Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03320

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntribF and rpsT are separated by 328 nucleotidesrpsT and NOLOHH_03325 are separated by 482 nucleotides NOLOHH_03315: ribF - bifunctional riboflavin kinase/FAD synthetase, at 585,340 to 586,281 ribF NOLOHH_03320: rpsT - 30S ribosomal protein S20, at 586,610 to 586,873 rpsT NOLOHH_03325: NOLOHH_03325 - hypothetical protein, at 587,356 to 587,745 _03325 Position (kb) 586 587Strain fitness (log2 ratio) -1 0 1at 586.316 kb on - strandat 586.316 kb on - strandat 586.323 kb on - strandat 586.323 kb on - strandat 586.323 kb on - strandat 586.468 kb on - strandat 586.487 kb on - strandat 586.519 kb on - strandat 586.519 kb on - strandat 586.924 kb on + strandat 587.012 kb on + strandat 587.013 kb on - strandat 587.013 kb on - strandat 587.016 kb on - strandat 587.035 kb on + strandat 587.078 kb on - strandat 587.180 kb on - strandat 587.227 kb on - strandat 587.227 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
586,316 - -0.6
586,316 - -0.6
586,323 - +0.1
586,323 - +1.4
586,323 - +0.0
586,468 - +0.4
586,487 - +0.4
586,519 - +0.1
586,519 - -0.2
586,924 + +0.4
587,012 + -0.6
587,013 - +0.0
587,013 - +0.7
587,016 - +0.4
587,035 + -0.1
587,078 - -0.3
587,180 - +0.8
587,227 - +1.4
587,227 - +1.4

Or see this region's nucleotide sequence