.1
1,090,738 - -0.3
1,090,738 - +0.8
1,090,738 - +0.4
1,090,738 - -0.3
1,090,738 - -0.9
1,090,738 - -0.5
1,090,739 + +1.5
1,090,739 + -0.6
1,090,739 + -0.7
1,090,739 + +0.6
1,090,739 + -1.1
1,090,739 + +0.5
1,090,739 + +0.5
1,090,739 + -0.7
1,090,739 + -0.9
1,090,739 + -0.3
1,090,739 + +0.2
1,090,739 + +0.7
1,090,739 + -1.7
1,090,739 + -1.1
1,090,740 - +0.1
1,090,740 - +0.2
1,090,740 - +0.6
1,090,740 - -0.6
1,090,740 - -0.6
1,090,740 - +0.2
1,090,740 - -0.5
1,090,740 - +1.0
1,090,740 - -0.3
1,090,740 - -1.1
1,090,740 - -0.1
1,090,740 - +0.5
1,090,740 - +0.4
1,090,872 + -0.6
1,090,873 - +0.2
1,090,916 + +0.8
1,090,916 + +0.5
1,090,917 - -0.6
1,090,917 - -0.1
1,090,918 + -1.4
1,090,919 - -2.8
1,090,923 + +0.5
1,090,923 + +0.4
1,090,923 + -0.5
1,090,923 + +0.5
1,090,924 - -0.5
1,090,924 - +0.5
1,090,931 + +0.7
1,090,931 + -0.2
1,090,931 + +1.1
1,090,931 + -0.9
1,090,931 + -0.0
1,090,931 + +0.2
1,090,931 + +0.8
1,090,931 + +0.1
1,090,931 + -0.7
1,090,932 - +0.1
1,090,932 - -0.9
1,090,932 - +0.5
1,090,932 - +0.7
1,090,932 - -0.5
1,090,932 - -0.2
1,090,932 - +0.1
1,090,932 - -0.3
1,090,935 + +3.0
1,090,935 + -1.2
1,090,935 + -0.3
1,090,936 - -0.2
1,090,936 - -0.6
1,090,936 - -0.5
1,091,016 - -1.1
1,091,044 - +0.1
1,091,044 - -0.7
1,091,046 + +1.3
1,091,047 - +0.4
1,091,060 + +0.8
1,091,060 + -1.2
1,091,280 - -0.1
1,091,280 - -1.5
1,091,338 - metL NOLOHH_05815 0.11 +0.1
1,091,436 - metL NOLOHH_05815 0.15 +0.5
1,091,436 - metL NOLOHH_05815 0.15 -1.3
1,091,473 + metL NOLOHH_05815 0.17 -0.7
1,091,473 + metL NOLOHH_05815 0.17 -1.5
1,091,473 + metL NOLOHH_05815 0.17 -2.8
1,091,473 + metL NOLOHH_05815 0.17 -1.5
1,091,473 + metL NOLOHH_05815 0.17 +0.2
1,091,473 + metL NOLOHH_05815 0.17 -0.5
1,091,474 - metL NOLOHH_05815 0.17 +1.5
1,091,625 + metL NOLOHH_05815 0.23 -1.9
1,091,625 + metL NOLOHH_05815 0.23 -1.6
1,091,626 - metL NOLOHH_05815 0.23 -0.0
1,091,696 + metL NOLOHH_05815 0.26 -0.2
1,091,696 + metL NOLOHH_05815 0.26 +0.3
1,091,696 + metL NOLOHH_05815 0.26 +0.2
1,091,696 + metL NOLOHH_05815 0.26 -0.3
1,091,696 + metL NOLOHH_05815 0.26 -1.2
1,091,697 - metL NOLOHH_05815 0.26 +0.3
1,091,697 - metL NOLOHH_05815 0.26 +0.5
1,091,697 - metL NOLOHH_05815 0.26 -1.3

Or see this region's nucleotide sequence