Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katG and metF are separated by 328 nucleotides metF and metL are separated by 348 nucleotides
NOLOHH_05805: katG - catalase/peroxidase HPI, at 1,087,311 to 1,089,491
katG
NOLOHH_05810: metF - methylenetetrahydrofolate reductase, at 1,089,820 to 1,090,710
metF
NOLOHH_05815: metL - bifunctional aspartate kinase/homoserine dehydrogenase II, at 1,091,059 to 1,093,491
metL
Position (kb)
1089
1090
1091 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1088.906 kb on + strand, within katG at 1088.906 kb on + strand, within katG at 1088.906 kb on + strand, within katG at 1088.906 kb on + strand, within katG at 1088.907 kb on - strand, within katG at 1088.907 kb on - strand, within katG at 1088.907 kb on - strand, within katG at 1088.961 kb on - strand, within katG at 1089.034 kb on + strand, within katG at 1089.034 kb on + strand, within katG at 1089.034 kb on + strand, within katG at 1089.035 kb on - strand, within katG at 1089.035 kb on - strand, within katG at 1089.035 kb on - strand, within katG at 1089.035 kb on - strand, within katG at 1089.081 kb on + strand, within katG at 1089.081 kb on + strand, within katG at 1089.081 kb on + strand, within katG at 1089.081 kb on + strand, within katG at 1089.082 kb on - strand, within katG at 1089.082 kb on - strand, within katG at 1089.082 kb on - strand, within katG at 1089.082 kb on - strand, within katG at 1089.082 kb on - strand, within katG at 1089.160 kb on + strand, within katG at 1089.160 kb on + strand, within katG at 1089.160 kb on + strand, within katG at 1089.161 kb on - strand, within katG at 1089.161 kb on - strand, within katG at 1089.164 kb on + strand, within katG at 1089.205 kb on + strand, within katG at 1089.206 kb on - strand, within katG at 1089.277 kb on + strand at 1089.278 kb on - strand at 1089.281 kb on - strand at 1089.285 kb on + strand at 1089.332 kb on + strand at 1089.341 kb on + strand at 1089.342 kb on - strand at 1089.507 kb on + strand at 1089.507 kb on + strand at 1089.587 kb on - strand at 1089.587 kb on - strand at 1089.590 kb on + strand at 1089.610 kb on + strand at 1089.627 kb on - strand at 1089.671 kb on + strand at 1089.685 kb on - strand at 1089.693 kb on - strand at 1089.693 kb on - strand at 1089.703 kb on + strand at 1089.704 kb on - strand at 1089.817 kb on + strand at 1089.817 kb on + strand at 1089.817 kb on + strand at 1089.818 kb on - strand at 1089.818 kb on - strand at 1089.821 kb on + strand at 1089.821 kb on + strand at 1089.821 kb on + strand at 1089.821 kb on + strand at 1089.886 kb on - strand at 1089.887 kb on + strand at 1089.887 kb on + strand at 1089.887 kb on + strand at 1089.887 kb on + strand at 1089.887 kb on + strand at 1089.887 kb on + strand at 1089.888 kb on - strand at 1089.888 kb on - strand at 1089.888 kb on - strand at 1089.888 kb on - strand at 1089.933 kb on + strand, within metF at 1089.934 kb on - strand, within metF at 1089.934 kb on - strand, within metF at 1089.945 kb on + strand, within metF at 1089.945 kb on + strand, within metF at 1089.945 kb on + strand, within metF at 1089.945 kb on + strand, within metF at 1090.059 kb on + strand, within metF at 1090.060 kb on - strand, within metF at 1090.114 kb on + strand, within metF at 1090.140 kb on - strand, within metF at 1090.168 kb on - strand, within metF at 1090.168 kb on - strand, within metF at 1090.168 kb on - strand, within metF at 1090.319 kb on + strand, within metF at 1090.319 kb on + strand, within metF at 1090.319 kb on + strand, within metF at 1090.386 kb on + strand, within metF at 1090.444 kb on - strand, within metF at 1090.444 kb on - strand, within metF at 1090.444 kb on - strand, within metF at 1090.444 kb on - strand, within metF at 1090.489 kb on - strand, within metF at 1090.491 kb on + strand, within metF at 1090.491 kb on + strand, within metF at 1090.491 kb on + strand, within metF at 1090.492 kb on - strand, within metF at 1090.492 kb on - strand, within metF at 1090.532 kb on + strand, within metF at 1090.532 kb on + strand, within metF at 1090.532 kb on + strand, within metF at 1090.543 kb on + strand, within metF at 1090.567 kb on - strand, within metF at 1090.642 kb on - strand at 1090.710 kb on + strand at 1090.710 kb on + strand at 1090.711 kb on - strand at 1090.711 kb on - strand at 1090.711 kb on - strand at 1090.715 kb on + strand at 1090.716 kb on - strand at 1090.716 kb on - strand at 1090.733 kb on + strand at 1090.733 kb on + strand at 1090.733 kb on + strand at 1090.733 kb on + strand at 1090.733 kb on + strand at 1090.733 kb on + strand at 1090.734 kb on - strand at 1090.734 kb on - strand at 1090.734 kb on - strand at 1090.734 kb on - strand at 1090.734 kb on - strand at 1090.737 kb on + strand at 1090.737 kb on + strand at 1090.737 kb on + strand at 1090.737 kb on + strand at 1090.737 kb on + strand at 1090.737 kb on + strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.738 kb on - strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.739 kb on + strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.740 kb on - strand at 1090.872 kb on + strand at 1090.873 kb on - strand at 1090.916 kb on + strand at 1090.916 kb on + strand at 1090.917 kb on - strand at 1090.917 kb on - strand at 1090.918 kb on + strand at 1090.919 kb on - strand at 1090.923 kb on + strand at 1090.923 kb on + strand at 1090.923 kb on + strand at 1090.923 kb on + strand at 1090.924 kb on - strand at 1090.924 kb on - strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.931 kb on + strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.932 kb on - strand at 1090.935 kb on + strand at 1090.935 kb on + strand at 1090.935 kb on + strand at 1090.936 kb on - strand at 1090.936 kb on - strand at 1090.936 kb on - strand at 1091.016 kb on - strand at 1091.044 kb on - strand at 1091.044 kb on - strand at 1091.046 kb on + strand at 1091.047 kb on - strand at 1091.060 kb on + strand at 1091.060 kb on + strand at 1091.280 kb on - strand at 1091.280 kb on - strand at 1091.338 kb on - strand, within metL at 1091.436 kb on - strand, within metL at 1091.436 kb on - strand, within metL at 1091.473 kb on + strand, within metL at 1091.473 kb on + strand, within metL at 1091.473 kb on + strand, within metL at 1091.473 kb on + strand, within metL at 1091.473 kb on + strand, within metL at 1091.473 kb on + strand, within metL at 1091.474 kb on - strand, within metL at 1091.625 kb on + strand, within metL at 1091.625 kb on + strand, within metL at 1091.626 kb on - strand, within metL at 1091.696 kb on + strand, within metL at 1091.696 kb on + strand, within metL at 1091.696 kb on + strand, within metL at 1091.696 kb on + strand, within metL at 1091.696 kb on + strand, within metL at 1091.697 kb on - strand, within metL at 1091.697 kb on - strand, within metL at 1091.697 kb on - strand, within metL
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 1,088,906 + katG NOLOHH_05805 0.73 +0.8 1,088,906 + katG NOLOHH_05805 0.73 +0.3 1,088,906 + katG NOLOHH_05805 0.73 -0.1 1,088,906 + katG NOLOHH_05805 0.73 -0.3 1,088,907 - katG NOLOHH_05805 0.73 +1.1 1,088,907 - katG NOLOHH_05805 0.73 -1.1 1,088,907 - katG NOLOHH_05805 0.73 -0.5 1,088,961 - katG NOLOHH_05805 0.76 +1.7 1,089,034 + katG NOLOHH_05805 0.79 +0.0 1,089,034 + katG NOLOHH_05805 0.79 +1.1 1,089,034 + katG NOLOHH_05805 0.79 -0.8 1,089,035 - katG NOLOHH_05805 0.79 -0.2 1,089,035 - katG NOLOHH_05805 0.79 -0.2 1,089,035 - katG NOLOHH_05805 0.79 +1.8 1,089,035 - katG NOLOHH_05805 0.79 -0.3 1,089,081 + katG NOLOHH_05805 0.81 -0.6 1,089,081 + katG NOLOHH_05805 0.81 +0.9 1,089,081 + katG NOLOHH_05805 0.81 +0.4 1,089,081 + katG NOLOHH_05805 0.81 +2.5 1,089,082 - katG NOLOHH_05805 0.81 +0.7 1,089,082 - katG NOLOHH_05805 0.81 -0.5 1,089,082 - katG NOLOHH_05805 0.81 +0.3 1,089,082 - katG NOLOHH_05805 0.81 +0.4 1,089,082 - katG NOLOHH_05805 0.81 -0.5 1,089,160 + katG NOLOHH_05805 0.85 -0.4 1,089,160 + katG NOLOHH_05805 0.85 +1.7 1,089,160 + katG NOLOHH_05805 0.85 -0.0 1,089,161 - katG NOLOHH_05805 0.85 -0.4 1,089,161 - katG NOLOHH_05805 0.85 +0.5 1,089,164 + katG NOLOHH_05805 0.85 -0.5 1,089,205 + katG NOLOHH_05805 0.87 +0.5 1,089,206 - katG NOLOHH_05805 0.87 -0.5 1,089,277 + -0.5 1,089,278 - -0.5 1,089,281 - -0.4 1,089,285 + +0.2 1,089,332 + +0.1 1,089,341 + -0.2 1,089,342 - +2.7 1,089,507 + +0.2 1,089,507 + +0.1 1,089,587 - -0.3 1,089,587 - +1.3 1,089,590 + +0.7 1,089,610 + -1.5 1,089,627 - +1.1 1,089,671 + +0.6 1,089,685 - +1.2 1,089,693 - +0.8 1,089,693 - -0.2 1,089,703 + +0.2 1,089,704 - +1.2 1,089,817 + -0.2 1,089,817 + +0.3 1,089,817 + -1.5 1,089,818 - +0.2 1,089,818 - +0.8 1,089,821 + -0.9 1,089,821 + -0.1 1,089,821 + +0.3 1,089,821 + -0.6 1,089,886 - +0.3 1,089,887 + +1.2 1,089,887 + -0.9 1,089,887 + -1.1 1,089,887 + +1.4 1,089,887 + +0.1 1,089,887 + +0.6 1,089,888 - -0.2 1,089,888 - -1.6 1,089,888 - -0.7 1,089,888 - -0.8 1,089,933 + metF NOLOHH_05810 0.13 -0.6 1,089,934 - metF NOLOHH_05810 0.13 +0.1 1,089,934 - metF NOLOHH_05810 0.13 +0.5 1,089,945 + metF NOLOHH_05810 0.14 -0.8 1,089,945 + metF NOLOHH_05810 0.14 -1.2 1,089,945 + metF NOLOHH_05810 0.14 +0.5 1,089,945 + metF NOLOHH_05810 0.14 -0.4 1,090,059 + metF NOLOHH_05810 0.27 -0.2 1,090,060 - metF NOLOHH_05810 0.27 +0.1 1,090,114 + metF NOLOHH_05810 0.33 -0.1 1,090,140 - metF NOLOHH_05810 0.36 +0.6 1,090,168 - metF NOLOHH_05810 0.39 -0.1 1,090,168 - metF NOLOHH_05810 0.39 +0.2 1,090,168 - metF NOLOHH_05810 0.39 -0.5 1,090,319 + metF NOLOHH_05810 0.56 +0.5 1,090,319 + metF NOLOHH_05810 0.56 +1.4 1,090,319 + metF NOLOHH_05810 0.56 +0.1 1,090,386 + metF NOLOHH_05810 0.64 -0.8 1,090,444 - metF NOLOHH_05810 0.70 +0.0 1,090,444 - metF NOLOHH_05810 0.70 -0.2 1,090,444 - metF NOLOHH_05810 0.70 +0.7 1,090,444 - metF NOLOHH_05810 0.70 +0.2 1,090,489 - metF NOLOHH_05810 0.75 -0.2 1,090,491 + metF NOLOHH_05810 0.75 +1.2 1,090,491 + metF NOLOHH_05810 0.75 +0.5 1,090,491 + metF NOLOHH_05810 0.75 +2.1 1,090,492 - metF NOLOHH_05810 0.75 +0.7 1,090,492 - metF NOLOHH_05810 0.75 +0.4 1,090,532 + metF NOLOHH_05810 0.80 +1.5 1,090,532 + metF NOLOHH_05810 0.80 +1.5 1,090,532 + metF NOLOHH_05810 0.80 -0.1 1,090,543 + metF NOLOHH_05810 0.81 -1.4 1,090,567 - metF NOLOHH_05810 0.84 +0.7 1,090,642 - +1.1 1,090,710 + -0.5 1,090,710 + +0.5 1,090,711 - -0.3 1,090,711 - -0.0 1,090,711 - -0.2 1,090,715 + +0.2 1,090,716 - +1.5 1,090,716 - -1.2 1,090,733 + -1.5 1,090,733 + +1.5 1,090,733 + +0.1 1,090,733 + +0.2 1,090,733 + -0.9 1,090,733 + -0.7 1,090,734 - -0.7 1,090,734 - +0.4 1,090,734 - -0.5 1,090,734 - -1.4 1,090,734 - +0.7 1,090,737 + -0.4 1,090,737 + +0.3 1,090,737 + +0.7 1,090,737 + -1.1 1,090,737 + -0.2 1,090,737 + +0.0 1,090,738 - +0.9 1,090,738 - -0.1 1,090,738 - -0.3 1,090,738 - +0.8 1,090,738 - +0.4 1,090,738 - -0.3 1,090,738 - -0.9 1,090,738 - -0.5 1,090,739 + +1.5 1,090,739 + -0.6 1,090,739 + -0.7 1,090,739 + +0.6 1,090,739 + -1.1 1,090,739 + +0.5 1,090,739 + +0.5 1,090,739 + -0.7 1,090,739 + -0.9 1,090,739 + -0.3 1,090,739 + +0.2 1,090,739 + +0.7 1,090,739 + -1.7 1,090,739 + -1.1 1,090,740 - +0.1 1,090,740 - +0.2 1,090,740 - +0.6 1,090,740 - -0.6 1,090,740 - -0.6 1,090,740 - +0.2 1,090,740 - -0.5 1,090,740 - +1.0 1,090,740 - -0.3 1,090,740 - -1.1 1,090,740 - -0.1 1,090,740 - +0.5 1,090,740 - +0.4 1,090,872 + -0.6 1,090,873 - +0.2 1,090,916 + +0.8 1,090,916 + +0.5 1,090,917 - -0.6 1,090,917 - -0.1 1,090,918 + -1.4 1,090,919 - -2.8 1,090,923 + +0.5 1,090,923 + +0.4 1,090,923 + -0.5 1,090,923 + +0.5 1,090,924 - -0.5 1,090,924 - +0.5 1,090,931 + +0.7 1,090,931 + -0.2 1,090,931 + +1.1 1,090,931 + -0.9 1,090,931 + -0.0 1,090,931 + +0.2 1,090,931 + +0.8 1,090,931 + +0.1 1,090,931 + -0.7 1,090,932 - +0.1 1,090,932 - -0.9 1,090,932 - +0.5 1,090,932 - +0.7 1,090,932 - -0.5 1,090,932 - -0.2 1,090,932 - +0.1 1,090,932 - -0.3 1,090,935 + +3.0 1,090,935 + -1.2 1,090,935 + -0.3 1,090,936 - -0.2 1,090,936 - -0.6 1,090,936 - -0.5 1,091,016 - -1.1 1,091,044 - +0.1 1,091,044 - -0.7 1,091,046 + +1.3 1,091,047 - +0.4 1,091,060 + +0.8 1,091,060 + -1.2 1,091,280 - -0.1 1,091,280 - -1.5 1,091,338 - metL NOLOHH_05815 0.11 +0.1 1,091,436 - metL NOLOHH_05815 0.15 +0.5 1,091,436 - metL NOLOHH_05815 0.15 -1.3 1,091,473 + metL NOLOHH_05815 0.17 -0.7 1,091,473 + metL NOLOHH_05815 0.17 -1.5 1,091,473 + metL NOLOHH_05815 0.17 -2.8 1,091,473 + metL NOLOHH_05815 0.17 -1.5 1,091,473 + metL NOLOHH_05815 0.17 +0.2 1,091,473 + metL NOLOHH_05815 0.17 -0.5 1,091,474 - metL NOLOHH_05815 0.17 +1.5 1,091,625 + metL NOLOHH_05815 0.23 -1.9 1,091,625 + metL NOLOHH_05815 0.23 -1.6 1,091,626 - metL NOLOHH_05815 0.23 -0.0 1,091,696 + metL NOLOHH_05815 0.26 -0.2 1,091,696 + metL NOLOHH_05815 0.26 +0.3 1,091,696 + metL NOLOHH_05815 0.26 +0.2 1,091,696 + metL NOLOHH_05815 0.26 -0.3 1,091,696 + metL NOLOHH_05815 0.26 -1.2 1,091,697 - metL NOLOHH_05815 0.26 +0.3 1,091,697 - metL NOLOHH_05815 0.26 +0.5 1,091,697 - metL NOLOHH_05815 0.26 -1.3
Or see this region's nucleotide sequence