Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03325

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsT and NOLOHH_03325 are separated by 482 nucleotidesNOLOHH_03325 and NOLOHH_03330 are separated by 374 nucleotides NOLOHH_03320: rpsT - 30S ribosomal protein S20, at 586,610 to 586,873 rpsT NOLOHH_03325: NOLOHH_03325 - hypothetical protein, at 587,356 to 587,745 _03325 NOLOHH_03330: NOLOHH_03330 - T3SS effector EspX, at 588,120 to 588,776 _03330 Position (kb) 587 588Strain fitness (log2 ratio) -1 0 1at 586.468 kb on - strandat 586.487 kb on - strandat 586.519 kb on - strandat 586.519 kb on - strandat 586.924 kb on + strandat 587.012 kb on + strandat 587.013 kb on - strandat 587.013 kb on - strandat 587.016 kb on - strandat 587.035 kb on + strandat 587.078 kb on - strandat 587.180 kb on - strandat 587.227 kb on - strandat 587.227 kb on - strandat 587.946 kb on - strandat 588.420 kb on + strand, within NOLOHH_03330at 588.638 kb on - strand, within NOLOHH_03330

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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586,468 - +0.4
586,487 - +0.4
586,519 - +0.1
586,519 - -0.2
586,924 + +0.4
587,012 + -0.6
587,013 - +0.0
587,013 - +0.7
587,016 - +0.4
587,035 + -0.1
587,078 - -0.3
587,180 - +0.8
587,227 - +1.4
587,227 - +1.4
587,946 - +0.1
588,420 + NOLOHH_03330 0.46 -0.6
588,638 - NOLOHH_03330 0.79 -1.2

Or see this region's nucleotide sequence