Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lasT and arcA are separated by 635 nucleotides arcA and creD are separated by 59 nucleotides
NOLOHH_03450: lasT - tRNA/rRNA methyltransferase, at 609,659 to 610,345
lasT
NOLOHH_03455: arcA - two-component system response regulator ArcA, at 610,981 to 611,697
arcA
NOLOHH_03460: creD - cell envelope integrity protein CreD, at 611,757 to 613,109
creD
Position (kb) 610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.052 kb on + strand, within lasT at 610.070 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.087 kb on - strand, within lasT at 610.087 kb on - strand, within lasT at 610.087 kb on - strand, within lasT at 610.092 kb on + strand, within lasT at 610.092 kb on + strand, within lasT at 610.184 kb on - strand, within lasT at 610.339 kb on + strand at 610.339 kb on + strand at 610.339 kb on + strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.431 kb on + strand at 610.456 kb on + strand at 610.457 kb on - strand at 610.457 kb on - strand at 610.501 kb on - strand at 610.501 kb on - strand at 610.521 kb on + strand at 610.589 kb on + strand at 610.589 kb on + strand at 610.589 kb on + strand at 610.595 kb on + strand at 610.595 kb on + strand at 610.646 kb on - strand at 610.650 kb on - strand at 610.694 kb on + strand at 610.694 kb on + strand at 610.696 kb on + strand at 610.696 kb on + strand at 610.810 kb on + strand at 610.825 kb on + strand at 610.826 kb on - strand at 610.870 kb on + strand at 610.874 kb on + strand at 610.874 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.940 kb on + strand at 610.940 kb on + strand at 610.957 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.789 kb on + strand at 611.790 kb on - strand at 611.790 kb on - strand at 611.790 kb on - strand at 611.830 kb on + strand at 611.830 kb on + strand at 611.843 kb on + strand at 611.844 kb on - strand at 611.966 kb on + strand, within creD at 612.011 kb on - strand, within creD at 612.011 kb on - strand, within creD at 612.014 kb on + strand, within creD at 612.072 kb on - strand, within creD at 612.100 kb on + strand, within creD at 612.101 kb on - strand, within creD at 612.133 kb on + strand, within creD at 612.134 kb on - strand, within creD at 612.136 kb on - strand, within creD at 612.148 kb on - strand, within creD at 612.188 kb on + strand, within creD at 612.245 kb on - strand, within creD at 612.335 kb on + strand, within creD at 612.336 kb on - strand, within creD at 612.414 kb on + strand, within creD at 612.415 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.515 kb on + strand, within creD at 612.653 kb on + strand, within creD at 612.684 kb on - strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 610,052 + lasT NOLOHH_03450 0.57 +0.2 610,070 + lasT NOLOHH_03450 0.60 -0.8 610,086 + lasT NOLOHH_03450 0.62 -1.2 610,086 + lasT NOLOHH_03450 0.62 +0.8 610,086 + lasT NOLOHH_03450 0.62 -2.0 610,086 + lasT NOLOHH_03450 0.62 -0.8 610,087 - lasT NOLOHH_03450 0.62 +0.2 610,087 - lasT NOLOHH_03450 0.62 -0.7 610,087 - lasT NOLOHH_03450 0.62 +0.9 610,092 + lasT NOLOHH_03450 0.63 -0.2 610,092 + lasT NOLOHH_03450 0.63 -2.2 610,184 - lasT NOLOHH_03450 0.76 +0.2 610,339 + -0.1 610,339 + -1.3 610,339 + -0.6 610,340 - +0.8 610,340 - +0.5 610,340 - +0.8 610,340 - +0.6 610,431 + +0.8 610,456 + -0.8 610,457 - -0.1 610,457 - -0.6 610,501 - +0.3 610,501 - +0.8 610,521 + -0.6 610,589 + +0.1 610,589 + +0.6 610,589 + +0.1 610,595 + +1.3 610,595 + -0.4 610,646 - +1.2 610,650 - -0.6 610,694 + -0.9 610,694 + -1.0 610,696 + +1.0 610,696 + +0.4 610,810 + +2.0 610,825 + -0.5 610,826 - -0.6 610,870 + -0.6 610,874 + -0.6 610,874 + -0.4 610,902 + +0.2 610,902 + +0.7 610,940 + -2.9 610,940 + -0.6 610,957 + -1.6 611,772 + +1.2 611,772 + +0.4 611,772 + -0.3 611,772 + +0.7 611,772 + +2.4 611,773 - -0.6 611,773 - -0.1 611,773 - +1.8 611,773 - -0.4 611,773 - +0.4 611,789 + -0.2 611,790 - -1.3 611,790 - -0.3 611,790 - -1.2 611,830 + -2.0 611,830 + -0.4 611,843 + -0.2 611,844 - +0.0 611,966 + creD NOLOHH_03460 0.15 -1.0 612,011 - creD NOLOHH_03460 0.19 +0.8 612,011 - creD NOLOHH_03460 0.19 +0.4 612,014 + creD NOLOHH_03460 0.19 +1.2 612,072 - creD NOLOHH_03460 0.23 +0.6 612,100 + creD NOLOHH_03460 0.25 +0.7 612,101 - creD NOLOHH_03460 0.25 +1.4 612,133 + creD NOLOHH_03460 0.28 -0.6 612,134 - creD NOLOHH_03460 0.28 +0.3 612,136 - creD NOLOHH_03460 0.28 -0.2 612,148 - creD NOLOHH_03460 0.29 +2.8 612,188 + creD NOLOHH_03460 0.32 +0.8 612,245 - creD NOLOHH_03460 0.36 +0.3 612,335 + creD NOLOHH_03460 0.43 +0.8 612,336 - creD NOLOHH_03460 0.43 -1.0 612,414 + creD NOLOHH_03460 0.49 +0.6 612,415 - creD NOLOHH_03460 0.49 +0.4 612,462 - creD NOLOHH_03460 0.52 -1.2 612,462 - creD NOLOHH_03460 0.52 -1.7 612,515 + creD NOLOHH_03460 0.56 +0.8 612,653 + creD NOLOHH_03460 0.66 -0.6 612,684 - creD NOLOHH_03460 0.69 +0.4 612,696 + creD NOLOHH_03460 0.69 -0.4 612,696 + creD NOLOHH_03460 0.69 -0.9 612,696 + creD NOLOHH_03460 0.69 +0.8
Or see this region's nucleotide sequence