Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusA and yjbM are separated by 362 nucleotides yjbM and zur are separated by 317 nucleotides zur and yjbJ are separated by 41 nucleotides
NOLOHH_05195: dusA - tRNA dihydrouridine(20/20a) synthase DusA, at 955,870 to 956,907
dusA
NOLOHH_05200: yjbM - Uncharacterized protein YjbM, at 957,270 to 958,286
yjbM
NOLOHH_05205: zur - zinc uptake transcriptional repressor Zur, at 958,604 to 959,119
zur
NOLOHH_05210: yjbJ - UPF0337 protein YjbJ, at 959,161 to 959,370
yjbJ
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.274 kb on - strand, within dusA at 956.343 kb on + strand, within dusA at 956.417 kb on + strand, within dusA at 956.418 kb on - strand, within dusA at 956.418 kb on - strand, within dusA at 956.418 kb on - strand, within dusA at 956.688 kb on - strand, within dusA at 956.715 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.745 kb on - strand, within dusA at 956.745 kb on - strand, within dusA at 956.754 kb on + strand, within dusA at 956.755 kb on - strand, within dusA at 956.755 kb on - strand, within dusA at 956.755 kb on - strand, within dusA at 956.937 kb on + strand at 956.967 kb on - strand at 956.993 kb on + strand at 956.993 kb on + strand at 956.993 kb on + strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.995 kb on + strand at 956.995 kb on + strand at 956.995 kb on + strand at 957.171 kb on + strand at 957.173 kb on + strand at 957.517 kb on + strand, within yjbM at 957.718 kb on - strand, within yjbM at 957.868 kb on - strand, within yjbM at 957.869 kb on + strand, within yjbM at 957.872 kb on + strand, within yjbM at 957.961 kb on + strand, within yjbM at 958.565 kb on - strand at 958.565 kb on - strand at 958.569 kb on + strand at 958.569 kb on + strand at 958.570 kb on - strand at 958.570 kb on - strand at 958.663 kb on + strand, within zur at 958.664 kb on - strand, within zur at 958.726 kb on + strand, within zur at 958.737 kb on - strand, within zur at 958.856 kb on + strand, within zur at 958.856 kb on + strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.907 kb on - strand, within zur at 958.963 kb on + strand, within zur at 958.969 kb on + strand, within zur at 958.969 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.006 kb on - strand, within zur at 959.006 kb on - strand, within zur at 959.127 kb on + strand at 959.127 kb on + strand at 959.127 kb on + strand at 959.127 kb on + strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.137 kb on + strand at 959.137 kb on + strand at 959.137 kb on + strand at 959.138 kb on - strand at 959.138 kb on - strand at 959.158 kb on + strand at 959.163 kb on - strand at 959.232 kb on - strand, within yjbJ at 959.268 kb on + strand, within yjbJ at 959.286 kb on + strand, within yjbJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 956,274 - dusA NOLOHH_05195 0.39 +0.3 956,343 + dusA NOLOHH_05195 0.46 -0.5 956,417 + dusA NOLOHH_05195 0.53 -0.9 956,418 - dusA NOLOHH_05195 0.53 -0.6 956,418 - dusA NOLOHH_05195 0.53 -0.3 956,418 - dusA NOLOHH_05195 0.53 -0.1 956,688 - dusA NOLOHH_05195 0.79 -0.4 956,715 + dusA NOLOHH_05195 0.81 -0.1 956,744 + dusA NOLOHH_05195 0.84 -1.8 956,744 + dusA NOLOHH_05195 0.84 -0.5 956,744 + dusA NOLOHH_05195 0.84 -0.7 956,745 - dusA NOLOHH_05195 0.84 -0.2 956,745 - dusA NOLOHH_05195 0.84 -0.2 956,754 + dusA NOLOHH_05195 0.85 +0.5 956,755 - dusA NOLOHH_05195 0.85 -0.1 956,755 - dusA NOLOHH_05195 0.85 -1.1 956,755 - dusA NOLOHH_05195 0.85 -0.5 956,937 + +0.3 956,967 - +0.5 956,993 + +1.2 956,993 + -1.3 956,993 + -0.4 956,994 - -0.6 956,994 - -0.3 956,994 - -0.3 956,994 - -0.0 956,994 - +0.2 956,994 - +1.5 956,994 - +0.5 956,995 + -1.3 956,995 + +0.5 956,995 + +0.5 957,171 + -0.2 957,173 + +1.8 957,517 + yjbM NOLOHH_05200 0.24 +0.3 957,718 - yjbM NOLOHH_05200 0.44 +0.9 957,868 - yjbM NOLOHH_05200 0.59 +1.3 957,869 + yjbM NOLOHH_05200 0.59 -0.0 957,872 + yjbM NOLOHH_05200 0.59 +1.0 957,961 + yjbM NOLOHH_05200 0.68 +0.5 958,565 - -0.7 958,565 - +0.6 958,569 + -1.1 958,569 + +1.1 958,570 - +1.1 958,570 - -1.8 958,663 + zur NOLOHH_05205 0.11 -1.1 958,664 - zur NOLOHH_05205 0.12 -1.1 958,726 + zur NOLOHH_05205 0.24 -0.4 958,737 - zur NOLOHH_05205 0.26 +0.5 958,856 + zur NOLOHH_05205 0.49 -0.4 958,856 + zur NOLOHH_05205 0.49 -1.0 958,857 - zur NOLOHH_05205 0.49 -1.1 958,857 - zur NOLOHH_05205 0.49 -2.5 958,857 - zur NOLOHH_05205 0.49 +0.5 958,857 - zur NOLOHH_05205 0.49 -0.6 958,857 - zur NOLOHH_05205 0.49 -1.0 958,857 - zur NOLOHH_05205 0.49 -0.1 958,891 + zur NOLOHH_05205 0.56 -0.8 958,891 + zur NOLOHH_05205 0.56 -0.2 958,891 + zur NOLOHH_05205 0.56 +0.5 958,891 + zur NOLOHH_05205 0.56 -0.9 958,907 - zur NOLOHH_05205 0.59 -0.5 958,963 + zur NOLOHH_05205 0.70 +0.3 958,969 + zur NOLOHH_05205 0.71 -1.5 958,969 + zur NOLOHH_05205 0.71 -0.5 959,005 + zur NOLOHH_05205 0.78 -0.8 959,005 + zur NOLOHH_05205 0.78 -0.5 959,005 + zur NOLOHH_05205 0.78 -0.5 959,006 - zur NOLOHH_05205 0.78 +0.5 959,006 - zur NOLOHH_05205 0.78 -0.7 959,127 + -0.3 959,127 + +0.3 959,127 + +0.4 959,127 + +0.5 959,128 - -0.3 959,128 - -1.5 959,128 - -0.5 959,128 - -0.1 959,137 + -1.0 959,137 + +0.0 959,137 + -1.1 959,138 - +0.5 959,138 - -0.2 959,158 + +2.1 959,163 - -0.1 959,232 - yjbJ NOLOHH_05210 0.34 +0.5 959,268 + yjbJ NOLOHH_05210 0.51 +0.1 959,286 + yjbJ NOLOHH_05210 0.60 -0.3
Or see this region's nucleotide sequence