Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tsr and hpaR are separated by 118 nucleotides hpaR and hpaG are separated by 271 nucleotides hpaG and hpaE overlap by 4 nucleotides
NOLOHH_03705: tsr - methyl-accepting chemotaxis protein, at 657,826 to 659,490
tsr
NOLOHH_03710: hpaR - homoprotocatechuate degradation operon regulator HpaR, at 659,609 to 660,055
hpaR
NOLOHH_03715: hpaG - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, at 660,327 to 661,616
hpaG
NOLOHH_03720: hpaE - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 661,613 to 663,079
hpaE
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 659.362 kb on + strand at 659.428 kb on + strand at 659.428 kb on + strand at 659.428 kb on + strand at 659.429 kb on - strand at 659.429 kb on - strand at 659.429 kb on - strand at 659.458 kb on + strand at 659.478 kb on + strand at 659.478 kb on + strand at 659.485 kb on + strand at 659.547 kb on - strand at 659.599 kb on + strand at 659.659 kb on + strand, within hpaR at 659.660 kb on - strand, within hpaR at 659.759 kb on - strand, within hpaR at 659.760 kb on + strand, within hpaR at 659.760 kb on + strand, within hpaR at 659.760 kb on + strand, within hpaR at 659.761 kb on - strand, within hpaR at 659.761 kb on - strand, within hpaR at 659.761 kb on - strand, within hpaR at 659.761 kb on - strand, within hpaR at 659.792 kb on - strand, within hpaR at 659.793 kb on + strand, within hpaR at 659.793 kb on + strand, within hpaR at 659.793 kb on + strand, within hpaR at 659.793 kb on + strand, within hpaR at 659.794 kb on - strand, within hpaR at 659.794 kb on - strand, within hpaR at 660.085 kb on + strand at 660.291 kb on - strand at 660.339 kb on - strand at 660.339 kb on - strand at 660.409 kb on - strand at 660.444 kb on - strand at 660.444 kb on - strand at 660.444 kb on - strand at 660.556 kb on + strand, within hpaG at 660.579 kb on + strand, within hpaG at 660.633 kb on + strand, within hpaG at 660.634 kb on - strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.773 kb on - strand, within hpaG at 660.780 kb on - strand, within hpaG at 660.874 kb on + strand, within hpaG at 660.875 kb on - strand, within hpaG at 661.020 kb on + strand, within hpaG at 661.021 kb on - strand, within hpaG at 661.021 kb on - strand, within hpaG at 661.091 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.218 kb on + strand, within hpaG at 661.218 kb on + strand, within hpaG at 661.219 kb on - strand, within hpaG at 661.275 kb on + strand, within hpaG at 661.276 kb on - strand, within hpaG at 661.278 kb on + strand, within hpaG at 661.367 kb on + strand, within hpaG at 661.402 kb on + strand, within hpaG at 661.462 kb on + strand, within hpaG at 661.462 kb on + strand, within hpaG at 661.463 kb on - strand, within hpaG at 661.463 kb on - strand, within hpaG at 661.472 kb on + strand, within hpaG at 661.472 kb on + strand, within hpaG at 661.522 kb on + strand at 661.676 kb on - strand at 661.979 kb on + strand, within hpaE at 662.006 kb on + strand, within hpaE at 662.007 kb on - strand, within hpaE at 662.211 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.263 kb on - strand, within hpaE at 662.263 kb on - strand, within hpaE at 662.484 kb on - strand, within hpaE at 662.572 kb on + strand, within hpaE at 662.573 kb on - strand, within hpaE at 662.573 kb on - strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.607 kb on - strand, within hpaE at 662.607 kb on - strand, within hpaE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 659,362 + +0.1 659,428 + -0.6 659,428 + +1.2 659,428 + +0.4 659,429 - +0.4 659,429 - +1.7 659,429 - -0.1 659,458 + +0.0 659,478 + +0.6 659,478 + +0.0 659,485 + +0.1 659,547 - +1.9 659,599 + +0.1 659,659 + hpaR NOLOHH_03710 0.11 +0.8 659,660 - hpaR NOLOHH_03710 0.11 -0.6 659,759 - hpaR NOLOHH_03710 0.34 -0.4 659,760 + hpaR NOLOHH_03710 0.34 +0.8 659,760 + hpaR NOLOHH_03710 0.34 +0.3 659,760 + hpaR NOLOHH_03710 0.34 -1.2 659,761 - hpaR NOLOHH_03710 0.34 +0.3 659,761 - hpaR NOLOHH_03710 0.34 -0.1 659,761 - hpaR NOLOHH_03710 0.34 +0.2 659,761 - hpaR NOLOHH_03710 0.34 -1.6 659,792 - hpaR NOLOHH_03710 0.41 -0.4 659,793 + hpaR NOLOHH_03710 0.41 -0.6 659,793 + hpaR NOLOHH_03710 0.41 +0.0 659,793 + hpaR NOLOHH_03710 0.41 -2.3 659,793 + hpaR NOLOHH_03710 0.41 -1.6 659,794 - hpaR NOLOHH_03710 0.41 +0.2 659,794 - hpaR NOLOHH_03710 0.41 +1.0 660,085 + -1.8 660,291 - -0.1 660,339 - -0.1 660,339 - -1.2 660,409 - +0.2 660,444 - -1.7 660,444 - -0.2 660,444 - -0.2 660,556 + hpaG NOLOHH_03715 0.18 +0.3 660,579 + hpaG NOLOHH_03715 0.20 -0.6 660,633 + hpaG NOLOHH_03715 0.24 -0.4 660,634 - hpaG NOLOHH_03715 0.24 +0.8 660,723 + hpaG NOLOHH_03715 0.31 -0.1 660,723 + hpaG NOLOHH_03715 0.31 +0.0 660,723 + hpaG NOLOHH_03715 0.31 -1.1 660,723 + hpaG NOLOHH_03715 0.31 -1.4 660,723 + hpaG NOLOHH_03715 0.31 +0.8 660,723 + hpaG NOLOHH_03715 0.31 +0.4 660,723 + hpaG NOLOHH_03715 0.31 +0.2 660,724 - hpaG NOLOHH_03715 0.31 -0.8 660,724 - hpaG NOLOHH_03715 0.31 -2.7 660,724 - hpaG NOLOHH_03715 0.31 +0.8 660,724 - hpaG NOLOHH_03715 0.31 -0.8 660,724 - hpaG NOLOHH_03715 0.31 -0.7 660,724 - hpaG NOLOHH_03715 0.31 +0.7 660,724 - hpaG NOLOHH_03715 0.31 -0.6 660,724 - hpaG NOLOHH_03715 0.31 -1.4 660,773 - hpaG NOLOHH_03715 0.35 +0.1 660,780 - hpaG NOLOHH_03715 0.35 +0.9 660,874 + hpaG NOLOHH_03715 0.42 -0.2 660,875 - hpaG NOLOHH_03715 0.42 +1.0 661,020 + hpaG NOLOHH_03715 0.54 +0.8 661,021 - hpaG NOLOHH_03715 0.54 +0.5 661,021 - hpaG NOLOHH_03715 0.54 -0.4 661,091 + hpaG NOLOHH_03715 0.59 +0.2 661,140 + hpaG NOLOHH_03715 0.63 +0.4 661,140 + hpaG NOLOHH_03715 0.63 -0.9 661,140 + hpaG NOLOHH_03715 0.63 -1.3 661,140 + hpaG NOLOHH_03715 0.63 -0.3 661,140 + hpaG NOLOHH_03715 0.63 -0.9 661,141 - hpaG NOLOHH_03715 0.63 +1.0 661,141 - hpaG NOLOHH_03715 0.63 +0.2 661,141 - hpaG NOLOHH_03715 0.63 +1.4 661,141 - hpaG NOLOHH_03715 0.63 -0.3 661,141 - hpaG NOLOHH_03715 0.63 -0.1 661,141 - hpaG NOLOHH_03715 0.63 -0.3 661,141 - hpaG NOLOHH_03715 0.63 +1.2 661,141 - hpaG NOLOHH_03715 0.63 -1.0 661,149 + hpaG NOLOHH_03715 0.64 +1.4 661,149 + hpaG NOLOHH_03715 0.64 +0.9 661,149 + hpaG NOLOHH_03715 0.64 -0.0 661,149 + hpaG NOLOHH_03715 0.64 +0.2 661,168 + hpaG NOLOHH_03715 0.65 +0.3 661,168 + hpaG NOLOHH_03715 0.65 -1.2 661,168 + hpaG NOLOHH_03715 0.65 -1.6 661,169 - hpaG NOLOHH_03715 0.65 +1.0 661,169 - hpaG NOLOHH_03715 0.65 +0.8 661,169 - hpaG NOLOHH_03715 0.65 -0.6 661,218 + hpaG NOLOHH_03715 0.69 -0.0 661,218 + hpaG NOLOHH_03715 0.69 -0.2 661,219 - hpaG NOLOHH_03715 0.69 +0.3 661,275 + hpaG NOLOHH_03715 0.73 +1.2 661,276 - hpaG NOLOHH_03715 0.74 -0.6 661,278 + hpaG NOLOHH_03715 0.74 -0.4 661,367 + hpaG NOLOHH_03715 0.81 -0.4 661,402 + hpaG NOLOHH_03715 0.83 +1.2 661,462 + hpaG NOLOHH_03715 0.88 -0.6 661,462 + hpaG NOLOHH_03715 0.88 +0.4 661,463 - hpaG NOLOHH_03715 0.88 -0.7 661,463 - hpaG NOLOHH_03715 0.88 +0.9 661,472 + hpaG NOLOHH_03715 0.89 -0.1 661,472 + hpaG NOLOHH_03715 0.89 -0.6 661,522 + -0.6 661,676 - -0.9 661,979 + hpaE NOLOHH_03720 0.25 -0.1 662,006 + hpaE NOLOHH_03720 0.27 -0.2 662,007 - hpaE NOLOHH_03720 0.27 +0.5 662,211 + hpaE NOLOHH_03720 0.41 -0.2 662,262 + hpaE NOLOHH_03720 0.44 +1.5 662,262 + hpaE NOLOHH_03720 0.44 -0.3 662,262 + hpaE NOLOHH_03720 0.44 -0.6 662,262 + hpaE NOLOHH_03720 0.44 -0.2 662,262 + hpaE NOLOHH_03720 0.44 -0.2 662,262 + hpaE NOLOHH_03720 0.44 -0.8 662,262 + hpaE NOLOHH_03720 0.44 +0.4 662,262 + hpaE NOLOHH_03720 0.44 +0.4 662,262 + hpaE NOLOHH_03720 0.44 +0.4 662,263 - hpaE NOLOHH_03720 0.44 +0.4 662,263 - hpaE NOLOHH_03720 0.44 +1.9 662,484 - hpaE NOLOHH_03720 0.59 +1.1 662,572 + hpaE NOLOHH_03720 0.65 -0.6 662,573 - hpaE NOLOHH_03720 0.65 -1.4 662,573 - hpaE NOLOHH_03720 0.65 +0.9 662,606 + hpaE NOLOHH_03720 0.68 +1.1 662,606 + hpaE NOLOHH_03720 0.68 +2.2 662,606 + hpaE NOLOHH_03720 0.68 +0.7 662,606 + hpaE NOLOHH_03720 0.68 -1.2 662,607 - hpaE NOLOHH_03720 0.68 -0.6 662,607 - hpaE NOLOHH_03720 0.68 -1.9
Or see this region's nucleotide sequence