Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsF and yjfY are separated by 326 nucleotides yjfY and ulaF are separated by 128 nucleotides ulaF and ulaE overlap by 1 nucleotides ulaE and ulaD are separated by 9 nucleotides
NOLOHH_04375: rpsF - 30S ribosomal protein S6, at 793,384 to 793,779
rpsF
NOLOHH_04380: yjfY - Uncharacterized protein YjfY, at 794,106 to 794,381
yjfY
NOLOHH_04385: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 794,510 to 795,196
ulaF
NOLOHH_04390: ulaE - L-ribulose-5-phosphate 3-epimerase UlaE, at 795,196 to 796,050
ulaE
NOLOHH_04395: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 796,060 to 796,710
ulaD
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.941 kb on + strand at 793.942 kb on - strand at 793.942 kb on - strand at 794.033 kb on - strand at 794.049 kb on - strand at 794.101 kb on + strand at 794.101 kb on + strand at 794.101 kb on + strand at 794.102 kb on - strand at 794.102 kb on - strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.105 kb on + strand at 794.106 kb on - strand at 794.106 kb on - strand at 794.106 kb on - strand at 794.156 kb on + strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.157 kb on - strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.198 kb on + strand, within yjfY at 794.199 kb on - strand, within yjfY at 794.199 kb on - strand, within yjfY at 794.218 kb on + strand, within yjfY at 794.218 kb on + strand, within yjfY at 794.219 kb on - strand, within yjfY at 794.229 kb on + strand, within yjfY at 794.229 kb on + strand, within yjfY at 794.230 kb on - strand, within yjfY at 794.231 kb on + strand, within yjfY at 794.232 kb on - strand, within yjfY at 794.241 kb on - strand, within yjfY at 794.241 kb on - strand, within yjfY at 794.275 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.307 kb on + strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.308 kb on - strand, within yjfY at 794.310 kb on + strand, within yjfY at 794.317 kb on + strand, within yjfY at 794.317 kb on + strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.318 kb on - strand, within yjfY at 794.351 kb on + strand, within yjfY at 794.370 kb on - strand at 794.373 kb on + strand at 794.373 kb on + strand at 794.374 kb on - strand at 794.389 kb on + strand at 794.390 kb on - strand at 794.411 kb on + strand at 794.411 kb on + strand at 794.411 kb on + strand at 794.412 kb on - strand at 794.466 kb on - strand at 794.474 kb on + strand at 794.511 kb on + strand at 794.512 kb on - strand at 794.526 kb on + strand at 794.527 kb on - strand at 794.527 kb on - strand at 794.546 kb on - strand at 794.546 kb on - strand at 794.560 kb on + strand at 794.602 kb on + strand, within ulaF at 794.722 kb on + strand, within ulaF at 794.722 kb on + strand, within ulaF at 794.723 kb on - strand, within ulaF at 794.781 kb on + strand, within ulaF at 794.818 kb on + strand, within ulaF at 794.818 kb on + strand, within ulaF at 794.819 kb on - strand, within ulaF at 794.819 kb on - strand, within ulaF at 794.842 kb on - strand, within ulaF at 795.035 kb on - strand, within ulaF at 795.128 kb on - strand at 795.185 kb on + strand at 795.186 kb on - strand at 795.198 kb on - strand at 795.198 kb on - strand at 795.320 kb on + strand, within ulaE at 795.321 kb on - strand, within ulaE at 795.364 kb on + strand, within ulaE at 795.365 kb on - strand, within ulaE at 795.421 kb on + strand, within ulaE at 795.421 kb on + strand, within ulaE at 795.421 kb on + strand, within ulaE at 795.421 kb on + strand, within ulaE at 795.421 kb on + strand, within ulaE at 795.422 kb on - strand, within ulaE at 795.432 kb on + strand, within ulaE at 795.530 kb on + strand, within ulaE at 795.531 kb on - strand, within ulaE at 795.531 kb on - strand, within ulaE at 795.683 kb on + strand, within ulaE at 795.686 kb on + strand, within ulaE at 795.686 kb on + strand, within ulaE at 795.687 kb on - strand, within ulaE at 795.687 kb on - strand, within ulaE at 795.751 kb on - strand, within ulaE at 795.757 kb on - strand, within ulaE at 795.757 kb on - strand, within ulaE at 795.931 kb on + strand, within ulaE at 796.051 kb on - strand at 796.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 793,941 + -0.0 793,941 + +0.7 793,941 + -0.5 793,941 + +1.2 793,941 + -0.3 793,942 - +0.1 793,942 - +1.1 794,033 - +0.6 794,049 - -1.1 794,101 + +0.0 794,101 + -0.9 794,101 + +0.5 794,102 - +0.1 794,102 - +1.5 794,105 + -0.1 794,105 + -1.3 794,105 + +1.2 794,105 + +0.1 794,105 + +0.3 794,105 + +0.3 794,105 + -0.1 794,106 - -0.5 794,106 - -0.3 794,106 - -0.3 794,156 + yjfY NOLOHH_04380 0.18 +0.1 794,157 - yjfY NOLOHH_04380 0.18 -0.7 794,157 - yjfY NOLOHH_04380 0.18 -1.3 794,157 - yjfY NOLOHH_04380 0.18 +0.6 794,198 + yjfY NOLOHH_04380 0.33 -1.3 794,198 + yjfY NOLOHH_04380 0.33 -0.9 794,198 + yjfY NOLOHH_04380 0.33 +0.5 794,198 + yjfY NOLOHH_04380 0.33 -1.1 794,199 - yjfY NOLOHH_04380 0.34 -0.5 794,199 - yjfY NOLOHH_04380 0.34 -1.5 794,218 + yjfY NOLOHH_04380 0.41 +1.8 794,218 + yjfY NOLOHH_04380 0.41 -1.9 794,219 - yjfY NOLOHH_04380 0.41 +0.8 794,229 + yjfY NOLOHH_04380 0.45 -0.2 794,229 + yjfY NOLOHH_04380 0.45 +0.1 794,230 - yjfY NOLOHH_04380 0.45 -0.4 794,231 + yjfY NOLOHH_04380 0.45 +0.5 794,232 - yjfY NOLOHH_04380 0.46 -0.5 794,241 - yjfY NOLOHH_04380 0.49 +3.9 794,241 - yjfY NOLOHH_04380 0.49 +1.4 794,275 + yjfY NOLOHH_04380 0.61 +0.3 794,307 + yjfY NOLOHH_04380 0.73 +1.3 794,307 + yjfY NOLOHH_04380 0.73 -0.7 794,307 + yjfY NOLOHH_04380 0.73 +0.5 794,307 + yjfY NOLOHH_04380 0.73 +0.5 794,308 - yjfY NOLOHH_04380 0.73 +1.5 794,308 - yjfY NOLOHH_04380 0.73 +0.2 794,308 - yjfY NOLOHH_04380 0.73 +0.1 794,308 - yjfY NOLOHH_04380 0.73 +0.5 794,308 - yjfY NOLOHH_04380 0.73 -0.1 794,308 - yjfY NOLOHH_04380 0.73 -0.0 794,308 - yjfY NOLOHH_04380 0.73 -0.8 794,310 + yjfY NOLOHH_04380 0.74 -0.5 794,317 + yjfY NOLOHH_04380 0.76 +0.7 794,317 + yjfY NOLOHH_04380 0.76 -0.0 794,318 - yjfY NOLOHH_04380 0.77 -0.7 794,318 - yjfY NOLOHH_04380 0.77 +0.9 794,318 - yjfY NOLOHH_04380 0.77 -0.9 794,351 + yjfY NOLOHH_04380 0.89 -0.3 794,370 - +0.5 794,373 + -0.3 794,373 + -1.7 794,374 - -1.1 794,389 + +0.5 794,390 - +0.1 794,411 + +0.6 794,411 + +0.1 794,411 + +0.1 794,412 - +0.2 794,466 - -0.5 794,474 + +0.5 794,511 + +1.0 794,512 - +0.4 794,526 + +0.4 794,527 - +0.1 794,527 - -0.7 794,546 - +0.1 794,546 - -1.4 794,560 + -0.9 794,602 + ulaF NOLOHH_04385 0.13 -1.3 794,722 + ulaF NOLOHH_04385 0.31 -1.9 794,722 + ulaF NOLOHH_04385 0.31 -0.5 794,723 - ulaF NOLOHH_04385 0.31 +0.5 794,781 + ulaF NOLOHH_04385 0.39 -0.9 794,818 + ulaF NOLOHH_04385 0.45 -0.7 794,818 + ulaF NOLOHH_04385 0.45 +0.3 794,819 - ulaF NOLOHH_04385 0.45 -1.1 794,819 - ulaF NOLOHH_04385 0.45 +0.3 794,842 - ulaF NOLOHH_04385 0.48 +0.1 795,035 - ulaF NOLOHH_04385 0.76 -2.0 795,128 - +0.6 795,185 + +0.0 795,186 - -1.5 795,198 - +0.5 795,198 - -0.8 795,320 + ulaE NOLOHH_04390 0.15 +0.0 795,321 - ulaE NOLOHH_04390 0.15 -0.2 795,364 + ulaE NOLOHH_04390 0.20 +0.6 795,365 - ulaE NOLOHH_04390 0.20 -1.1 795,421 + ulaE NOLOHH_04390 0.26 -0.0 795,421 + ulaE NOLOHH_04390 0.26 +0.6 795,421 + ulaE NOLOHH_04390 0.26 +0.7 795,421 + ulaE NOLOHH_04390 0.26 +1.7 795,421 + ulaE NOLOHH_04390 0.26 +1.0 795,422 - ulaE NOLOHH_04390 0.26 +0.0 795,432 + ulaE NOLOHH_04390 0.28 -0.8 795,530 + ulaE NOLOHH_04390 0.39 -1.0 795,531 - ulaE NOLOHH_04390 0.39 +0.8 795,531 - ulaE NOLOHH_04390 0.39 -1.1 795,683 + ulaE NOLOHH_04390 0.57 +1.3 795,686 + ulaE NOLOHH_04390 0.57 -1.1 795,686 + ulaE NOLOHH_04390 0.57 +0.5 795,687 - ulaE NOLOHH_04390 0.57 -0.0 795,687 - ulaE NOLOHH_04390 0.57 -0.4 795,751 - ulaE NOLOHH_04390 0.65 +0.0 795,757 - ulaE NOLOHH_04390 0.66 -1.3 795,757 - ulaE NOLOHH_04390 0.66 +2.0 795,931 + ulaE NOLOHH_04390 0.86 +0.9 796,051 - +0.1 796,061 + -0.8
Or see this region's nucleotide sequence