Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_04860 and crfC overlap by 4 nucleotides crfC and yjdM are separated by 401 nucleotides yjdM and yjdN are separated by 159 nucleotides
NOLOHH_04860: NOLOHH_04860 - YjcZ-like protein, at 889,385 to 890,263
_04860
NOLOHH_04865: crfC - clamp-binding protein CrfC, at 890,260 to 892,488
crfC
NOLOHH_04870: yjdM - Protein YjdM, at 892,890 to 893,225
yjdM
NOLOHH_04880: yjdN - VOC family metalloprotein YjdN, at 893,385 to 893,828
yjdN
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 889.263 kb on - strand at 889.263 kb on - strand at 889.325 kb on - strand at 889.383 kb on - strand at 889.386 kb on + strand at 889.513 kb on + strand, within NOLOHH_04860 at 889.513 kb on + strand, within NOLOHH_04860 at 889.514 kb on - strand, within NOLOHH_04860 at 889.514 kb on - strand, within NOLOHH_04860 at 889.545 kb on - strand, within NOLOHH_04860 at 889.603 kb on - strand, within NOLOHH_04860 at 889.603 kb on - strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.605 kb on + strand, within NOLOHH_04860 at 889.606 kb on - strand, within NOLOHH_04860 at 889.633 kb on + strand, within NOLOHH_04860 at 889.757 kb on - strand, within NOLOHH_04860 at 889.788 kb on + strand, within NOLOHH_04860 at 889.788 kb on + strand, within NOLOHH_04860 at 889.789 kb on - strand, within NOLOHH_04860 at 889.789 kb on - strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.905 kb on + strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 889.906 kb on - strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.075 kb on + strand, within NOLOHH_04860 at 890.076 kb on - strand, within NOLOHH_04860 at 890.076 kb on - strand, within NOLOHH_04860 at 890.466 kb on + strand at 890.467 kb on - strand at 890.531 kb on + strand, within crfC at 890.532 kb on - strand, within crfC at 890.551 kb on + strand, within crfC at 890.552 kb on - strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.573 kb on + strand, within crfC at 890.574 kb on - strand, within crfC at 890.743 kb on + strand, within crfC at 890.743 kb on + strand, within crfC at 890.743 kb on + strand, within crfC at 890.744 kb on - strand, within crfC at 890.744 kb on - strand, within crfC at 890.744 kb on - strand, within crfC at 890.829 kb on + strand, within crfC at 890.830 kb on - strand, within crfC at 890.883 kb on + strand, within crfC at 890.884 kb on - strand, within crfC at 890.884 kb on - strand, within crfC at 890.937 kb on + strand, within crfC at 890.937 kb on + strand, within crfC at 890.938 kb on - strand, within crfC at 890.984 kb on - strand, within crfC at 891.061 kb on - strand, within crfC at 891.126 kb on + strand, within crfC at 891.182 kb on + strand, within crfC at 891.183 kb on - strand, within crfC at 891.217 kb on - strand, within crfC at 891.239 kb on + strand, within crfC at 891.240 kb on - strand, within crfC at 891.240 kb on - strand, within crfC at 891.333 kb on + strand, within crfC at 891.334 kb on - strand, within crfC at 891.446 kb on - strand, within crfC at 891.473 kb on + strand, within crfC at 891.513 kb on + strand, within crfC at 891.516 kb on + strand, within crfC at 891.516 kb on + strand, within crfC at 891.516 kb on + strand, within crfC at 891.516 kb on + strand, within crfC at 891.516 kb on + strand, within crfC at 891.517 kb on - strand, within crfC at 891.576 kb on + strand, within crfC at 891.577 kb on - strand, within crfC at 891.598 kb on - strand, within crfC at 891.598 kb on - strand, within crfC at 891.598 kb on - strand, within crfC at 891.611 kb on + strand, within crfC at 891.611 kb on + strand, within crfC at 891.611 kb on + strand, within crfC at 891.611 kb on + strand, within crfC at 891.611 kb on + strand, within crfC at 891.612 kb on - strand, within crfC at 891.612 kb on - strand, within crfC at 891.612 kb on - strand, within crfC at 891.612 kb on - strand, within crfC at 891.612 kb on - strand, within crfC at 891.684 kb on + strand, within crfC at 891.685 kb on - strand, within crfC at 891.685 kb on - strand, within crfC at 891.685 kb on - strand, within crfC at 891.685 kb on - strand, within crfC at 891.685 kb on - strand, within crfC at 891.686 kb on + strand, within crfC at 891.919 kb on + strand, within crfC at 891.920 kb on - strand, within crfC at 891.951 kb on + strand, within crfC at 892.027 kb on - strand, within crfC at 892.056 kb on + strand, within crfC at 892.056 kb on + strand, within crfC at 892.085 kb on - strand, within crfC at 892.085 kb on - strand, within crfC at 892.085 kb on - strand, within crfC at 892.165 kb on - strand, within crfC at 892.195 kb on - strand, within crfC at 892.200 kb on + strand, within crfC at 892.311 kb on + strand at 892.338 kb on + strand at 892.342 kb on - strand at 892.412 kb on - strand at 892.438 kb on + strand at 892.438 kb on + strand at 892.463 kb on - strand at 892.484 kb on + strand at 892.485 kb on - strand at 892.519 kb on - strand at 892.714 kb on + strand at 892.715 kb on - strand at 892.719 kb on - strand at 892.817 kb on + strand at 892.817 kb on + strand at 892.818 kb on - strand at 892.819 kb on + strand at 892.819 kb on + strand at 892.820 kb on - strand at 892.898 kb on - strand at 892.926 kb on + strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.927 kb on - strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.932 kb on + strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.933 kb on - strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.950 kb on + strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 892.951 kb on - strand, within yjdM at 893.093 kb on + strand, within yjdM at 893.093 kb on + strand, within yjdM at 893.094 kb on - strand, within yjdM at 893.156 kb on + strand, within yjdM at 893.230 kb on - strand at 893.336 kb on + strand at 893.348 kb on + strand at 893.349 kb on - strand at 893.355 kb on - strand at 893.400 kb on + strand at 893.439 kb on + strand, within yjdN at 893.439 kb on + strand, within yjdN at 893.440 kb on - strand, within yjdN at 893.440 kb on - strand, within yjdN at 893.442 kb on + strand, within yjdN at 893.442 kb on + strand, within yjdN at 893.450 kb on + strand, within yjdN at 893.450 kb on + strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.451 kb on - strand, within yjdN at 893.473 kb on - strand, within yjdN
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 889,263 - +0.8 889,263 - +0.0 889,325 - +2.0 889,383 - +1.1 889,386 + +0.6 889,513 + NOLOHH_04860 0.15 +0.8 889,513 + NOLOHH_04860 0.15 -1.2 889,514 - NOLOHH_04860 0.15 +0.9 889,514 - NOLOHH_04860 0.15 -1.1 889,545 - NOLOHH_04860 0.18 +0.8 889,603 - NOLOHH_04860 0.25 -0.5 889,603 - NOLOHH_04860 0.25 -0.6 889,605 + NOLOHH_04860 0.25 +0.9 889,605 + NOLOHH_04860 0.25 +0.0 889,605 + NOLOHH_04860 0.25 +0.6 889,605 + NOLOHH_04860 0.25 -0.1 889,605 + NOLOHH_04860 0.25 -0.3 889,606 - NOLOHH_04860 0.25 +0.1 889,633 + NOLOHH_04860 0.28 -0.8 889,757 - NOLOHH_04860 0.42 +0.4 889,788 + NOLOHH_04860 0.46 +0.0 889,788 + NOLOHH_04860 0.46 +0.5 889,789 - NOLOHH_04860 0.46 -0.4 889,789 - NOLOHH_04860 0.46 -0.4 889,905 + NOLOHH_04860 0.59 +0.2 889,905 + NOLOHH_04860 0.59 -0.1 889,905 + NOLOHH_04860 0.59 -0.3 889,905 + NOLOHH_04860 0.59 +1.2 889,905 + NOLOHH_04860 0.59 +1.0 889,905 + NOLOHH_04860 0.59 -0.8 889,905 + NOLOHH_04860 0.59 +0.5 889,905 + NOLOHH_04860 0.59 -0.0 889,905 + NOLOHH_04860 0.59 +0.2 889,905 + NOLOHH_04860 0.59 -1.0 889,905 + NOLOHH_04860 0.59 +1.6 889,905 + NOLOHH_04860 0.59 -0.4 889,905 + NOLOHH_04860 0.59 +0.2 889,906 - NOLOHH_04860 0.59 +0.3 889,906 - NOLOHH_04860 0.59 -0.4 889,906 - NOLOHH_04860 0.59 +0.4 889,906 - NOLOHH_04860 0.59 -1.0 889,906 - NOLOHH_04860 0.59 +0.8 889,906 - NOLOHH_04860 0.59 -0.3 889,906 - NOLOHH_04860 0.59 +2.2 890,075 + NOLOHH_04860 0.78 +0.5 890,075 + NOLOHH_04860 0.78 +1.6 890,075 + NOLOHH_04860 0.78 -0.2 890,076 - NOLOHH_04860 0.79 -0.2 890,076 - NOLOHH_04860 0.79 -0.1 890,466 + -1.0 890,467 - +1.2 890,531 + crfC NOLOHH_04865 0.12 -0.2 890,532 - crfC NOLOHH_04865 0.12 -2.7 890,551 + crfC NOLOHH_04865 0.13 +0.3 890,552 - crfC NOLOHH_04865 0.13 +0.5 890,573 + crfC NOLOHH_04865 0.14 -0.3 890,573 + crfC NOLOHH_04865 0.14 +0.6 890,573 + crfC NOLOHH_04865 0.14 +1.4 890,573 + crfC NOLOHH_04865 0.14 -0.9 890,574 - crfC NOLOHH_04865 0.14 -0.7 890,743 + crfC NOLOHH_04865 0.22 +0.8 890,743 + crfC NOLOHH_04865 0.22 -2.1 890,743 + crfC NOLOHH_04865 0.22 -0.1 890,744 - crfC NOLOHH_04865 0.22 +0.3 890,744 - crfC NOLOHH_04865 0.22 +0.7 890,744 - crfC NOLOHH_04865 0.22 -0.8 890,829 + crfC NOLOHH_04865 0.26 -0.0 890,830 - crfC NOLOHH_04865 0.26 -2.1 890,883 + crfC NOLOHH_04865 0.28 +0.5 890,884 - crfC NOLOHH_04865 0.28 -0.1 890,884 - crfC NOLOHH_04865 0.28 +0.8 890,937 + crfC NOLOHH_04865 0.30 -1.4 890,937 + crfC NOLOHH_04865 0.30 +0.6 890,938 - crfC NOLOHH_04865 0.30 +1.1 890,984 - crfC NOLOHH_04865 0.32 +1.0 891,061 - crfC NOLOHH_04865 0.36 -0.3 891,126 + crfC NOLOHH_04865 0.39 +0.8 891,182 + crfC NOLOHH_04865 0.41 -1.5 891,183 - crfC NOLOHH_04865 0.41 -1.1 891,217 - crfC NOLOHH_04865 0.43 +0.3 891,239 + crfC NOLOHH_04865 0.44 +0.3 891,240 - crfC NOLOHH_04865 0.44 +0.9 891,240 - crfC NOLOHH_04865 0.44 -0.1 891,333 + crfC NOLOHH_04865 0.48 -1.3 891,334 - crfC NOLOHH_04865 0.48 +0.5 891,446 - crfC NOLOHH_04865 0.53 +0.5 891,473 + crfC NOLOHH_04865 0.54 -0.7 891,513 + crfC NOLOHH_04865 0.56 -0.9 891,516 + crfC NOLOHH_04865 0.56 +1.8 891,516 + crfC NOLOHH_04865 0.56 -0.0 891,516 + crfC NOLOHH_04865 0.56 -0.6 891,516 + crfC NOLOHH_04865 0.56 -0.3 891,516 + crfC NOLOHH_04865 0.56 +0.5 891,517 - crfC NOLOHH_04865 0.56 +0.2 891,576 + crfC NOLOHH_04865 0.59 -0.8 891,577 - crfC NOLOHH_04865 0.59 +0.9 891,598 - crfC NOLOHH_04865 0.60 -0.3 891,598 - crfC NOLOHH_04865 0.60 -0.1 891,598 - crfC NOLOHH_04865 0.60 -0.1 891,611 + crfC NOLOHH_04865 0.61 +1.0 891,611 + crfC NOLOHH_04865 0.61 +0.5 891,611 + crfC NOLOHH_04865 0.61 +0.6 891,611 + crfC NOLOHH_04865 0.61 -1.1 891,611 + crfC NOLOHH_04865 0.61 -0.3 891,612 - crfC NOLOHH_04865 0.61 +1.5 891,612 - crfC NOLOHH_04865 0.61 +0.2 891,612 - crfC NOLOHH_04865 0.61 -0.4 891,612 - crfC NOLOHH_04865 0.61 +0.8 891,612 - crfC NOLOHH_04865 0.61 +0.9 891,684 + crfC NOLOHH_04865 0.64 +0.3 891,685 - crfC NOLOHH_04865 0.64 +0.8 891,685 - crfC NOLOHH_04865 0.64 -0.6 891,685 - crfC NOLOHH_04865 0.64 +0.3 891,685 - crfC NOLOHH_04865 0.64 -1.9 891,685 - crfC NOLOHH_04865 0.64 -1.3 891,686 + crfC NOLOHH_04865 0.64 +0.3 891,919 + crfC NOLOHH_04865 0.74 -1.2 891,920 - crfC NOLOHH_04865 0.74 +0.0 891,951 + crfC NOLOHH_04865 0.76 +0.7 892,027 - crfC NOLOHH_04865 0.79 -0.5 892,056 + crfC NOLOHH_04865 0.81 -0.9 892,056 + crfC NOLOHH_04865 0.81 -2.0 892,085 - crfC NOLOHH_04865 0.82 +0.3 892,085 - crfC NOLOHH_04865 0.82 +0.1 892,085 - crfC NOLOHH_04865 0.82 -1.1 892,165 - crfC NOLOHH_04865 0.85 -0.3 892,195 - crfC NOLOHH_04865 0.87 -0.5 892,200 + crfC NOLOHH_04865 0.87 -0.1 892,311 + +1.5 892,338 + -1.5 892,342 - -0.4 892,412 - -0.1 892,438 + +0.2 892,438 + -1.3 892,463 - -0.7 892,484 + +0.0 892,485 - +0.2 892,519 - -0.3 892,714 + +0.7 892,715 - +0.2 892,719 - +1.6 892,817 + +0.5 892,817 + -1.1 892,818 - +0.2 892,819 + -0.3 892,819 + +0.0 892,820 - -1.5 892,898 - +2.8 892,926 + yjdM NOLOHH_04870 0.11 +0.2 892,927 - yjdM NOLOHH_04870 0.11 -0.5 892,927 - yjdM NOLOHH_04870 0.11 -1.0 892,927 - yjdM NOLOHH_04870 0.11 +0.3 892,932 + yjdM NOLOHH_04870 0.12 +0.5 892,932 + yjdM NOLOHH_04870 0.12 +0.5 892,932 + yjdM NOLOHH_04870 0.12 -0.2 892,932 + yjdM NOLOHH_04870 0.12 -0.5 892,933 - yjdM NOLOHH_04870 0.13 +0.2 892,933 - yjdM NOLOHH_04870 0.13 -1.9 892,933 - yjdM NOLOHH_04870 0.13 -0.2 892,950 + yjdM NOLOHH_04870 0.18 -0.1 892,950 + yjdM NOLOHH_04870 0.18 -0.3 892,950 + yjdM NOLOHH_04870 0.18 -0.1 892,950 + yjdM NOLOHH_04870 0.18 +0.5 892,950 + yjdM NOLOHH_04870 0.18 -0.3 892,950 + yjdM NOLOHH_04870 0.18 +0.8 892,951 - yjdM NOLOHH_04870 0.18 +0.0 892,951 - yjdM NOLOHH_04870 0.18 -0.5 892,951 - yjdM NOLOHH_04870 0.18 -1.1 892,951 - yjdM NOLOHH_04870 0.18 -0.5 892,951 - yjdM NOLOHH_04870 0.18 +0.1 893,093 + yjdM NOLOHH_04870 0.60 +1.0 893,093 + yjdM NOLOHH_04870 0.60 +0.3 893,094 - yjdM NOLOHH_04870 0.61 -0.7 893,156 + yjdM NOLOHH_04870 0.79 +0.9 893,230 - -0.4 893,336 + -0.3 893,348 + +0.8 893,349 - -1.1 893,355 - +0.2 893,400 + +0.5 893,439 + yjdN NOLOHH_04880 0.12 -0.5 893,439 + yjdN NOLOHH_04880 0.12 +1.0 893,440 - yjdN NOLOHH_04880 0.12 -0.5 893,440 - yjdN NOLOHH_04880 0.12 +0.1 893,442 + yjdN NOLOHH_04880 0.13 -0.9 893,442 + yjdN NOLOHH_04880 0.13 +1.7 893,450 + yjdN NOLOHH_04880 0.15 -0.9 893,450 + yjdN NOLOHH_04880 0.15 -0.2 893,451 - yjdN NOLOHH_04880 0.15 +0.0 893,451 - yjdN NOLOHH_04880 0.15 -0.3 893,451 - yjdN NOLOHH_04880 0.15 -0.3 893,473 - yjdN NOLOHH_04880 0.20 +0.0
Or see this region's nucleotide sequence