Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05180

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalr and dnaB are separated by 52 nucleotidesdnaB and qorA are separated by 82 nucleotides NOLOHH_05175: alr - alanine racemase, at 951,715 to 952,794 alr NOLOHH_05180: dnaB - replicative DNA helicase, at 952,847 to 954,262 dnaB NOLOHH_05185: qorA - Quinone oxidoreductase 1, at 954,345 to 955,328 qorA Position (kb) 952 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2 3at 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.865 kb on + strand, within alrat 951.883 kb on - strand, within alrat 952.053 kb on + strand, within alrat 952.054 kb on - strand, within alrat 952.084 kb on + strand, within alrat 952.257 kb on + strand, within alrat 952.260 kb on + strand, within alrat 952.261 kb on - strand, within alrat 952.261 kb on - strand, within alrat 952.400 kb on - strand, within alrat 952.417 kb on - strand, within alrat 952.570 kb on + strand, within alrat 952.571 kb on - strand, within alrat 952.682 kb on + strand, within alrat 952.829 kb on + strandat 952.830 kb on - strandat 952.849 kb on - strandat 952.875 kb on + strandat 952.875 kb on + strandat 952.875 kb on + strandat 952.875 kb on + strandat 952.876 kb on - strandat 952.876 kb on - strandat 952.876 kb on - strandat 952.876 kb on - strandat 952.876 kb on - strandat 952.876 kb on - strandat 954.304 kb on - strandat 954.304 kb on - strandat 954.309 kb on - strandat 954.309 kb on - strandat 954.329 kb on - strandat 954.329 kb on - strandat 954.388 kb on + strandat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.480 kb on + strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.481 kb on - strand, within qorAat 954.526 kb on + strand, within qorAat 954.527 kb on - strand, within qorAat 954.527 kb on - strand, within qorAat 954.530 kb on + strand, within qorAat 954.571 kb on + strand, within qorAat 954.571 kb on + strand, within qorAat 954.571 kb on + strand, within qorAat 954.572 kb on - strand, within qorAat 954.572 kb on - strand, within qorAat 954.572 kb on - strand, within qorAat 954.578 kb on + strand, within qorAat 954.579 kb on - strand, within qorAat 954.581 kb on + strand, within qorAat 954.582 kb on - strand, within qorAat 954.598 kb on + strand, within qorAat 954.603 kb on + strand, within qorAat 954.604 kb on - strand, within qorAat 954.604 kb on - strand, within qorAat 954.628 kb on - strand, within qorAat 954.642 kb on - strand, within qorAat 954.647 kb on + strand, within qorAat 954.647 kb on + strand, within qorAat 954.648 kb on - strand, within qorAat 954.648 kb on - strand, within qorAat 954.732 kb on + strand, within qorAat 954.732 kb on + strand, within qorAat 954.751 kb on - strand, within qorAat 954.808 kb on + strand, within qorAat 954.809 kb on - strand, within qorAat 954.859 kb on + strand, within qorAat 954.890 kb on - strand, within qorAat 954.912 kb on - strand, within qorAat 954.914 kb on + strand, within qorAat 954.914 kb on + strand, within qorAat 954.914 kb on + strand, within qorAat 954.915 kb on - strand, within qorAat 954.915 kb on - strand, within qorAat 954.915 kb on - strand, within qorAat 954.915 kb on - strand, within qorAat 954.918 kb on + strand, within qorAat 954.984 kb on + strand, within qorAat 954.984 kb on + strand, within qorAat 955.045 kb on + strand, within qorAat 955.045 kb on + strand, within qorAat 955.045 kb on + strand, within qorAat 955.122 kb on + strand, within qorAat 955.122 kb on + strand, within qorAat 955.122 kb on + strand, within qorAat 955.122 kb on + strand, within qorAat 955.122 kb on + strand, within qorAat 955.123 kb on - strand, within qorAat 955.149 kb on + strand, within qorAat 955.149 kb on + strand, within qorAat 955.149 kb on + strand, within qorAat 955.149 kb on + strand, within qorAat 955.149 kb on + strand, within qorAat 955.150 kb on - strand, within qorAat 955.150 kb on - strand, within qorAat 955.150 kb on - strand, within qorAat 955.150 kb on - strand, within qorAat 955.150 kb on - strand, within qorAat 955.150 kb on - strand, within qorAat 955.151 kb on + strand, within qorAat 955.151 kb on + strand, within qorAat 955.151 kb on + strand, within qorAat 955.151 kb on + strand, within qorAat 955.151 kb on + strand, within qorAat 955.220 kb on + strand, within qorA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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951,865 + alr NOLOHH_05175 0.14 -0.8
951,865 + alr NOLOHH_05175 0.14 +0.7
951,865 + alr NOLOHH_05175 0.14 -0.0
951,865 + alr NOLOHH_05175 0.14 -0.5
951,865 + alr NOLOHH_05175 0.14 +0.1
951,865 + alr NOLOHH_05175 0.14 -0.4
951,865 + alr NOLOHH_05175 0.14 +0.3
951,883 - alr NOLOHH_05175 0.16 -0.3
952,053 + alr NOLOHH_05175 0.31 +0.9
952,054 - alr NOLOHH_05175 0.31 +0.1
952,084 + alr NOLOHH_05175 0.34 +0.9
952,257 + alr NOLOHH_05175 0.50 +0.1
952,260 + alr NOLOHH_05175 0.50 -0.6
952,261 - alr NOLOHH_05175 0.51 -0.1
952,261 - alr NOLOHH_05175 0.51 -0.3
952,400 - alr NOLOHH_05175 0.63 -0.1
952,417 - alr NOLOHH_05175 0.65 -0.2
952,570 + alr NOLOHH_05175 0.79 +0.5
952,571 - alr NOLOHH_05175 0.79 +0.5
952,682 + alr NOLOHH_05175 0.90 -0.2
952,829 + -1.7
952,830 - +1.1
952,849 - -0.1
952,875 + +0.9
952,875 + -1.8
952,875 + -0.0
952,875 + -1.1
952,876 - -0.4
952,876 - -0.8
952,876 - +0.8
952,876 - -1.4
952,876 - -0.3
952,876 - -0.4
954,304 - -0.3
954,304 - +2.8
954,309 - -1.5
954,309 - +2.5
954,329 - -0.5
954,329 - +1.1
954,388 + -0.5
954,480 + qorA NOLOHH_05185 0.14 -0.9
954,480 + qorA NOLOHH_05185 0.14 -0.7
954,480 + qorA NOLOHH_05185 0.14 +0.2
954,480 + qorA NOLOHH_05185 0.14 -0.6
954,480 + qorA NOLOHH_05185 0.14 -1.6
954,480 + qorA NOLOHH_05185 0.14 +0.3
954,480 + qorA NOLOHH_05185 0.14 +0.4
954,480 + qorA NOLOHH_05185 0.14 -1.5
954,480 + qorA NOLOHH_05185 0.14 -0.1
954,480 + qorA NOLOHH_05185 0.14 -1.3
954,480 + qorA NOLOHH_05185 0.14 -0.8
954,480 + qorA NOLOHH_05185 0.14 +0.5
954,480 + qorA NOLOHH_05185 0.14 -1.2
954,480 + qorA NOLOHH_05185 0.14 +0.0
954,480 + qorA NOLOHH_05185 0.14 -0.3
954,481 - qorA NOLOHH_05185 0.14 -0.6
954,481 - qorA NOLOHH_05185 0.14 +0.2
954,481 - qorA NOLOHH_05185 0.14 -0.8
954,481 - qorA NOLOHH_05185 0.14 +0.3
954,481 - qorA NOLOHH_05185 0.14 -0.4
954,481 - qorA NOLOHH_05185 0.14 -0.0
954,481 - qorA NOLOHH_05185 0.14 +0.4
954,481 - qorA NOLOHH_05185 0.14 -0.2
954,481 - qorA NOLOHH_05185 0.14 -0.5
954,481 - qorA NOLOHH_05185 0.14 +0.1
954,481 - qorA NOLOHH_05185 0.14 +0.1
954,481 - qorA NOLOHH_05185 0.14 -0.1
954,481 - qorA NOLOHH_05185 0.14 -0.3
954,481 - qorA NOLOHH_05185 0.14 -0.4
954,526 + qorA NOLOHH_05185 0.18 -1.3
954,527 - qorA NOLOHH_05185 0.18 +0.8
954,527 - qorA NOLOHH_05185 0.18 +0.7
954,530 + qorA NOLOHH_05185 0.19 -0.5
954,571 + qorA NOLOHH_05185 0.23 -0.3
954,571 + qorA NOLOHH_05185 0.23 -0.2
954,571 + qorA NOLOHH_05185 0.23 +0.5
954,572 - qorA NOLOHH_05185 0.23 -0.9
954,572 - qorA NOLOHH_05185 0.23 +0.5
954,572 - qorA NOLOHH_05185 0.23 +0.4
954,578 + qorA NOLOHH_05185 0.24 +0.3
954,579 - qorA NOLOHH_05185 0.24 +0.1
954,581 + qorA NOLOHH_05185 0.24 +1.0
954,582 - qorA NOLOHH_05185 0.24 -0.1
954,598 + qorA NOLOHH_05185 0.26 +0.1
954,603 + qorA NOLOHH_05185 0.26 +1.5
954,604 - qorA NOLOHH_05185 0.26 -0.2
954,604 - qorA NOLOHH_05185 0.26 -1.0
954,628 - qorA NOLOHH_05185 0.29 +0.2
954,642 - qorA NOLOHH_05185 0.30 +1.5
954,647 + qorA NOLOHH_05185 0.31 +0.2
954,647 + qorA NOLOHH_05185 0.31 +0.5
954,648 - qorA NOLOHH_05185 0.31 -0.5
954,648 - qorA NOLOHH_05185 0.31 -0.0
954,732 + qorA NOLOHH_05185 0.39 +0.1
954,732 + qorA NOLOHH_05185 0.39 +0.5
954,751 - qorA NOLOHH_05185 0.41 -0.1
954,808 + qorA NOLOHH_05185 0.47 +0.5
954,809 - qorA NOLOHH_05185 0.47 -0.5
954,859 + qorA NOLOHH_05185 0.52 -0.4
954,890 - qorA NOLOHH_05185 0.55 -0.7
954,912 - qorA NOLOHH_05185 0.58 +0.5
954,914 + qorA NOLOHH_05185 0.58 +0.8
954,914 + qorA NOLOHH_05185 0.58 -0.2
954,914 + qorA NOLOHH_05185 0.58 -0.4
954,915 - qorA NOLOHH_05185 0.58 +0.1
954,915 - qorA NOLOHH_05185 0.58 +3.5
954,915 - qorA NOLOHH_05185 0.58 +0.6
954,915 - qorA NOLOHH_05185 0.58 -1.1
954,918 + qorA NOLOHH_05185 0.58 -0.4
954,984 + qorA NOLOHH_05185 0.65 -0.4
954,984 + qorA NOLOHH_05185 0.65 +1.5
955,045 + qorA NOLOHH_05185 0.71 -1.3
955,045 + qorA NOLOHH_05185 0.71 +0.7
955,045 + qorA NOLOHH_05185 0.71 -0.3
955,122 + qorA NOLOHH_05185 0.79 -0.1
955,122 + qorA NOLOHH_05185 0.79 -0.7
955,122 + qorA NOLOHH_05185 0.79 +0.5
955,122 + qorA NOLOHH_05185 0.79 +0.1
955,122 + qorA NOLOHH_05185 0.79 -0.5
955,123 - qorA NOLOHH_05185 0.79 -1.8
955,149 + qorA NOLOHH_05185 0.82 -0.8
955,149 + qorA NOLOHH_05185 0.82 +2.3
955,149 + qorA NOLOHH_05185 0.82 -1.2
955,149 + qorA NOLOHH_05185 0.82 +0.2
955,149 + qorA NOLOHH_05185 0.82 -0.3
955,150 - qorA NOLOHH_05185 0.82 -0.1
955,150 - qorA NOLOHH_05185 0.82 +0.6
955,150 - qorA NOLOHH_05185 0.82 -0.1
955,150 - qorA NOLOHH_05185 0.82 +0.5
955,150 - qorA NOLOHH_05185 0.82 -0.2
955,150 - qorA NOLOHH_05185 0.82 +0.1
955,151 + qorA NOLOHH_05185 0.82 +0.1
955,151 + qorA NOLOHH_05185 0.82 +1.1
955,151 + qorA NOLOHH_05185 0.82 +0.5
955,151 + qorA NOLOHH_05185 0.82 +0.3
955,151 + qorA NOLOHH_05185 0.82 +0.2
955,220 + qorA NOLOHH_05185 0.89 +1.9

Or see this region's nucleotide sequence