Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pac and yjiS are separated by 351 nucleotides yjiS and yjiR are separated by 176 nucleotides yjiR and NOLOHH_03800 are separated by 241 nucleotides
NOLOHH_03780: pac - Penicillin G acylase, at 674,627 to 677,167
pac
NOLOHH_03785: yjiS - DUF1127 domain-containing protein, at 677,519 to 677,683
yjiS
NOLOHH_03790: yjiR - Uncharacterized HTH-type transcriptional regulator YjiR, at 677,860 to 679,272
yjiR
NOLOHH_03800: NOLOHH_03800 - Putative transposase, YhgA-like, at 679,514 to 680,458
_03800
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 676.872 kb on + strand, within pac at 676.873 kb on - strand, within pac at 676.877 kb on - strand, within pac at 676.877 kb on - strand, within pac at 676.885 kb on + strand, within pac at 676.985 kb on + strand at 676.986 kb on - strand at 676.986 kb on - strand at 676.986 kb on - strand at 676.988 kb on + strand at 676.988 kb on + strand at 676.988 kb on + strand at 676.988 kb on + strand at 676.988 kb on + strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.989 kb on - strand at 676.993 kb on - strand at 676.993 kb on - strand at 676.993 kb on - strand at 677.004 kb on + strand at 677.005 kb on - strand at 677.005 kb on - strand at 677.009 kb on + strand at 677.010 kb on - strand at 677.010 kb on - strand at 677.020 kb on + strand at 677.020 kb on + strand at 677.020 kb on + strand at 677.020 kb on + strand at 677.021 kb on - strand at 677.021 kb on - strand at 677.021 kb on - strand at 677.021 kb on - strand at 677.021 kb on - strand at 677.035 kb on + strand at 677.050 kb on - strand at 677.070 kb on - strand at 677.103 kb on - strand at 677.112 kb on + strand at 677.115 kb on + strand at 677.115 kb on + strand at 677.115 kb on + strand at 677.132 kb on - strand at 677.186 kb on + strand at 677.187 kb on - strand at 677.188 kb on + strand at 677.189 kb on - strand at 677.189 kb on - strand at 677.189 kb on - strand at 677.207 kb on - strand at 677.224 kb on + strand at 677.296 kb on + strand at 677.377 kb on + strand at 677.378 kb on - strand at 677.378 kb on - strand at 677.378 kb on - strand at 677.412 kb on + strand at 677.412 kb on + strand at 677.423 kb on - strand at 677.435 kb on + strand at 677.436 kb on - strand at 677.442 kb on + strand at 677.443 kb on - strand at 677.453 kb on + strand at 677.454 kb on - strand at 677.515 kb on + strand at 677.516 kb on - strand at 677.648 kb on - strand, within yjiS at 677.648 kb on - strand, within yjiS at 677.761 kb on - strand at 677.769 kb on + strand at 677.780 kb on + strand at 677.781 kb on - strand at 677.954 kb on + strand at 677.954 kb on + strand at 678.066 kb on + strand, within yjiR at 678.066 kb on + strand, within yjiR at 678.067 kb on - strand, within yjiR at 678.123 kb on + strand, within yjiR at 678.124 kb on - strand, within yjiR at 678.124 kb on - strand, within yjiR at 678.147 kb on + strand, within yjiR at 678.242 kb on + strand, within yjiR at 678.261 kb on + strand, within yjiR at 678.261 kb on + strand, within yjiR at 678.394 kb on - strand, within yjiR at 678.438 kb on + strand, within yjiR at 678.463 kb on + strand, within yjiR at 678.463 kb on + strand, within yjiR at 678.582 kb on + strand, within yjiR at 678.613 kb on - strand, within yjiR at 678.627 kb on + strand, within yjiR at 678.627 kb on + strand, within yjiR at 678.628 kb on - strand, within yjiR at 678.630 kb on + strand, within yjiR at 678.681 kb on + strand, within yjiR at 678.682 kb on - strand, within yjiR at 678.682 kb on - strand, within yjiR at 678.707 kb on - strand, within yjiR at 678.801 kb on + strand, within yjiR at 678.801 kb on + strand, within yjiR at 678.801 kb on + strand, within yjiR at 678.801 kb on + strand, within yjiR at 678.802 kb on - strand, within yjiR at 678.802 kb on - strand, within yjiR at 678.864 kb on + strand, within yjiR at 678.864 kb on + strand, within yjiR at 678.865 kb on - strand, within yjiR at 678.865 kb on - strand, within yjiR at 678.871 kb on + strand, within yjiR at 678.871 kb on + strand, within yjiR at 678.872 kb on - strand, within yjiR at 678.888 kb on + strand, within yjiR at 678.940 kb on + strand, within yjiR at 678.940 kb on + strand, within yjiR at 678.941 kb on - strand, within yjiR at 678.973 kb on + strand, within yjiR at 678.974 kb on - strand, within yjiR at 678.974 kb on - strand, within yjiR at 678.994 kb on + strand, within yjiR at 678.994 kb on + strand, within yjiR at 678.995 kb on - strand, within yjiR at 678.995 kb on - strand, within yjiR at 678.996 kb on + strand, within yjiR at 678.997 kb on - strand, within yjiR at 678.997 kb on - strand, within yjiR at 678.997 kb on - strand, within yjiR at 679.016 kb on - strand, within yjiR at 679.038 kb on + strand, within yjiR at 679.038 kb on + strand, within yjiR at 679.039 kb on - strand, within yjiR at 679.062 kb on - strand, within yjiR at 679.071 kb on - strand, within yjiR at 679.071 kb on - strand, within yjiR at 679.071 kb on - strand, within yjiR at 679.093 kb on - strand, within yjiR at 679.172 kb on - strand at 679.176 kb on + strand at 679.176 kb on + strand at 679.177 kb on - strand at 679.177 kb on - strand at 679.177 kb on - strand at 679.184 kb on + strand at 679.185 kb on - strand at 679.185 kb on - strand at 679.185 kb on - strand at 679.271 kb on - strand at 679.321 kb on - strand at 679.469 kb on - strand at 679.563 kb on - strand at 679.563 kb on - strand at 679.594 kb on + strand at 679.705 kb on - strand, within NOLOHH_03800 at 679.727 kb on + strand, within NOLOHH_03800 at 679.728 kb on - strand, within NOLOHH_03800 at 679.805 kb on + strand, within NOLOHH_03800 at 679.806 kb on - strand, within NOLOHH_03800 at 679.829 kb on + strand, within NOLOHH_03800 at 679.829 kb on + strand, within NOLOHH_03800 at 679.829 kb on + strand, within NOLOHH_03800 at 679.829 kb on + strand, within NOLOHH_03800 at 679.844 kb on - strand, within NOLOHH_03800 at 679.844 kb on - strand, within NOLOHH_03800 at 679.865 kb on + strand, within NOLOHH_03800 at 679.865 kb on + strand, within NOLOHH_03800 at 679.868 kb on + strand, within NOLOHH_03800 at 679.869 kb on - strand, within NOLOHH_03800 at 679.883 kb on - strand, within NOLOHH_03800 at 679.910 kb on - strand, within NOLOHH_03800 at 679.910 kb on - strand, within NOLOHH_03800 at 680.007 kb on + strand, within NOLOHH_03800 at 680.007 kb on + strand, within NOLOHH_03800 at 680.008 kb on - strand, within NOLOHH_03800 at 680.008 kb on - strand, within NOLOHH_03800 at 680.008 kb on - strand, within NOLOHH_03800 at 680.075 kb on - strand, within NOLOHH_03800 at 680.093 kb on + strand, within NOLOHH_03800 at 680.093 kb on + strand, within NOLOHH_03800 at 680.093 kb on + strand, within NOLOHH_03800 at 680.094 kb on - strand, within NOLOHH_03800 at 680.094 kb on - strand, within NOLOHH_03800 at 680.094 kb on - strand, within NOLOHH_03800 at 680.104 kb on + strand, within NOLOHH_03800 at 680.188 kb on + strand, within NOLOHH_03800 at 680.188 kb on + strand, within NOLOHH_03800 at 680.189 kb on - strand, within NOLOHH_03800 at 680.189 kb on - strand, within NOLOHH_03800 at 680.226 kb on + strand, within NOLOHH_03800 at 680.226 kb on + strand, within NOLOHH_03800 at 680.226 kb on + strand, within NOLOHH_03800 at 680.226 kb on + strand, within NOLOHH_03800 at 680.226 kb on + strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.227 kb on - strand, within NOLOHH_03800 at 680.230 kb on + strand, within NOLOHH_03800 at 680.230 kb on + strand, within NOLOHH_03800 at 680.230 kb on + strand, within NOLOHH_03800 at 680.230 kb on + strand, within NOLOHH_03800 at 680.230 kb on + strand, within NOLOHH_03800 at 680.231 kb on - strand, within NOLOHH_03800 at 680.231 kb on - strand, within NOLOHH_03800 at 680.231 kb on - strand, within NOLOHH_03800 at 680.231 kb on - strand, within NOLOHH_03800 at 680.233 kb on - strand, within NOLOHH_03800 at 680.252 kb on - strand, within NOLOHH_03800 at 680.256 kb on - strand, within NOLOHH_03800
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 676,872 + pac NOLOHH_03780 0.88 -0.6 676,873 - pac NOLOHH_03780 0.88 -0.2 676,877 - pac NOLOHH_03780 0.89 -2.4 676,877 - pac NOLOHH_03780 0.89 -1.0 676,885 + pac NOLOHH_03780 0.89 -0.1 676,985 + +0.8 676,986 - +0.4 676,986 - +0.9 676,986 - -0.1 676,988 + -1.0 676,988 + -1.0 676,988 + +0.0 676,988 + -0.3 676,988 + +0.1 676,989 - +0.2 676,989 - +1.0 676,989 - +2.4 676,989 - -0.7 676,989 - +0.6 676,989 - +0.0 676,989 - +0.2 676,989 - +0.4 676,989 - +0.8 676,989 - +0.3 676,989 - -0.2 676,989 - -0.3 676,989 - -1.3 676,993 - -0.9 676,993 - -0.8 676,993 - -0.6 677,004 + +0.4 677,005 - +0.3 677,005 - +0.4 677,009 + +0.4 677,010 - -0.6 677,010 - +0.1 677,020 + -0.6 677,020 + -0.6 677,020 + +1.4 677,020 + +0.4 677,021 - +1.4 677,021 - +2.0 677,021 - +0.3 677,021 - -0.4 677,021 - -1.7 677,035 + -0.6 677,050 - -0.8 677,070 - -0.2 677,103 - -0.4 677,112 + +0.4 677,115 + +0.0 677,115 + +0.8 677,115 + +1.4 677,132 - -1.2 677,186 + +0.4 677,187 - +0.3 677,188 + -1.4 677,189 - +0.1 677,189 - +0.1 677,189 - -0.7 677,207 - -1.0 677,224 + -0.7 677,296 + +0.4 677,377 + -0.2 677,378 - +0.4 677,378 - -0.2 677,378 - -0.3 677,412 + -0.6 677,412 + -1.6 677,423 - +0.4 677,435 + -0.9 677,436 - +0.4 677,442 + -0.4 677,443 - -0.2 677,453 + -0.7 677,454 - -0.0 677,515 + -0.3 677,516 - +0.4 677,648 - yjiS NOLOHH_03785 0.78 -0.2 677,648 - yjiS NOLOHH_03785 0.78 +0.1 677,761 - -0.8 677,769 + +0.4 677,780 + -0.7 677,781 - +1.7 677,954 + +0.6 677,954 + +1.0 678,066 + yjiR NOLOHH_03790 0.15 +0.4 678,066 + yjiR NOLOHH_03790 0.15 -0.0 678,067 - yjiR NOLOHH_03790 0.15 -0.3 678,123 + yjiR NOLOHH_03790 0.19 +0.2 678,124 - yjiR NOLOHH_03790 0.19 -0.3 678,124 - yjiR NOLOHH_03790 0.19 -0.4 678,147 + yjiR NOLOHH_03790 0.20 -1.1 678,242 + yjiR NOLOHH_03790 0.27 -0.5 678,261 + yjiR NOLOHH_03790 0.28 +0.4 678,261 + yjiR NOLOHH_03790 0.28 -1.0 678,394 - yjiR NOLOHH_03790 0.38 +0.1 678,438 + yjiR NOLOHH_03790 0.41 -0.6 678,463 + yjiR NOLOHH_03790 0.43 -0.3 678,463 + yjiR NOLOHH_03790 0.43 +0.4 678,582 + yjiR NOLOHH_03790 0.51 +0.4 678,613 - yjiR NOLOHH_03790 0.53 -0.4 678,627 + yjiR NOLOHH_03790 0.54 -0.3 678,627 + yjiR NOLOHH_03790 0.54 -0.6 678,628 - yjiR NOLOHH_03790 0.54 +0.1 678,630 + yjiR NOLOHH_03790 0.54 -0.8 678,681 + yjiR NOLOHH_03790 0.58 -1.4 678,682 - yjiR NOLOHH_03790 0.58 +0.0 678,682 - yjiR NOLOHH_03790 0.58 +0.0 678,707 - yjiR NOLOHH_03790 0.60 +1.4 678,801 + yjiR NOLOHH_03790 0.67 +0.1 678,801 + yjiR NOLOHH_03790 0.67 +0.0 678,801 + yjiR NOLOHH_03790 0.67 -0.6 678,801 + yjiR NOLOHH_03790 0.67 +1.4 678,802 - yjiR NOLOHH_03790 0.67 -0.4 678,802 - yjiR NOLOHH_03790 0.67 +0.2 678,864 + yjiR NOLOHH_03790 0.71 -0.0 678,864 + yjiR NOLOHH_03790 0.71 -0.6 678,865 - yjiR NOLOHH_03790 0.71 +1.4 678,865 - yjiR NOLOHH_03790 0.71 +2.0 678,871 + yjiR NOLOHH_03790 0.72 +0.1 678,871 + yjiR NOLOHH_03790 0.72 +0.7 678,872 - yjiR NOLOHH_03790 0.72 +2.8 678,888 + yjiR NOLOHH_03790 0.73 -0.3 678,940 + yjiR NOLOHH_03790 0.76 +0.0 678,940 + yjiR NOLOHH_03790 0.76 -0.4 678,941 - yjiR NOLOHH_03790 0.77 +2.4 678,973 + yjiR NOLOHH_03790 0.79 +0.9 678,974 - yjiR NOLOHH_03790 0.79 -0.6 678,974 - yjiR NOLOHH_03790 0.79 +1.4 678,994 + yjiR NOLOHH_03790 0.80 +0.1 678,994 + yjiR NOLOHH_03790 0.80 -0.2 678,995 - yjiR NOLOHH_03790 0.80 -1.1 678,995 - yjiR NOLOHH_03790 0.80 -0.6 678,996 + yjiR NOLOHH_03790 0.80 +0.7 678,997 - yjiR NOLOHH_03790 0.80 +0.4 678,997 - yjiR NOLOHH_03790 0.80 +0.7 678,997 - yjiR NOLOHH_03790 0.80 -0.4 679,016 - yjiR NOLOHH_03790 0.82 -1.1 679,038 + yjiR NOLOHH_03790 0.83 +0.4 679,038 + yjiR NOLOHH_03790 0.83 +0.8 679,039 - yjiR NOLOHH_03790 0.83 +1.0 679,062 - yjiR NOLOHH_03790 0.85 +0.7 679,071 - yjiR NOLOHH_03790 0.86 -0.8 679,071 - yjiR NOLOHH_03790 0.86 +0.2 679,071 - yjiR NOLOHH_03790 0.86 +0.4 679,093 - yjiR NOLOHH_03790 0.87 +0.0 679,172 - +0.6 679,176 + +0.0 679,176 + -0.3 679,177 - -0.0 679,177 - -1.1 679,177 - +0.7 679,184 + -0.5 679,185 - +2.6 679,185 - +3.9 679,185 - +1.0 679,271 - +0.4 679,321 - +0.2 679,469 - -1.1 679,563 - +0.1 679,563 - -0.8 679,594 + +0.3 679,705 - NOLOHH_03800 0.20 -2.1 679,727 + NOLOHH_03800 0.23 +1.2 679,728 - NOLOHH_03800 0.23 -1.7 679,805 + NOLOHH_03800 0.31 -0.6 679,806 - NOLOHH_03800 0.31 +1.4 679,829 + NOLOHH_03800 0.33 +0.6 679,829 + NOLOHH_03800 0.33 +1.4 679,829 + NOLOHH_03800 0.33 -1.9 679,829 + NOLOHH_03800 0.33 -0.2 679,844 - NOLOHH_03800 0.35 +1.2 679,844 - NOLOHH_03800 0.35 -0.8 679,865 + NOLOHH_03800 0.37 -1.9 679,865 + NOLOHH_03800 0.37 -1.1 679,868 + NOLOHH_03800 0.37 +0.4 679,869 - NOLOHH_03800 0.38 +0.4 679,883 - NOLOHH_03800 0.39 +0.4 679,910 - NOLOHH_03800 0.42 +0.4 679,910 - NOLOHH_03800 0.42 +0.7 680,007 + NOLOHH_03800 0.52 -0.1 680,007 + NOLOHH_03800 0.52 +0.3 680,008 - NOLOHH_03800 0.52 +1.8 680,008 - NOLOHH_03800 0.52 +0.8 680,008 - NOLOHH_03800 0.52 +1.4 680,075 - NOLOHH_03800 0.59 -0.4 680,093 + NOLOHH_03800 0.61 -1.9 680,093 + NOLOHH_03800 0.61 +0.6 680,093 + NOLOHH_03800 0.61 +0.1 680,094 - NOLOHH_03800 0.61 +0.4 680,094 - NOLOHH_03800 0.61 +0.3 680,094 - NOLOHH_03800 0.61 -0.4 680,104 + NOLOHH_03800 0.62 -0.3 680,188 + NOLOHH_03800 0.71 -0.6 680,188 + NOLOHH_03800 0.71 +0.2 680,189 - NOLOHH_03800 0.71 +0.1 680,189 - NOLOHH_03800 0.71 -0.6 680,226 + NOLOHH_03800 0.75 -1.6 680,226 + NOLOHH_03800 0.75 +0.6 680,226 + NOLOHH_03800 0.75 +1.4 680,226 + NOLOHH_03800 0.75 -0.9 680,226 + NOLOHH_03800 0.75 -1.9 680,227 - NOLOHH_03800 0.75 -0.4 680,227 - NOLOHH_03800 0.75 -0.4 680,227 - NOLOHH_03800 0.75 +0.0 680,227 - NOLOHH_03800 0.75 -1.3 680,227 - NOLOHH_03800 0.75 -0.0 680,227 - NOLOHH_03800 0.75 -2.9 680,227 - NOLOHH_03800 0.75 +0.3 680,227 - NOLOHH_03800 0.75 +0.4 680,230 + NOLOHH_03800 0.76 -0.2 680,230 + NOLOHH_03800 0.76 +1.1 680,230 + NOLOHH_03800 0.76 -1.3 680,230 + NOLOHH_03800 0.76 -0.2 680,230 + NOLOHH_03800 0.76 +0.3 680,231 - NOLOHH_03800 0.76 -0.1 680,231 - NOLOHH_03800 0.76 +1.1 680,231 - NOLOHH_03800 0.76 -0.3 680,231 - NOLOHH_03800 0.76 +0.4 680,233 - NOLOHH_03800 0.76 +0.2 680,252 - NOLOHH_03800 0.78 -1.4 680,256 - NOLOHH_03800 0.79 +0.7
Or see this region's nucleotide sequence