Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfA and ytcB are separated by 96 nucleotides ytcB and acs are separated by 239 nucleotides
NOLOHH_05070: nrfA - ammonia-forming nitrite reductase cytochrome c552 subunit, at 929,355 to 930,791
nrfA
NOLOHH_05075: ytcB - Protein YtcB, at 930,888 to 930,944
ytcB
NOLOHH_05080: acs - acetate--CoA ligase, at 931,184 to 933,142
acs
Position (kb) 930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 929.889 kb on - strand, within nrfA at 929.889 kb on - strand, within nrfA at 929.889 kb on - strand, within nrfA at 929.900 kb on - strand, within nrfA at 929.933 kb on + strand, within nrfA at 929.933 kb on + strand, within nrfA at 929.992 kb on + strand, within nrfA at 929.993 kb on - strand, within nrfA at 929.993 kb on - strand, within nrfA at 929.993 kb on - strand, within nrfA at 929.993 kb on - strand, within nrfA at 930.038 kb on + strand, within nrfA at 930.038 kb on + strand, within nrfA at 930.039 kb on - strand, within nrfA at 930.039 kb on - strand, within nrfA at 930.039 kb on - strand, within nrfA at 930.039 kb on - strand, within nrfA at 930.067 kb on + strand, within nrfA at 930.068 kb on - strand, within nrfA at 930.070 kb on + strand, within nrfA at 930.070 kb on + strand, within nrfA at 930.070 kb on + strand, within nrfA at 930.071 kb on - strand, within nrfA at 930.142 kb on + strand, within nrfA at 930.143 kb on - strand, within nrfA at 930.143 kb on - strand, within nrfA at 930.145 kb on + strand, within nrfA at 930.146 kb on - strand, within nrfA at 930.146 kb on - strand, within nrfA at 930.300 kb on - strand, within nrfA at 930.301 kb on - strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.318 kb on + strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.319 kb on - strand, within nrfA at 930.416 kb on + strand, within nrfA at 930.416 kb on + strand, within nrfA at 930.416 kb on + strand, within nrfA at 930.416 kb on + strand, within nrfA at 930.529 kb on + strand, within nrfA at 930.530 kb on - strand, within nrfA at 930.635 kb on - strand, within nrfA at 930.635 kb on - strand, within nrfA at 930.635 kb on - strand, within nrfA at 930.635 kb on - strand, within nrfA at 930.836 kb on - strand at 930.863 kb on + strand at 930.863 kb on + strand at 930.863 kb on + strand at 930.864 kb on - strand at 930.889 kb on + strand at 930.889 kb on + strand at 930.890 kb on - strand at 930.896 kb on - strand, within ytcB at 930.937 kb on - strand, within ytcB at 931.065 kb on + strand at 931.065 kb on + strand at 931.079 kb on + strand at 931.080 kb on - strand at 931.105 kb on + strand at 931.253 kb on + strand at 931.285 kb on - strand at 931.285 kb on - strand at 931.372 kb on + strand at 931.384 kb on + strand, within acs at 931.384 kb on + strand, within acs at 931.385 kb on - strand, within acs at 931.385 kb on - strand, within acs at 931.392 kb on - strand, within acs at 931.504 kb on + strand, within acs at 931.505 kb on - strand, within acs at 931.505 kb on - strand, within acs at 931.505 kb on - strand, within acs at 931.511 kb on + strand, within acs at 931.511 kb on + strand, within acs at 931.512 kb on - strand, within acs at 931.512 kb on - strand, within acs at 931.512 kb on - strand, within acs at 931.513 kb on + strand, within acs at 931.513 kb on + strand, within acs at 931.514 kb on - strand, within acs at 931.595 kb on + strand, within acs at 931.595 kb on + strand, within acs at 931.595 kb on + strand, within acs at 931.595 kb on + strand, within acs at 931.596 kb on - strand, within acs at 931.596 kb on - strand, within acs at 931.596 kb on - strand, within acs at 931.597 kb on + strand, within acs at 931.598 kb on - strand, within acs at 931.709 kb on - strand, within acs at 931.768 kb on + strand, within acs at 931.768 kb on + strand, within acs at 931.769 kb on - strand, within acs at 931.840 kb on - strand, within acs at 931.850 kb on - strand, within acs
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 929,889 - nrfA NOLOHH_05070 0.37 -2.2 929,889 - nrfA NOLOHH_05070 0.37 +0.9 929,889 - nrfA NOLOHH_05070 0.37 +0.6 929,900 - nrfA NOLOHH_05070 0.38 +1.1 929,933 + nrfA NOLOHH_05070 0.40 +0.5 929,933 + nrfA NOLOHH_05070 0.40 -0.8 929,992 + nrfA NOLOHH_05070 0.44 +0.5 929,993 - nrfA NOLOHH_05070 0.44 -1.0 929,993 - nrfA NOLOHH_05070 0.44 +0.7 929,993 - nrfA NOLOHH_05070 0.44 +0.4 929,993 - nrfA NOLOHH_05070 0.44 +0.5 930,038 + nrfA NOLOHH_05070 0.48 +0.9 930,038 + nrfA NOLOHH_05070 0.48 -1.3 930,039 - nrfA NOLOHH_05070 0.48 -0.8 930,039 - nrfA NOLOHH_05070 0.48 +0.1 930,039 - nrfA NOLOHH_05070 0.48 -0.8 930,039 - nrfA NOLOHH_05070 0.48 -0.5 930,067 + nrfA NOLOHH_05070 0.50 +0.6 930,068 - nrfA NOLOHH_05070 0.50 -0.8 930,070 + nrfA NOLOHH_05070 0.50 -0.2 930,070 + nrfA NOLOHH_05070 0.50 -0.5 930,070 + nrfA NOLOHH_05070 0.50 +0.5 930,071 - nrfA NOLOHH_05070 0.50 -0.8 930,142 + nrfA NOLOHH_05070 0.55 +2.1 930,143 - nrfA NOLOHH_05070 0.55 -1.1 930,143 - nrfA NOLOHH_05070 0.55 +0.3 930,145 + nrfA NOLOHH_05070 0.55 -0.4 930,146 - nrfA NOLOHH_05070 0.55 +0.7 930,146 - nrfA NOLOHH_05070 0.55 -0.3 930,300 - nrfA NOLOHH_05070 0.66 -0.2 930,301 - nrfA NOLOHH_05070 0.66 -0.9 930,318 + nrfA NOLOHH_05070 0.67 -0.5 930,318 + nrfA NOLOHH_05070 0.67 +0.7 930,318 + nrfA NOLOHH_05070 0.67 +0.1 930,318 + nrfA NOLOHH_05070 0.67 -0.2 930,318 + nrfA NOLOHH_05070 0.67 +0.5 930,318 + nrfA NOLOHH_05070 0.67 +0.9 930,318 + nrfA NOLOHH_05070 0.67 -0.1 930,318 + nrfA NOLOHH_05070 0.67 +0.9 930,319 - nrfA NOLOHH_05070 0.67 -0.9 930,319 - nrfA NOLOHH_05070 0.67 -0.3 930,319 - nrfA NOLOHH_05070 0.67 -0.4 930,319 - nrfA NOLOHH_05070 0.67 +0.5 930,319 - nrfA NOLOHH_05070 0.67 +1.0 930,319 - nrfA NOLOHH_05070 0.67 -0.1 930,416 + nrfA NOLOHH_05070 0.74 -0.3 930,416 + nrfA NOLOHH_05070 0.74 +1.1 930,416 + nrfA NOLOHH_05070 0.74 +0.2 930,416 + nrfA NOLOHH_05070 0.74 -1.1 930,529 + nrfA NOLOHH_05070 0.82 -1.1 930,530 - nrfA NOLOHH_05070 0.82 -1.0 930,635 - nrfA NOLOHH_05070 0.89 -1.1 930,635 - nrfA NOLOHH_05070 0.89 +0.2 930,635 - nrfA NOLOHH_05070 0.89 +1.5 930,635 - nrfA NOLOHH_05070 0.89 +0.3 930,836 - +0.1 930,863 + +0.5 930,863 + +1.2 930,863 + -0.1 930,864 - +1.1 930,889 + -0.4 930,889 + -0.5 930,890 - -0.0 930,896 - ytcB NOLOHH_05075 0.14 -0.3 930,937 - ytcB NOLOHH_05075 0.86 -0.4 931,065 + -0.3 931,065 + +0.1 931,079 + -0.5 931,080 - +0.4 931,105 + -2.0 931,253 + -0.5 931,285 - +0.7 931,285 - +0.1 931,372 + -0.4 931,384 + acs NOLOHH_05080 0.10 -0.4 931,384 + acs NOLOHH_05080 0.10 -0.4 931,385 - acs NOLOHH_05080 0.10 +0.6 931,385 - acs NOLOHH_05080 0.10 -0.5 931,392 - acs NOLOHH_05080 0.11 -0.1 931,504 + acs NOLOHH_05080 0.16 +0.4 931,505 - acs NOLOHH_05080 0.16 -0.0 931,505 - acs NOLOHH_05080 0.16 +2.1 931,505 - acs NOLOHH_05080 0.16 -0.4 931,511 + acs NOLOHH_05080 0.17 +1.0 931,511 + acs NOLOHH_05080 0.17 +0.3 931,512 - acs NOLOHH_05080 0.17 -0.1 931,512 - acs NOLOHH_05080 0.17 -1.5 931,512 - acs NOLOHH_05080 0.17 -0.2 931,513 + acs NOLOHH_05080 0.17 +0.1 931,513 + acs NOLOHH_05080 0.17 -0.0 931,514 - acs NOLOHH_05080 0.17 -1.1 931,595 + acs NOLOHH_05080 0.21 +0.3 931,595 + acs NOLOHH_05080 0.21 -1.0 931,595 + acs NOLOHH_05080 0.21 +0.5 931,595 + acs NOLOHH_05080 0.21 -0.4 931,596 - acs NOLOHH_05080 0.21 +0.5 931,596 - acs NOLOHH_05080 0.21 -2.1 931,596 - acs NOLOHH_05080 0.21 -1.6 931,597 + acs NOLOHH_05080 0.21 +0.1 931,598 - acs NOLOHH_05080 0.21 +1.1 931,709 - acs NOLOHH_05080 0.27 -0.1 931,768 + acs NOLOHH_05080 0.30 +0.7 931,768 + acs NOLOHH_05080 0.30 +0.1 931,769 - acs NOLOHH_05080 0.30 +0.2 931,840 - acs NOLOHH_05080 0.33 -0.8 931,850 - acs NOLOHH_05080 0.34 +0.9
Or see this region's nucleotide sequence