Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05180
Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bas67 |
---|---|---|---|---|---|
remove | |||||
951,865 | + | alr | NOLOHH_05175 | 0.14 | -0.8 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | +0.7 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | -0.0 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | -0.5 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | +0.1 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | -0.4 |
951,865 | + | alr | NOLOHH_05175 | 0.14 | +0.3 |
951,883 | - | alr | NOLOHH_05175 | 0.16 | -0.3 |
952,053 | + | alr | NOLOHH_05175 | 0.31 | +0.9 |
952,054 | - | alr | NOLOHH_05175 | 0.31 | +0.1 |
952,084 | + | alr | NOLOHH_05175 | 0.34 | +0.9 |
952,257 | + | alr | NOLOHH_05175 | 0.50 | +0.1 |
952,260 | + | alr | NOLOHH_05175 | 0.50 | -0.6 |
952,261 | - | alr | NOLOHH_05175 | 0.51 | -0.1 |
952,261 | - | alr | NOLOHH_05175 | 0.51 | -0.3 |
952,400 | - | alr | NOLOHH_05175 | 0.63 | -0.1 |
952,417 | - | alr | NOLOHH_05175 | 0.65 | -0.2 |
952,570 | + | alr | NOLOHH_05175 | 0.79 | +0.5 |
952,571 | - | alr | NOLOHH_05175 | 0.79 | +0.5 |
952,682 | + | alr | NOLOHH_05175 | 0.90 | -0.2 |
952,829 | + | -1.7 | |||
952,830 | - | +1.1 | |||
952,849 | - | -0.1 | |||
952,875 | + | +0.9 | |||
952,875 | + | -1.8 | |||
952,875 | + | -0.0 | |||
952,875 | + | -1.1 | |||
952,876 | - | -0.4 | |||
952,876 | - | -0.8 | |||
952,876 | - | +0.8 | |||
952,876 | - | -1.4 | |||
952,876 | - | -0.3 | |||
952,876 | - | -0.4 | |||
954,304 | - | -0.3 | |||
954,304 | - | +2.8 | |||
954,309 | - | -1.5 | |||
954,309 | - | +2.5 | |||
954,329 | - | -0.5 | |||
954,329 | - | +1.1 | |||
954,388 | + | -0.5 | |||
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.9 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.7 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | +0.2 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.6 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -1.6 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | +0.3 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | +0.4 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -1.5 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.1 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -1.3 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.8 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | +0.5 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -1.2 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | +0.0 |
954,480 | + | qorA | NOLOHH_05185 | 0.14 | -0.3 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.6 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | +0.2 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.8 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | +0.3 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.4 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.0 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | +0.4 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.2 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.5 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | +0.1 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | +0.1 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.1 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.3 |
954,481 | - | qorA | NOLOHH_05185 | 0.14 | -0.4 |
954,526 | + | qorA | NOLOHH_05185 | 0.18 | -1.3 |
954,527 | - | qorA | NOLOHH_05185 | 0.18 | +0.8 |
954,527 | - | qorA | NOLOHH_05185 | 0.18 | +0.7 |
954,530 | + | qorA | NOLOHH_05185 | 0.19 | -0.5 |
954,571 | + | qorA | NOLOHH_05185 | 0.23 | -0.3 |
954,571 | + | qorA | NOLOHH_05185 | 0.23 | -0.2 |
954,571 | + | qorA | NOLOHH_05185 | 0.23 | +0.5 |
954,572 | - | qorA | NOLOHH_05185 | 0.23 | -0.9 |
954,572 | - | qorA | NOLOHH_05185 | 0.23 | +0.5 |
954,572 | - | qorA | NOLOHH_05185 | 0.23 | +0.4 |
954,578 | + | qorA | NOLOHH_05185 | 0.24 | +0.3 |
954,579 | - | qorA | NOLOHH_05185 | 0.24 | +0.1 |
954,581 | + | qorA | NOLOHH_05185 | 0.24 | +1.0 |
954,582 | - | qorA | NOLOHH_05185 | 0.24 | -0.1 |
954,598 | + | qorA | NOLOHH_05185 | 0.26 | +0.1 |
954,603 | + | qorA | NOLOHH_05185 | 0.26 | +1.5 |
954,604 | - | qorA | NOLOHH_05185 | 0.26 | -0.2 |
954,604 | - | qorA | NOLOHH_05185 | 0.26 | -1.0 |
954,628 | - | qorA | NOLOHH_05185 | 0.29 | +0.2 |
954,642 | - | qorA | NOLOHH_05185 | 0.30 | +1.5 |
954,647 | + | qorA | NOLOHH_05185 | 0.31 | +0.2 |
954,647 | + | qorA | NOLOHH_05185 | 0.31 | +0.5 |
954,648 | - | qorA | NOLOHH_05185 | 0.31 | -0.5 |
954,648 | - | qorA | NOLOHH_05185 | 0.31 | -0.0 |
954,732 | + | qorA | NOLOHH_05185 | 0.39 | +0.1 |
954,732 | + | qorA | NOLOHH_05185 | 0.39 | +0.5 |
954,751 | - | qorA | NOLOHH_05185 | 0.41 | -0.1 |
954,808 | + | qorA | NOLOHH_05185 | 0.47 | +0.5 |
954,809 | - | qorA | NOLOHH_05185 | 0.47 | -0.5 |
954,859 | + | qorA | NOLOHH_05185 | 0.52 | -0.4 |
954,890 | - | qorA | NOLOHH_05185 | 0.55 | -0.7 |
954,912 | - | qorA | NOLOHH_05185 | 0.58 | +0.5 |
954,914 | + | qorA | NOLOHH_05185 | 0.58 | +0.8 |
954,914 | + | qorA | NOLOHH_05185 | 0.58 | -0.2 |
954,914 | + | qorA | NOLOHH_05185 | 0.58 | -0.4 |
954,915 | - | qorA | NOLOHH_05185 | 0.58 | +0.1 |
954,915 | - | qorA | NOLOHH_05185 | 0.58 | +3.5 |
954,915 | - | qorA | NOLOHH_05185 | 0.58 | +0.6 |
954,915 | - | qorA | NOLOHH_05185 | 0.58 | -1.1 |
954,918 | + | qorA | NOLOHH_05185 | 0.58 | -0.4 |
954,984 | + | qorA | NOLOHH_05185 | 0.65 | -0.4 |
954,984 | + | qorA | NOLOHH_05185 | 0.65 | +1.5 |
955,045 | + | qorA | NOLOHH_05185 | 0.71 | -1.3 |
955,045 | + | qorA | NOLOHH_05185 | 0.71 | +0.7 |
955,045 | + | qorA | NOLOHH_05185 | 0.71 | -0.3 |
955,122 | + | qorA | NOLOHH_05185 | 0.79 | -0.1 |
955,122 | + | qorA | NOLOHH_05185 | 0.79 | -0.7 |
955,122 | + | qorA | NOLOHH_05185 | 0.79 | +0.5 |
955,122 | + | qorA | NOLOHH_05185 | 0.79 | +0.1 |
955,122 | + | qorA | NOLOHH_05185 | 0.79 | -0.5 |
955,123 | - | qorA | NOLOHH_05185 | 0.79 | -1.8 |
955,149 | + | qorA | NOLOHH_05185 | 0.82 | -0.8 |
955,149 | + | qorA | NOLOHH_05185 | 0.82 | +2.3 |
955,149 | + | qorA | NOLOHH_05185 | 0.82 | -1.2 |
955,149 | + | qorA | NOLOHH_05185 | 0.82 | +0.2 |
955,149 | + | qorA | NOLOHH_05185 | 0.82 | -0.3 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | -0.1 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | +0.6 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | -0.1 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | +0.5 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | -0.2 |
955,150 | - | qorA | NOLOHH_05185 | 0.82 | +0.1 |
955,151 | + | qorA | NOLOHH_05185 | 0.82 | +0.1 |
955,151 | + | qorA | NOLOHH_05185 | 0.82 | +1.1 |
955,151 | + | qorA | NOLOHH_05185 | 0.82 | +0.5 |
955,151 | + | qorA | NOLOHH_05185 | 0.82 | +0.3 |
955,151 | + | qorA | NOLOHH_05185 | 0.82 | +0.2 |
955,220 | + | qorA | NOLOHH_05185 | 0.89 | +1.9 |
Or see this region's nucleotide sequence