Strain Fitness in Escherichia coli ECOR27 around NOLOHH_04640

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntblc and sugE overlap by 4 nucleotidessugE and NOLOHH_04640 are separated by 181 nucleotidesNOLOHH_04640 and NOLOHH_04645 are separated by 110 nucleotidesNOLOHH_04645 and NOLOHH_04650 are separated by 51 nucleotidesNOLOHH_04650 and epmB are separated by 41 nucleotides NOLOHH_04630: blc - lipocalin Blc, at 840,619 to 841,152 blc NOLOHH_04635: sugE - quaternary ammonium compound efflux SMR transporter SugE, at 841,149 to 841,466 sugE NOLOHH_04640: NOLOHH_04640 - Entericidin B, at 841,648 to 841,794 _04640 NOLOHH_04645: NOLOHH_04645 - Entericidin A, at 841,905 to 842,030 _04645 NOLOHH_04650: NOLOHH_04650 - Elongation factor P, at 842,082 to 842,648 _04650 NOLOHH_04655: epmB - EF-P beta-lysylation protein EpmB, at 842,690 to 843,718 epmB Position (kb) 841 842Strain fitness (log2 ratio) -2 -1 0 1 2at 840.707 kb on + strand, within blcat 840.748 kb on + strand, within blcat 840.748 kb on + strand, within blcat 840.808 kb on + strand, within blcat 840.808 kb on + strand, within blcat 840.808 kb on + strand, within blcat 840.808 kb on + strand, within blcat 840.809 kb on - strand, within blcat 840.809 kb on - strand, within blcat 840.843 kb on + strand, within blcat 840.853 kb on + strand, within blcat 840.853 kb on + strand, within blcat 840.853 kb on + strand, within blcat 840.854 kb on - strand, within blcat 840.854 kb on - strand, within blcat 840.855 kb on + strand, within blcat 840.966 kb on + strand, within blcat 841.027 kb on + strand, within blcat 841.027 kb on + strand, within blcat 841.120 kb on - strandat 841.125 kb on + strandat 841.125 kb on + strandat 841.150 kb on + strandat 841.150 kb on + strandat 841.275 kb on - strand, within sugEat 841.291 kb on + strand, within sugEat 841.333 kb on - strand, within sugEat 841.333 kb on - strand, within sugEat 841.333 kb on - strand, within sugEat 841.367 kb on + strand, within sugEat 841.400 kb on + strand, within sugEat 841.401 kb on - strand, within sugEat 841.402 kb on + strand, within sugEat 841.402 kb on + strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.403 kb on - strand, within sugEat 841.423 kb on - strand, within sugEat 841.445 kb on + strandat 841.446 kb on - strandat 841.449 kb on + strandat 841.449 kb on + strandat 841.449 kb on + strandat 841.449 kb on + strandat 841.449 kb on + strandat 841.450 kb on - strandat 841.450 kb on - strandat 841.450 kb on - strandat 841.450 kb on - strandat 841.450 kb on - strandat 841.450 kb on - strandat 841.455 kb on - strandat 841.466 kb on + strandat 841.466 kb on + strandat 841.467 kb on - strandat 841.467 kb on - strandat 841.578 kb on + strandat 841.578 kb on + strandat 841.579 kb on - strandat 841.581 kb on + strandat 841.581 kb on + strandat 841.582 kb on - strandat 841.582 kb on - strandat 841.621 kb on + strandat 841.621 kb on + strandat 841.621 kb on + strandat 841.621 kb on + strandat 841.621 kb on + strandat 841.622 kb on - strandat 841.622 kb on - strandat 841.622 kb on - strandat 841.643 kb on + strandat 841.649 kb on + strandat 841.738 kb on + strand, within NOLOHH_04640at 841.738 kb on + strand, within NOLOHH_04640at 841.739 kb on - strand, within NOLOHH_04640at 841.739 kb on - strand, within NOLOHH_04640at 841.739 kb on - strand, within NOLOHH_04640at 841.742 kb on - strand, within NOLOHH_04640at 841.742 kb on - strand, within NOLOHH_04640at 841.742 kb on - strand, within NOLOHH_04640at 841.812 kb on + strandat 841.812 kb on + strandat 841.812 kb on + strandat 841.813 kb on - strandat 841.813 kb on - strandat 841.818 kb on + strandat 841.818 kb on + strandat 841.818 kb on + strandat 841.818 kb on + strandat 841.818 kb on + strandat 841.818 kb on + strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.819 kb on - strandat 841.822 kb on + strandat 841.822 kb on + strandat 841.822 kb on + strandat 841.823 kb on - strandat 841.823 kb on - strandat 841.823 kb on - strandat 841.823 kb on - strandat 841.823 kb on - strandat 841.823 kb on - strandat 841.832 kb on + strandat 841.832 kb on + strandat 841.835 kb on - strandat 841.843 kb on - strandat 841.843 kb on - strandat 841.846 kb on - strandat 841.848 kb on + strandat 841.849 kb on - strandat 841.973 kb on + strand, within NOLOHH_04645at 841.973 kb on + strand, within NOLOHH_04645at 842.044 kb on - strandat 842.084 kb on - strandat 842.084 kb on - strandat 842.676 kb on - strandat 842.680 kb on - strandat 842.699 kb on - strandat 842.699 kb on - strandat 842.699 kb on - strandat 842.709 kb on + strandat 842.794 kb on - strand, within epmB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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840,707 + blc NOLOHH_04630 0.16 +0.2
840,748 + blc NOLOHH_04630 0.24 -0.3
840,748 + blc NOLOHH_04630 0.24 -0.0
840,808 + blc NOLOHH_04630 0.35 -0.5
840,808 + blc NOLOHH_04630 0.35 +0.8
840,808 + blc NOLOHH_04630 0.35 +0.1
840,808 + blc NOLOHH_04630 0.35 -0.1
840,809 - blc NOLOHH_04630 0.36 +0.7
840,809 - blc NOLOHH_04630 0.36 +0.5
840,843 + blc NOLOHH_04630 0.42 -0.5
840,853 + blc NOLOHH_04630 0.44 -0.3
840,853 + blc NOLOHH_04630 0.44 -0.8
840,853 + blc NOLOHH_04630 0.44 +0.5
840,854 - blc NOLOHH_04630 0.44 +1.5
840,854 - blc NOLOHH_04630 0.44 -0.3
840,855 + blc NOLOHH_04630 0.44 +0.6
840,966 + blc NOLOHH_04630 0.65 -0.1
841,027 + blc NOLOHH_04630 0.76 -0.4
841,027 + blc NOLOHH_04630 0.76 +0.2
841,120 - +0.5
841,125 + -0.3
841,125 + -0.1
841,150 + +0.2
841,150 + -0.5
841,275 - sugE NOLOHH_04635 0.40 +0.2
841,291 + sugE NOLOHH_04635 0.45 -1.5
841,333 - sugE NOLOHH_04635 0.58 -1.2
841,333 - sugE NOLOHH_04635 0.58 +0.3
841,333 - sugE NOLOHH_04635 0.58 +0.5
841,367 + sugE NOLOHH_04635 0.69 +1.2
841,400 + sugE NOLOHH_04635 0.79 -0.9
841,401 - sugE NOLOHH_04635 0.79 +1.9
841,402 + sugE NOLOHH_04635 0.80 -0.3
841,402 + sugE NOLOHH_04635 0.80 -1.1
841,403 - sugE NOLOHH_04635 0.80 -0.7
841,403 - sugE NOLOHH_04635 0.80 +0.1
841,403 - sugE NOLOHH_04635 0.80 -0.1
841,403 - sugE NOLOHH_04635 0.80 +0.0
841,403 - sugE NOLOHH_04635 0.80 +1.2
841,403 - sugE NOLOHH_04635 0.80 -0.4
841,403 - sugE NOLOHH_04635 0.80 -1.1
841,403 - sugE NOLOHH_04635 0.80 +0.0
841,423 - sugE NOLOHH_04635 0.86 -0.4
841,445 + +0.8
841,446 - -1.2
841,449 + -0.8
841,449 + +1.8
841,449 + -0.4
841,449 + -1.3
841,449 + -2.1
841,450 - -0.8
841,450 - +0.2
841,450 - +0.6
841,450 - -0.4
841,450 - -0.1
841,450 - -0.3
841,455 - +0.9
841,466 + -2.2
841,466 + -0.1
841,467 - -0.5
841,467 - +0.1
841,578 + -0.3
841,578 + +0.3
841,579 - -0.4
841,581 + +1.2
841,581 + -0.4
841,582 - +0.2
841,582 - +0.7
841,621 + +1.5
841,621 + +1.2
841,621 + -0.5
841,621 + +0.3
841,621 + +1.1
841,622 - +0.1
841,622 - -0.9
841,622 - -0.7
841,643 + +0.7
841,649 + +0.5
841,738 + NOLOHH_04640 0.61 +0.0
841,738 + NOLOHH_04640 0.61 -1.1
841,739 - NOLOHH_04640 0.62 -1.1
841,739 - NOLOHH_04640 0.62 -1.8
841,739 - NOLOHH_04640 0.62 +1.5
841,742 - NOLOHH_04640 0.64 -1.0
841,742 - NOLOHH_04640 0.64 +0.9
841,742 - NOLOHH_04640 0.64 +0.3
841,812 + +0.3
841,812 + -0.5
841,812 + -1.5
841,813 - -2.3
841,813 - -0.2
841,818 + +0.8
841,818 + +0.8
841,818 + -0.6
841,818 + -0.5
841,818 + -0.4
841,818 + -0.1
841,819 - -0.7
841,819 - -0.3
841,819 - +0.1
841,819 - +0.5
841,819 - -1.0
841,819 - +0.8
841,819 - +1.3
841,822 + +1.5
841,822 + +2.1
841,822 + -0.7
841,823 - +0.5
841,823 - +0.5
841,823 - -0.0
841,823 - -0.3
841,823 - +0.1
841,823 - -0.2
841,832 + -0.4
841,832 + -0.5
841,835 - -0.0
841,843 - +0.3
841,843 - +0.5
841,846 - +1.1
841,848 + -0.3
841,849 - -1.1
841,973 + NOLOHH_04645 0.54 -1.0
841,973 + NOLOHH_04645 0.54 -2.5
842,044 - -1.1
842,084 - +0.5
842,084 - +1.1
842,676 - -2.7
842,680 - +0.5
842,699 - -1.1
842,699 - -1.5
842,699 - +1.5
842,709 + +1.1
842,794 - epmB NOLOHH_04655 0.10 +0.5

Or see this region's nucleotide sequence