Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crfC and yjdM are separated by 401 nucleotides yjdM and yjdN are separated by 159 nucleotides yjdN and phnC are separated by 132 nucleotides
NOLOHH_04865: crfC - clamp-binding protein CrfC, at 890,260 to 892,488
crfC
NOLOHH_04870: yjdM - Protein YjdM, at 892,890 to 893,225
yjdM
NOLOHH_04880: yjdN - VOC family metalloprotein YjdN, at 893,385 to 893,828
yjdN
NOLOHH_04885: phnC - phosphonate ABC transporter ATP-binding protein, at 893,961 to 894,749
phnC
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 891.919 kb on + strand, within crfC at 891.920 kb on - strand, within crfC at 891.951 kb on + strand, within crfC at 892.027 kb on - strand, within crfC at 892.056 kb on + strand, within crfC at 892.056 kb on + strand, within crfC at 892.085 kb on - strand, within crfC at 892.085 kb on - strand, within crfC at 892.085 kb on - strand, within crfC at 892.165 kb on - strand, within crfC at 892.195 kb on - strand, within crfC at 892.200 kb on + strand, within crfC at 892.311 kb on + strand at 892.338 kb on + strand at 892.342 kb on - strand at 892.412 kb on - strand at 892.438 kb on + strand at 892.438 kb on + strand at 892.463 kb on - strand at 892.484 kb on + strand at 892.485 kb on - strand at 892.519 kb on - strand at 892.714 kb on + strand at 892.715 kb on - strand at 892.719 kb on - strand at 892.817 kb on + strand at 892.817 kb on + strand at 892.818 kb on - strand at 892.819 kb on + strand at 892.819 kb on + strand at 892.820 kb on - strand at 892.898 kb on - strand at 892.926 kb on + strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 893.093 kb on + strand, within yjdM at 893.093 kb on + strand, within yjdM at 893.094 kb on - strand, within yjdM at 893.156 kb on + strand, within yjdM at 893.230 kb on - strand at 893.336 kb on + strand at 893.348 kb on + strand at 893.349 kb on - strand at 893.355 kb on - strand at 893.400 kb on + strand at 893.439 kb on + strand, within yjdN at 893.439 kb on + strand, within yjdN at 893.440 kb on - strand, within yjdN at 893.440 kb on - strand, within yjdN at 893.442 kb on + strand, within yjdN at 893.442 kb on + strand, within yjdN at 893.450 kb on + strand, within yjdN at 893.450 kb on + strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.473 kb on - strand, within yjdN at 893.635 kb on - strand, within yjdN at 893.645 kb on + strand, within yjdN at 893.798 kb on + strand at 893.798 kb on + strand at 893.798 kb on + strand at 893.799 kb on - strand at 893.799 kb on - strand at 893.799 kb on - strand at 893.826 kb on + strand at 893.827 kb on - strand at 894.100 kb on + strand, within phnC at 894.100 kb on + strand, within phnC at 894.101 kb on - strand, within phnC at 894.101 kb on - strand, within phnC at 894.132 kb on - strand, within phnC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 891,919 + crfC NOLOHH_04865 0.74 -1.2 891,920 - crfC NOLOHH_04865 0.74 +0.0 891,951 + crfC NOLOHH_04865 0.76 +0.7 892,027 - crfC NOLOHH_04865 0.79 -0.5 892,056 + crfC NOLOHH_04865 0.81 -0.9 892,056 + crfC NOLOHH_04865 0.81 -2.0 892,085 - crfC NOLOHH_04865 0.82 +0.3 892,085 - crfC NOLOHH_04865 0.82 +0.1 892,085 - crfC NOLOHH_04865 0.82 -1.1 892,165 - crfC NOLOHH_04865 0.85 -0.3 892,195 - crfC NOLOHH_04865 0.87 -0.5 892,200 + crfC NOLOHH_04865 0.87 -0.1 892,311 + +1.5 892,338 + -1.5 892,342 - -0.4 892,412 - -0.1 892,438 + +0.2 892,438 + -1.3 892,463 - -0.7 892,484 + +0.0 892,485 - +0.2 892,519 - -0.3 892,714 + +0.7 892,715 - +0.2 892,719 - +1.6 892,817 + +0.5 892,817 + -1.1 892,818 - +0.2 892,819 + -0.3 892,819 + +0.0 892,820 - -1.5 892,898 - +2.8 892,926 + yjdM NOLOHH_04870 0.11 +0.2 892,927 - yjdM NOLOHH_04870 0.11 -0.5 892,927 - yjdM NOLOHH_04870 0.11 -1.0 892,927 - yjdM NOLOHH_04870 0.11 +0.3 892,932 + yjdM NOLOHH_04870 0.12 +0.5 892,932 + yjdM NOLOHH_04870 0.12 +0.5 892,932 + yjdM NOLOHH_04870 0.12 -0.2 892,932 + yjdM NOLOHH_04870 0.12 -0.5 892,933 - yjdM NOLOHH_04870 0.13 +0.2 892,933 - yjdM NOLOHH_04870 0.13 -1.9 892,933 - yjdM NOLOHH_04870 0.13 -0.2 892,950 + yjdM NOLOHH_04870 0.18 -0.1 892,950 + yjdM NOLOHH_04870 0.18 -0.3 892,950 + yjdM NOLOHH_04870 0.18 -0.1 892,950 + yjdM NOLOHH_04870 0.18 +0.5 892,950 + yjdM NOLOHH_04870 0.18 -0.3 892,950 + yjdM NOLOHH_04870 0.18 +0.8 892,951 - yjdM NOLOHH_04870 0.18 +0.0 892,951 - yjdM NOLOHH_04870 0.18 -0.5 892,951 - yjdM NOLOHH_04870 0.18 -1.1 892,951 - yjdM NOLOHH_04870 0.18 -0.5 892,951 - yjdM NOLOHH_04870 0.18 +0.1 893,093 + yjdM NOLOHH_04870 0.60 +1.0 893,093 + yjdM NOLOHH_04870 0.60 +0.3 893,094 - yjdM NOLOHH_04870 0.61 -0.7 893,156 + yjdM NOLOHH_04870 0.79 +0.9 893,230 - -0.4 893,336 + -0.3 893,348 + +0.8 893,349 - -1.1 893,355 - +0.2 893,400 + +0.5 893,439 + yjdN NOLOHH_04880 0.12 -0.5 893,439 + yjdN NOLOHH_04880 0.12 +1.0 893,440 - yjdN NOLOHH_04880 0.12 -0.5 893,440 - yjdN NOLOHH_04880 0.12 +0.1 893,442 + yjdN NOLOHH_04880 0.13 -0.9 893,442 + yjdN NOLOHH_04880 0.13 +1.7 893,450 + yjdN NOLOHH_04880 0.15 -0.9 893,450 + yjdN NOLOHH_04880 0.15 -0.2 893,451 - yjdN NOLOHH_04880 0.15 +0.0 893,451 - yjdN NOLOHH_04880 0.15 -0.3 893,451 - yjdN NOLOHH_04880 0.15 -0.3 893,473 - yjdN NOLOHH_04880 0.20 +0.0 893,635 - yjdN NOLOHH_04880 0.56 +0.8 893,645 + yjdN NOLOHH_04880 0.59 +1.8 893,798 + +0.5 893,798 + -0.2 893,798 + -0.7 893,799 - -1.0 893,799 - -0.0 893,799 - -0.1 893,826 + +0.6 893,827 - +0.0 894,100 + phnC NOLOHH_04885 0.18 +0.0 894,100 + phnC NOLOHH_04885 0.18 +0.7 894,101 - phnC NOLOHH_04885 0.18 -0.2 894,101 - phnC NOLOHH_04885 0.18 -0.1 894,132 - phnC NOLOHH_04885 0.22 -0.7
Or see this region's nucleotide sequence