Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_04640 and NOLOHH_04645 are separated by 110 nucleotides NOLOHH_04645 and NOLOHH_04650 are separated by 51 nucleotides NOLOHH_04650 and epmB are separated by 41 nucleotides epmB and NOLOHH_04660 are separated by 389 nucleotides
NOLOHH_04640: NOLOHH_04640 - Entericidin B, at 841,648 to 841,794
_04640
NOLOHH_04645: NOLOHH_04645 - Entericidin A, at 841,905 to 842,030
_04645
NOLOHH_04650: NOLOHH_04650 - Elongation factor P, at 842,082 to 842,648
_04650
NOLOHH_04655: epmB - EF-P beta-lysylation protein EpmB, at 842,690 to 843,718
epmB
NOLOHH_04660: NOLOHH_04660 - Protein, at 844,108 to 844,977
_04660
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.738 kb on + strand, within NOLOHH_04640 at 841.738 kb on + strand, within NOLOHH_04640 at 841.739 kb on - strand, within NOLOHH_04640 at 841.739 kb on - strand, within NOLOHH_04640 at 841.739 kb on - strand, within NOLOHH_04640 at 841.742 kb on - strand, within NOLOHH_04640 at 841.742 kb on - strand, within NOLOHH_04640 at 841.742 kb on - strand, within NOLOHH_04640 at 841.812 kb on + strand at 841.812 kb on + strand at 841.812 kb on + strand at 841.813 kb on - strand at 841.813 kb on - strand at 841.818 kb on + strand at 841.818 kb on + strand at 841.818 kb on + strand at 841.818 kb on + strand at 841.818 kb on + strand at 841.818 kb on + strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.819 kb on - strand at 841.822 kb on + strand at 841.822 kb on + strand at 841.822 kb on + strand at 841.823 kb on - strand at 841.823 kb on - strand at 841.823 kb on - strand at 841.823 kb on - strand at 841.823 kb on - strand at 841.823 kb on - strand at 841.832 kb on + strand at 841.832 kb on + strand at 841.835 kb on - strand at 841.843 kb on - strand at 841.843 kb on - strand at 841.846 kb on - strand at 841.848 kb on + strand at 841.849 kb on - strand at 841.973 kb on + strand, within NOLOHH_04645 at 841.973 kb on + strand, within NOLOHH_04645 at 842.044 kb on - strand at 842.084 kb on - strand at 842.084 kb on - strand at 842.676 kb on - strand at 842.680 kb on - strand at 842.699 kb on - strand at 842.699 kb on - strand at 842.699 kb on - strand at 842.709 kb on + strand at 842.794 kb on - strand, within epmB at 842.866 kb on + strand, within epmB at 843.137 kb on + strand, within epmB at 843.137 kb on + strand, within epmB at 843.717 kb on - strand at 843.717 kb on - strand at 843.758 kb on - strand at 843.763 kb on + strand at 843.863 kb on + strand at 843.864 kb on - strand at 843.864 kb on - strand at 843.864 kb on - strand at 843.930 kb on + strand at 843.931 kb on - strand at 843.951 kb on + strand at 843.951 kb on + strand at 843.954 kb on - strand at 844.013 kb on + strand at 844.014 kb on - strand at 844.014 kb on - strand at 844.105 kb on + strand at 844.185 kb on + strand at 844.218 kb on + strand, within NOLOHH_04660 at 844.281 kb on + strand, within NOLOHH_04660 at 844.542 kb on + strand, within NOLOHH_04660 at 844.571 kb on + strand, within NOLOHH_04660 at 844.576 kb on - strand, within NOLOHH_04660 at 844.576 kb on - strand, within NOLOHH_04660 at 844.578 kb on + strand, within NOLOHH_04660 at 844.579 kb on - strand, within NOLOHH_04660 at 844.606 kb on + strand, within NOLOHH_04660
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 841,738 + NOLOHH_04640 0.61 +0.0 841,738 + NOLOHH_04640 0.61 -1.1 841,739 - NOLOHH_04640 0.62 -1.1 841,739 - NOLOHH_04640 0.62 -1.8 841,739 - NOLOHH_04640 0.62 +1.5 841,742 - NOLOHH_04640 0.64 -1.0 841,742 - NOLOHH_04640 0.64 +0.9 841,742 - NOLOHH_04640 0.64 +0.3 841,812 + +0.3 841,812 + -0.5 841,812 + -1.5 841,813 - -2.3 841,813 - -0.2 841,818 + +0.8 841,818 + +0.8 841,818 + -0.6 841,818 + -0.5 841,818 + -0.4 841,818 + -0.1 841,819 - -0.7 841,819 - -0.3 841,819 - +0.1 841,819 - +0.5 841,819 - -1.0 841,819 - +0.8 841,819 - +1.3 841,822 + +1.5 841,822 + +2.1 841,822 + -0.7 841,823 - +0.5 841,823 - +0.5 841,823 - -0.0 841,823 - -0.3 841,823 - +0.1 841,823 - -0.2 841,832 + -0.4 841,832 + -0.5 841,835 - -0.0 841,843 - +0.3 841,843 - +0.5 841,846 - +1.1 841,848 + -0.3 841,849 - -1.1 841,973 + NOLOHH_04645 0.54 -1.0 841,973 + NOLOHH_04645 0.54 -2.5 842,044 - -1.1 842,084 - +0.5 842,084 - +1.1 842,676 - -2.7 842,680 - +0.5 842,699 - -1.1 842,699 - -1.5 842,699 - +1.5 842,709 + +1.1 842,794 - epmB NOLOHH_04655 0.10 +0.5 842,866 + epmB NOLOHH_04655 0.17 +0.5 843,137 + epmB NOLOHH_04655 0.43 -1.1 843,137 + epmB NOLOHH_04655 0.43 -0.5 843,717 - +1.8 843,717 - +0.4 843,758 - -0.3 843,763 + +0.1 843,863 + -0.5 843,864 - -1.1 843,864 - -0.3 843,864 - -0.1 843,930 + -0.5 843,931 - -1.5 843,951 + -0.2 843,951 + +0.5 843,954 - -0.5 844,013 + +0.5 844,014 - -0.8 844,014 - -0.6 844,105 + +1.0 844,185 + -0.6 844,218 + NOLOHH_04660 0.13 +1.0 844,281 + NOLOHH_04660 0.20 +0.2 844,542 + NOLOHH_04660 0.50 +2.1 844,571 + NOLOHH_04660 0.53 +0.1 844,576 - NOLOHH_04660 0.54 -0.2 844,576 - NOLOHH_04660 0.54 -0.1 844,578 + NOLOHH_04660 0.54 -0.3 844,579 - NOLOHH_04660 0.54 +1.1 844,606 + NOLOHH_04660 0.57 +0.2
Or see this region's nucleotide sequence