Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Leu_trna and Leu_trna are separated by 28 nucleotides Leu_trna and Leu_trna are separated by 34 nucleotides Leu_trna and yjjZ are separated by 38 nucleotides yjjZ and fhuF are separated by 140 nucleotides fhuF and bglJ are separated by 37 nucleotides bglJ and yjjQ overlap by 43 nucleotides
NOLOHH_03625: Leu_trna - tRNA-Leu(cag), at 644,735 to 644,821
_trna
NOLOHH_03630: Leu_trna - tRNA-Leu(cag), at 644,850 to 644,936
_trna
NOLOHH_03635: Leu_trna - tRNA-Leu(cag), at 644,971 to 645,057
_trna
NOLOHH_03640: yjjZ - Uncharacterized protein YjjZ, at 645,096 to 645,332
yjjZ
NOLOHH_03645: fhuF - siderophore-iron reductase FhuF, at 645,473 to 646,261
fhuF
NOLOHH_03650: bglJ - DNA-binding transcriptional activator BglJ, at 646,299 to 646,976
bglJ
NOLOHH_03655: yjjQ - Putative transcription factor YjjQ, at 646,934 to 647,659
yjjQ
Position (kb) 645
646
647 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.535 kb on - strand at 644.553 kb on + strand at 644.553 kb on + strand at 644.554 kb on - strand at 644.612 kb on + strand at 644.612 kb on + strand at 644.613 kb on - strand at 644.643 kb on - strand at 644.643 kb on - strand at 644.656 kb on + strand at 644.657 kb on - strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.661 kb on - strand at 644.661 kb on - strand at 644.661 kb on - strand at 644.688 kb on + strand at 645.060 kb on + strand at 645.060 kb on + strand at 645.066 kb on + strand at 645.066 kb on + strand at 645.169 kb on + strand, within yjjZ at 645.170 kb on - strand, within yjjZ at 645.191 kb on - strand, within yjjZ at 645.214 kb on - strand, within yjjZ at 645.253 kb on - strand, within yjjZ at 645.263 kb on - strand, within yjjZ at 645.263 kb on - strand, within yjjZ at 645.320 kb on + strand at 645.321 kb on - strand at 645.321 kb on - strand at 645.464 kb on - strand at 645.498 kb on - strand at 645.498 kb on - strand at 645.508 kb on + strand at 645.509 kb on - strand at 645.558 kb on + strand, within fhuF at 645.559 kb on - strand, within fhuF at 645.669 kb on + strand, within fhuF at 645.689 kb on + strand, within fhuF at 645.690 kb on - strand, within fhuF at 645.690 kb on - strand, within fhuF at 645.700 kb on + strand, within fhuF at 645.700 kb on + strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.704 kb on + strand, within fhuF at 645.705 kb on - strand, within fhuF at 645.705 kb on - strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.825 kb on + strand, within fhuF at 645.826 kb on - strand, within fhuF at 645.826 kb on - strand, within fhuF at 645.987 kb on + strand, within fhuF at 645.988 kb on - strand, within fhuF at 645.988 kb on - strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.037 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.053 kb on - strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.058 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.250 kb on - strand at 646.250 kb on - strand at 646.290 kb on + strand at 646.304 kb on - strand at 646.319 kb on + strand at 646.320 kb on - strand at 646.340 kb on + strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.345 kb on - strand at 646.345 kb on - strand at 646.345 kb on - strand at 646.415 kb on + strand, within bglJ at 646.416 kb on - strand, within bglJ at 646.416 kb on - strand, within bglJ at 646.437 kb on - strand, within bglJ at 646.474 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.497 kb on + strand, within bglJ at 646.498 kb on - strand, within bglJ at 646.498 kb on - strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.585 kb on - strand, within bglJ at 646.635 kb on + strand, within bglJ at 646.636 kb on - strand, within bglJ at 646.636 kb on - strand, within bglJ at 646.689 kb on - strand, within bglJ at 646.708 kb on - strand, within bglJ at 646.708 kb on - strand, within bglJ at 646.755 kb on + strand, within bglJ at 646.756 kb on - strand, within bglJ at 646.756 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.860 kb on - strand, within bglJ at 646.860 kb on - strand, within bglJ at 646.868 kb on + strand, within bglJ at 646.869 kb on - strand, within bglJ at 646.869 kb on - strand, within bglJ at 646.958 kb on + strand at 646.959 kb on - strand at 647.009 kb on - strand, within yjjQ at 647.009 kb on - strand, within yjjQ at 647.036 kb on + strand, within yjjQ at 647.037 kb on - strand, within yjjQ at 647.044 kb on + strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.116 kb on + strand, within yjjQ at 647.166 kb on - strand, within yjjQ at 647.166 kb on - strand, within yjjQ at 647.169 kb on - strand, within yjjQ at 647.178 kb on - strand, within yjjQ at 647.219 kb on - strand, within yjjQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 644,535 - +0.2 644,553 + -0.3 644,553 + +0.6 644,554 - +0.8 644,612 + +0.0 644,612 + +0.4 644,613 - +0.0 644,643 - -0.6 644,643 - +0.9 644,656 + +0.6 644,657 - +0.3 644,660 + +0.5 644,660 + -0.2 644,660 + +1.4 644,660 + -0.6 644,660 + -0.2 644,660 + -1.5 644,660 + +0.6 644,661 - -0.5 644,661 - +0.2 644,661 - -0.3 644,688 + +0.4 645,060 + -0.4 645,060 + -1.7 645,066 + -0.2 645,066 + -0.4 645,169 + yjjZ NOLOHH_03640 0.31 +0.2 645,170 - yjjZ NOLOHH_03640 0.31 -0.2 645,191 - yjjZ NOLOHH_03640 0.40 -0.2 645,214 - yjjZ NOLOHH_03640 0.50 +0.8 645,253 - yjjZ NOLOHH_03640 0.66 +0.2 645,263 - yjjZ NOLOHH_03640 0.70 -0.2 645,263 - yjjZ NOLOHH_03640 0.70 -0.1 645,320 + +0.7 645,321 - +1.1 645,321 - +0.0 645,464 - -0.6 645,498 - +0.2 645,498 - +1.2 645,508 + -0.6 645,509 - +0.0 645,558 + fhuF NOLOHH_03645 0.11 -1.0 645,559 - fhuF NOLOHH_03645 0.11 -0.4 645,669 + fhuF NOLOHH_03645 0.25 -0.2 645,689 + fhuF NOLOHH_03645 0.27 -1.2 645,690 - fhuF NOLOHH_03645 0.28 -0.3 645,690 - fhuF NOLOHH_03645 0.28 -0.3 645,700 + fhuF NOLOHH_03645 0.29 +0.8 645,700 + fhuF NOLOHH_03645 0.29 -0.9 645,701 - fhuF NOLOHH_03645 0.29 +0.5 645,701 - fhuF NOLOHH_03645 0.29 +0.1 645,701 - fhuF NOLOHH_03645 0.29 +0.5 645,701 - fhuF NOLOHH_03645 0.29 +0.4 645,701 - fhuF NOLOHH_03645 0.29 -0.4 645,704 + fhuF NOLOHH_03645 0.29 +0.1 645,705 - fhuF NOLOHH_03645 0.29 +0.1 645,705 - fhuF NOLOHH_03645 0.29 -0.6 645,767 + fhuF NOLOHH_03645 0.37 -0.5 645,767 + fhuF NOLOHH_03645 0.37 +0.4 645,767 + fhuF NOLOHH_03645 0.37 -0.2 645,767 + fhuF NOLOHH_03645 0.37 -0.3 645,767 + fhuF NOLOHH_03645 0.37 +0.5 645,767 + fhuF NOLOHH_03645 0.37 +1.2 645,767 + fhuF NOLOHH_03645 0.37 -1.6 645,767 + fhuF NOLOHH_03645 0.37 +0.4 645,768 - fhuF NOLOHH_03645 0.37 -1.0 645,768 - fhuF NOLOHH_03645 0.37 -0.2 645,768 - fhuF NOLOHH_03645 0.37 -0.2 645,768 - fhuF NOLOHH_03645 0.37 +2.0 645,825 + fhuF NOLOHH_03645 0.45 +0.8 645,826 - fhuF NOLOHH_03645 0.45 +0.0 645,826 - fhuF NOLOHH_03645 0.45 -1.4 645,987 + fhuF NOLOHH_03645 0.65 -0.1 645,988 - fhuF NOLOHH_03645 0.65 -0.2 645,988 - fhuF NOLOHH_03645 0.65 +1.0 646,027 + fhuF NOLOHH_03645 0.70 -1.0 646,027 + fhuF NOLOHH_03645 0.70 -0.9 646,028 - fhuF NOLOHH_03645 0.70 +0.7 646,028 - fhuF NOLOHH_03645 0.70 -1.2 646,037 + fhuF NOLOHH_03645 0.71 +0.9 646,052 + fhuF NOLOHH_03645 0.73 -0.1 646,052 + fhuF NOLOHH_03645 0.73 -0.6 646,053 - fhuF NOLOHH_03645 0.74 -0.3 646,057 + fhuF NOLOHH_03645 0.74 +0.4 646,057 + fhuF NOLOHH_03645 0.74 -0.6 646,058 - fhuF NOLOHH_03645 0.74 -1.6 646,136 - fhuF NOLOHH_03645 0.84 -1.6 646,136 - fhuF NOLOHH_03645 0.84 +1.2 646,147 + fhuF NOLOHH_03645 0.85 -0.6 646,147 + fhuF NOLOHH_03645 0.85 -0.8 646,250 - -0.6 646,250 - +0.2 646,290 + -0.7 646,304 - +0.7 646,319 + +0.4 646,320 - +0.4 646,340 + +1.8 646,341 - -0.3 646,341 - +1.1 646,341 - -0.2 646,341 - -0.7 646,341 - -1.6 646,345 - +0.4 646,345 - -0.4 646,345 - -0.4 646,415 + bglJ NOLOHH_03650 0.17 -0.2 646,416 - bglJ NOLOHH_03650 0.17 -1.0 646,416 - bglJ NOLOHH_03650 0.17 +1.2 646,437 - bglJ NOLOHH_03650 0.20 -0.6 646,474 + bglJ NOLOHH_03650 0.26 +0.2 646,487 + bglJ NOLOHH_03650 0.28 -0.1 646,487 + bglJ NOLOHH_03650 0.28 +0.6 646,487 + bglJ NOLOHH_03650 0.28 -0.9 646,497 + bglJ NOLOHH_03650 0.29 +0.4 646,498 - bglJ NOLOHH_03650 0.29 +0.9 646,498 - bglJ NOLOHH_03650 0.29 -0.5 646,540 + bglJ NOLOHH_03650 0.36 -0.4 646,540 + bglJ NOLOHH_03650 0.36 -0.9 646,540 + bglJ NOLOHH_03650 0.36 +0.1 646,575 + bglJ NOLOHH_03650 0.41 -1.2 646,575 + bglJ NOLOHH_03650 0.41 -1.9 646,575 + bglJ NOLOHH_03650 0.41 -0.5 646,585 - bglJ NOLOHH_03650 0.42 -1.1 646,635 + bglJ NOLOHH_03650 0.50 +1.4 646,636 - bglJ NOLOHH_03650 0.50 +1.4 646,636 - bglJ NOLOHH_03650 0.50 +1.9 646,689 - bglJ NOLOHH_03650 0.58 +1.1 646,708 - bglJ NOLOHH_03650 0.60 +0.2 646,708 - bglJ NOLOHH_03650 0.60 -1.2 646,755 + bglJ NOLOHH_03650 0.67 -0.7 646,756 - bglJ NOLOHH_03650 0.67 +1.6 646,756 - bglJ NOLOHH_03650 0.67 +1.2 646,856 - bglJ NOLOHH_03650 0.82 +0.4 646,856 - bglJ NOLOHH_03650 0.82 -0.6 646,856 - bglJ NOLOHH_03650 0.82 +1.4 646,856 - bglJ NOLOHH_03650 0.82 +0.7 646,860 - bglJ NOLOHH_03650 0.83 +0.4 646,860 - bglJ NOLOHH_03650 0.83 +1.3 646,868 + bglJ NOLOHH_03650 0.84 +0.4 646,869 - bglJ NOLOHH_03650 0.84 +0.9 646,869 - bglJ NOLOHH_03650 0.84 +0.1 646,958 + -0.7 646,959 - -0.2 647,009 - yjjQ NOLOHH_03655 0.10 +1.4 647,009 - yjjQ NOLOHH_03655 0.10 +0.8 647,036 + yjjQ NOLOHH_03655 0.14 +0.3 647,037 - yjjQ NOLOHH_03655 0.14 -0.1 647,044 + yjjQ NOLOHH_03655 0.15 +1.0 647,047 - yjjQ NOLOHH_03655 0.16 -0.4 647,047 - yjjQ NOLOHH_03655 0.16 -0.8 647,047 - yjjQ NOLOHH_03655 0.16 +0.8 647,116 + yjjQ NOLOHH_03655 0.25 +0.8 647,166 - yjjQ NOLOHH_03655 0.32 -0.3 647,166 - yjjQ NOLOHH_03655 0.32 -0.8 647,169 - yjjQ NOLOHH_03655 0.32 -0.9 647,178 - yjjQ NOLOHH_03655 0.34 +2.4 647,219 - yjjQ NOLOHH_03655 0.39 -0.2
Or see this region's nucleotide sequence