Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjI and yjjW overlap by 29 nucleotides yjjW and yjjV are separated by 112 nucleotides yjjV and yjjU overlap by 4 nucleotides
NOLOHH_03570: yjjI - Uncharacterized protein YjjI, at 634,375 to 635,925
yjjI
NOLOHH_03575: yjjW - Putative glycyl-radical enzyme activating enzyme YjjW, at 635,897 to 636,760
yjjW
NOLOHH_03580: yjjV - metal-dependent hydrolase, at 636,873 to 637,655
yjjV
NOLOHH_03585: yjjU - Uncharacterized protein YjjU, at 637,652 to 638,725
yjjU
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2 at 634.946 kb on - strand, within yjjI at 634.946 kb on - strand, within yjjI at 635.044 kb on - strand, within yjjI at 635.083 kb on + strand, within yjjI at 635.178 kb on + strand, within yjjI at 635.189 kb on + strand, within yjjI at 635.271 kb on + strand, within yjjI at 635.332 kb on + strand, within yjjI at 635.332 kb on + strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.364 kb on + strand, within yjjI at 635.364 kb on + strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.614 kb on + strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.617 kb on + strand, within yjjI at 635.618 kb on - strand, within yjjI at 635.620 kb on + strand, within yjjI at 635.667 kb on + strand, within yjjI at 635.684 kb on + strand, within yjjI at 635.706 kb on + strand, within yjjI at 635.770 kb on + strand, within yjjI at 635.771 kb on - strand at 635.771 kb on - strand at 635.771 kb on - strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.866 kb on - strand at 635.923 kb on + strand at 635.924 kb on - strand at 635.924 kb on - strand at 636.206 kb on - strand, within yjjW at 636.232 kb on + strand, within yjjW at 636.298 kb on + strand, within yjjW at 636.298 kb on + strand, within yjjW at 636.359 kb on - strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.590 kb on - strand, within yjjW at 636.753 kb on - strand at 636.797 kb on + strand at 636.797 kb on + strand at 636.807 kb on - strand at 636.807 kb on - strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.905 kb on + strand at 636.905 kb on + strand at 636.906 kb on - strand at 636.908 kb on + strand at 636.908 kb on + strand at 636.908 kb on + strand at 636.909 kb on - strand at 636.909 kb on - strand at 636.909 kb on - strand at 636.909 kb on - strand at 637.025 kb on + strand, within yjjV at 637.091 kb on + strand, within yjjV at 637.112 kb on + strand, within yjjV at 637.113 kb on - strand, within yjjV at 637.113 kb on - strand, within yjjV at 637.146 kb on + strand, within yjjV at 637.279 kb on + strand, within yjjV at 637.279 kb on + strand, within yjjV at 637.413 kb on + strand, within yjjV at 637.414 kb on - strand, within yjjV at 637.436 kb on + strand, within yjjV at 637.478 kb on - strand, within yjjV at 637.478 kb on - strand, within yjjV at 637.489 kb on + strand, within yjjV at 637.557 kb on + strand, within yjjV at 637.604 kb on + strand at 637.672 kb on + strand at 637.673 kb on - strand at 637.673 kb on - strand at 637.673 kb on - strand at 637.673 kb on - strand at 637.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 634,946 - yjjI NOLOHH_03570 0.37 +0.3 634,946 - yjjI NOLOHH_03570 0.37 +0.1 635,044 - yjjI NOLOHH_03570 0.43 -1.0 635,083 + yjjI NOLOHH_03570 0.46 +0.2 635,178 + yjjI NOLOHH_03570 0.52 -1.2 635,189 + yjjI NOLOHH_03570 0.52 +0.1 635,271 + yjjI NOLOHH_03570 0.58 +0.4 635,332 + yjjI NOLOHH_03570 0.62 +0.7 635,332 + yjjI NOLOHH_03570 0.62 +0.2 635,333 - yjjI NOLOHH_03570 0.62 +0.1 635,333 - yjjI NOLOHH_03570 0.62 +2.0 635,333 - yjjI NOLOHH_03570 0.62 +0.4 635,333 - yjjI NOLOHH_03570 0.62 +1.1 635,333 - yjjI NOLOHH_03570 0.62 -1.6 635,333 - yjjI NOLOHH_03570 0.62 -0.3 635,364 + yjjI NOLOHH_03570 0.64 -0.6 635,364 + yjjI NOLOHH_03570 0.64 -0.2 635,365 - yjjI NOLOHH_03570 0.64 -0.2 635,365 - yjjI NOLOHH_03570 0.64 -0.6 635,365 - yjjI NOLOHH_03570 0.64 +1.3 635,473 + yjjI NOLOHH_03570 0.71 +0.4 635,473 + yjjI NOLOHH_03570 0.71 -0.2 635,473 + yjjI NOLOHH_03570 0.71 +0.3 635,473 + yjjI NOLOHH_03570 0.71 +0.2 635,473 + yjjI NOLOHH_03570 0.71 +0.1 635,614 + yjjI NOLOHH_03570 0.80 -0.1 635,615 - yjjI NOLOHH_03570 0.80 -1.3 635,615 - yjjI NOLOHH_03570 0.80 +0.0 635,615 - yjjI NOLOHH_03570 0.80 -0.4 635,615 - yjjI NOLOHH_03570 0.80 +0.4 635,617 + yjjI NOLOHH_03570 0.80 +2.0 635,618 - yjjI NOLOHH_03570 0.80 +0.0 635,620 + yjjI NOLOHH_03570 0.80 +1.2 635,667 + yjjI NOLOHH_03570 0.83 -0.0 635,684 + yjjI NOLOHH_03570 0.84 +0.4 635,706 + yjjI NOLOHH_03570 0.86 +0.0 635,770 + yjjI NOLOHH_03570 0.90 +0.1 635,771 - -0.7 635,771 - -0.7 635,771 - -0.0 635,772 + -0.1 635,772 + -0.5 635,772 + -0.3 635,772 + +0.4 635,772 + +0.6 635,773 - -0.1 635,773 - -0.7 635,773 - +0.8 635,773 - +0.3 635,866 - +0.4 635,923 + -0.4 635,924 - -0.7 635,924 - -0.2 636,206 - yjjW NOLOHH_03575 0.36 +0.4 636,232 + yjjW NOLOHH_03575 0.39 +0.4 636,298 + yjjW NOLOHH_03575 0.46 +0.4 636,298 + yjjW NOLOHH_03575 0.46 -0.1 636,359 - yjjW NOLOHH_03575 0.53 +0.1 636,557 + yjjW NOLOHH_03575 0.76 -0.5 636,557 + yjjW NOLOHH_03575 0.76 +0.5 636,557 + yjjW NOLOHH_03575 0.76 -2.4 636,558 - yjjW NOLOHH_03575 0.77 -0.3 636,558 - yjjW NOLOHH_03575 0.77 +0.4 636,558 - yjjW NOLOHH_03575 0.77 +0.3 636,590 - yjjW NOLOHH_03575 0.80 -0.4 636,753 - +0.0 636,797 + +1.0 636,797 + -0.1 636,807 - -0.2 636,807 - +0.1 636,898 + -0.2 636,898 + +1.2 636,898 + +0.9 636,898 + -0.2 636,899 - -0.8 636,899 - -0.4 636,899 - -1.2 636,899 - -0.6 636,902 + -0.7 636,902 + -0.6 636,902 + -0.2 636,902 + +0.6 636,902 + -0.7 636,903 - +0.4 636,903 - -0.5 636,903 - -0.1 636,903 - -0.2 636,903 - -0.9 636,903 - -1.2 636,905 + +1.2 636,905 + +0.1 636,906 - +1.6 636,908 + +1.0 636,908 + -0.1 636,908 + +0.4 636,909 - -1.2 636,909 - +0.8 636,909 - +0.1 636,909 - +0.6 637,025 + yjjV NOLOHH_03580 0.19 -1.2 637,091 + yjjV NOLOHH_03580 0.28 +0.2 637,112 + yjjV NOLOHH_03580 0.31 -0.2 637,113 - yjjV NOLOHH_03580 0.31 -0.4 637,113 - yjjV NOLOHH_03580 0.31 +0.4 637,146 + yjjV NOLOHH_03580 0.35 +0.4 637,279 + yjjV NOLOHH_03580 0.52 -0.4 637,279 + yjjV NOLOHH_03580 0.52 +0.0 637,413 + yjjV NOLOHH_03580 0.69 -0.8 637,414 - yjjV NOLOHH_03580 0.69 +1.0 637,436 + yjjV NOLOHH_03580 0.72 -1.9 637,478 - yjjV NOLOHH_03580 0.77 -0.0 637,478 - yjjV NOLOHH_03580 0.77 -0.4 637,489 + yjjV NOLOHH_03580 0.79 +1.0 637,557 + yjjV NOLOHH_03580 0.87 +0.3 637,604 + +0.4 637,672 + -0.0 637,673 - +0.5 637,673 - -1.2 637,673 - +0.1 637,673 - +0.2 637,673 - +0.4
Or see this region's nucleotide sequence