Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt djlA and lptD are separated by 254 nucleotides lptD and surA are separated by 52 nucleotides
NOLOHH_03160: djlA - co-chaperone DjlA, at 549,544 to 550,359
djlA
NOLOHH_03165: lptD - LPS assembly protein LptD, at 550,614 to 552,968
lptD
NOLOHH_03170: surA - peptidylprolyl isomerase SurA, at 553,021 to 554,307
surA
Position (kb) 550
551
552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.738 kb on + strand, within djlA at 549.739 kb on - strand, within djlA at 549.739 kb on - strand, within djlA at 549.739 kb on - strand, within djlA at 549.739 kb on - strand, within djlA at 549.784 kb on - strand, within djlA at 549.784 kb on - strand, within djlA at 549.891 kb on + strand, within djlA at 549.892 kb on - strand, within djlA at 549.896 kb on + strand, within djlA at 549.897 kb on - strand, within djlA at 549.897 kb on - strand, within djlA at 549.897 kb on - strand, within djlA at 549.897 kb on - strand, within djlA at 549.897 kb on - strand, within djlA at 549.969 kb on + strand, within djlA at 549.976 kb on + strand, within djlA at 549.977 kb on - strand, within djlA at 549.977 kb on - strand, within djlA at 550.035 kb on - strand, within djlA at 550.166 kb on - strand, within djlA at 550.257 kb on + strand, within djlA at 550.266 kb on + strand, within djlA at 550.266 kb on + strand, within djlA at 550.267 kb on - strand, within djlA at 550.267 kb on - strand, within djlA at 550.267 kb on - strand, within djlA at 550.267 kb on - strand, within djlA at 550.277 kb on - strand, within djlA at 550.285 kb on + strand at 550.291 kb on + strand at 550.319 kb on - strand at 550.352 kb on + strand at 550.359 kb on + strand at 550.359 kb on + strand at 550.359 kb on + strand at 550.359 kb on + strand at 550.359 kb on + strand at 550.360 kb on - strand at 550.360 kb on - strand at 550.360 kb on - strand at 550.360 kb on - strand at 550.361 kb on + strand at 550.361 kb on + strand at 550.361 kb on + strand at 550.361 kb on + strand at 550.361 kb on + strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.362 kb on - strand at 550.393 kb on + strand at 550.394 kb on - strand at 550.405 kb on + strand at 550.405 kb on + strand at 550.405 kb on + strand at 550.405 kb on + strand at 550.406 kb on - strand at 550.406 kb on - strand at 550.407 kb on + strand at 550.407 kb on + strand at 550.407 kb on + strand at 550.408 kb on - strand at 550.408 kb on - strand at 550.408 kb on - strand at 550.420 kb on - strand at 550.457 kb on + strand at 550.459 kb on + strand at 550.460 kb on - strand at 550.470 kb on - strand at 550.470 kb on - strand at 550.474 kb on + strand at 550.474 kb on + strand at 550.475 kb on - strand at 550.475 kb on - strand at 550.475 kb on - strand at 550.475 kb on - strand at 550.475 kb on - strand at 550.475 kb on - strand at 550.526 kb on + strand at 550.527 kb on - strand at 550.550 kb on + strand at 550.555 kb on + strand at 550.603 kb on - strand at 552.906 kb on + strand at 552.906 kb on + strand at 552.987 kb on - strand at 552.987 kb on - strand at 553.020 kb on + strand at 553.021 kb on - strand at 553.323 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.403 kb on - strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.660 kb on - strand, within surA at 553.857 kb on + strand, within surA at 553.857 kb on + strand, within surA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 549,738 + djlA NOLOHH_03160 0.24 +0.4 549,739 - djlA NOLOHH_03160 0.24 +1.2 549,739 - djlA NOLOHH_03160 0.24 -2.2 549,739 - djlA NOLOHH_03160 0.24 +0.4 549,739 - djlA NOLOHH_03160 0.24 -0.2 549,784 - djlA NOLOHH_03160 0.29 +0.4 549,784 - djlA NOLOHH_03160 0.29 +0.4 549,891 + djlA NOLOHH_03160 0.43 -0.5 549,892 - djlA NOLOHH_03160 0.43 +0.3 549,896 + djlA NOLOHH_03160 0.43 +0.0 549,897 - djlA NOLOHH_03160 0.43 -0.2 549,897 - djlA NOLOHH_03160 0.43 -0.1 549,897 - djlA NOLOHH_03160 0.43 +0.2 549,897 - djlA NOLOHH_03160 0.43 +0.1 549,897 - djlA NOLOHH_03160 0.43 -0.7 549,969 + djlA NOLOHH_03160 0.52 +1.3 549,976 + djlA NOLOHH_03160 0.53 +0.4 549,977 - djlA NOLOHH_03160 0.53 -1.3 549,977 - djlA NOLOHH_03160 0.53 +0.3 550,035 - djlA NOLOHH_03160 0.60 -1.1 550,166 - djlA NOLOHH_03160 0.76 +0.0 550,257 + djlA NOLOHH_03160 0.87 +0.4 550,266 + djlA NOLOHH_03160 0.88 +0.1 550,266 + djlA NOLOHH_03160 0.88 +0.0 550,267 - djlA NOLOHH_03160 0.89 -1.7 550,267 - djlA NOLOHH_03160 0.89 -0.3 550,267 - djlA NOLOHH_03160 0.89 +0.4 550,267 - djlA NOLOHH_03160 0.89 -0.6 550,277 - djlA NOLOHH_03160 0.90 +0.2 550,285 + +0.4 550,291 + +0.4 550,319 - -0.2 550,352 + +0.1 550,359 + +2.0 550,359 + -2.4 550,359 + -0.3 550,359 + +0.4 550,359 + +0.4 550,360 - +0.1 550,360 - +0.2 550,360 - -1.9 550,360 - +0.4 550,361 + +0.8 550,361 + -0.9 550,361 + +0.4 550,361 + -0.6 550,361 + -1.6 550,362 - -0.5 550,362 - +0.2 550,362 - -0.7 550,362 - -0.3 550,362 - -0.9 550,362 - +0.1 550,362 - +0.0 550,393 + -0.6 550,394 - -1.2 550,405 + -1.0 550,405 + +1.0 550,405 + +0.4 550,405 + -0.3 550,406 - +0.5 550,406 - +1.2 550,407 + -1.7 550,407 + +2.0 550,407 + -0.3 550,408 - +0.6 550,408 - +1.3 550,408 - +0.5 550,420 - -0.7 550,457 + -0.3 550,459 + +1.2 550,460 - +1.0 550,470 - -0.2 550,470 - +0.1 550,474 + +1.0 550,474 + -1.2 550,475 - -0.6 550,475 - -0.7 550,475 - -0.1 550,475 - +0.4 550,475 - -1.2 550,475 - -0.9 550,526 + -1.3 550,527 - +0.4 550,550 + +1.0 550,555 + +0.3 550,603 - +0.9 552,906 + +0.4 552,906 + -0.3 552,987 - -0.6 552,987 - -0.2 553,020 + +1.4 553,021 - +0.4 553,323 + surA NOLOHH_03170 0.23 +0.4 553,393 + surA NOLOHH_03170 0.29 +0.4 553,393 + surA NOLOHH_03170 0.29 +0.4 553,402 + surA NOLOHH_03170 0.30 -1.6 553,402 + surA NOLOHH_03170 0.30 -0.6 553,402 + surA NOLOHH_03170 0.30 -1.9 553,403 - surA NOLOHH_03170 0.30 -0.6 553,431 + surA NOLOHH_03170 0.32 +0.4 553,431 + surA NOLOHH_03170 0.32 +0.4 553,431 + surA NOLOHH_03170 0.32 +0.4 553,660 - surA NOLOHH_03170 0.50 -1.2 553,857 + surA NOLOHH_03170 0.65 -1.6 553,857 + surA NOLOHH_03170 0.65 +0.0
Or see this region's nucleotide sequence