Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03330

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_03325 and NOLOHH_03330 are separated by 374 nucleotidesNOLOHH_03330 and NOLOHH_03335 are separated by 432 nucleotides NOLOHH_03325: NOLOHH_03325 - hypothetical protein, at 587,356 to 587,745 _03325 NOLOHH_03330: NOLOHH_03330 - T3SS effector EspX, at 588,120 to 588,776 _03330 NOLOHH_03335: NOLOHH_03335 - Fimbrial protein, at 589,209 to 590,354 _03335 Position (kb) 588 589Strain fitness (log2 ratio) -2 -1 0 1at 587.180 kb on - strandat 587.227 kb on - strandat 587.227 kb on - strandat 587.946 kb on - strandat 588.420 kb on + strand, within NOLOHH_03330at 588.638 kb on - strand, within NOLOHH_03330at 589.044 kb on + strandat 589.052 kb on + strandat 589.054 kb on + strandat 589.159 kb on - strandat 589.175 kb on + strandat 589.176 kb on - strandat 589.184 kb on - strandat 589.206 kb on - strandat 589.224 kb on + strandat 589.379 kb on - strand, within NOLOHH_03335at 589.772 kb on - strand, within NOLOHH_03335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
587,180 - +0.8
587,227 - +1.4
587,227 - +1.4
587,946 - +0.1
588,420 + NOLOHH_03330 0.46 -0.6
588,638 - NOLOHH_03330 0.79 -1.2
589,044 + -1.2
589,052 + +0.1
589,054 + +1.0
589,159 - -1.9
589,175 + +0.4
589,176 - +0.8
589,184 - +0.8
589,206 - -0.1
589,224 + -0.3
589,379 - NOLOHH_03335 0.15 -1.2
589,772 - NOLOHH_03335 0.49 +1.0

Or see this region's nucleotide sequence