Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdhR and aroP are separated by 543 nucleotides aroP and ampE are separated by 42 nucleotides ampE and ampD overlap by 4 nucleotides
NOLOHH_02855: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 486,490 to 487,254
pdhR
NOLOHH_02860: aroP - aromatic amino acid transporter AroP, at 487,798 to 489,168
aroP
NOLOHH_02865: ampE - beta-lactamase regulator AmpE, at 489,211 to 490,065
ampE
NOLOHH_02870: ampD - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 490,062 to 490,613
ampD
Position (kb) 487
488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 486.898 kb on - strand, within pdhR at 486.898 kb on - strand, within pdhR at 486.901 kb on - strand, within pdhR at 486.963 kb on - strand, within pdhR at 486.963 kb on - strand, within pdhR at 486.963 kb on - strand, within pdhR at 486.963 kb on - strand, within pdhR at 486.963 kb on - strand, within pdhR at 487.340 kb on + strand at 487.386 kb on + strand at 487.401 kb on + strand at 487.401 kb on + strand at 487.402 kb on - strand at 487.423 kb on + strand at 487.602 kb on + strand at 487.628 kb on - strand at 487.628 kb on - strand at 487.762 kb on + strand at 487.763 kb on - strand at 487.827 kb on - strand at 487.860 kb on + strand at 487.913 kb on + strand at 487.916 kb on + strand at 487.917 kb on - strand at 487.917 kb on - strand at 488.031 kb on + strand, within aroP at 488.044 kb on + strand, within aroP at 488.044 kb on + strand, within aroP at 488.047 kb on - strand, within aroP at 488.050 kb on + strand, within aroP at 488.050 kb on + strand, within aroP at 488.051 kb on - strand, within aroP at 488.051 kb on - strand, within aroP at 488.108 kb on + strand, within aroP at 488.143 kb on + strand, within aroP at 488.143 kb on + strand, within aroP at 488.144 kb on - strand, within aroP at 488.144 kb on - strand, within aroP at 488.144 kb on - strand, within aroP at 488.288 kb on + strand, within aroP at 488.318 kb on + strand, within aroP at 488.493 kb on + strand, within aroP at 488.493 kb on + strand, within aroP at 488.493 kb on + strand, within aroP at 488.493 kb on + strand, within aroP at 488.493 kb on + strand, within aroP at 488.509 kb on - strand, within aroP at 488.539 kb on + strand, within aroP at 488.630 kb on + strand, within aroP at 488.637 kb on + strand, within aroP at 488.692 kb on + strand, within aroP at 488.705 kb on + strand, within aroP at 488.705 kb on + strand, within aroP at 488.705 kb on + strand, within aroP at 488.705 kb on + strand, within aroP at 488.706 kb on - strand, within aroP at 488.706 kb on - strand, within aroP at 488.706 kb on - strand, within aroP at 488.706 kb on - strand, within aroP at 488.721 kb on + strand, within aroP at 488.721 kb on + strand, within aroP at 488.722 kb on - strand, within aroP at 488.749 kb on - strand, within aroP at 488.789 kb on + strand, within aroP at 488.790 kb on - strand, within aroP at 488.795 kb on + strand, within aroP at 488.796 kb on - strand, within aroP at 488.799 kb on + strand, within aroP at 488.799 kb on + strand, within aroP at 488.799 kb on + strand, within aroP at 488.799 kb on + strand, within aroP at 488.800 kb on - strand, within aroP at 488.800 kb on - strand, within aroP at 488.800 kb on - strand, within aroP at 488.845 kb on - strand, within aroP at 488.845 kb on - strand, within aroP at 488.848 kb on + strand, within aroP at 488.848 kb on + strand, within aroP at 488.849 kb on - strand, within aroP at 488.849 kb on - strand, within aroP at 488.976 kb on - strand, within aroP at 489.042 kb on - strand at 489.051 kb on + strand at 489.052 kb on - strand at 489.083 kb on + strand at 489.085 kb on + strand at 489.085 kb on + strand at 489.085 kb on + strand at 489.085 kb on + strand at 489.085 kb on + strand at 489.086 kb on - strand at 489.086 kb on - strand at 489.086 kb on - strand at 489.113 kb on + strand at 489.113 kb on + strand at 489.166 kb on + strand at 489.167 kb on - strand at 489.190 kb on - strand at 489.205 kb on + strand at 489.205 kb on + strand at 489.238 kb on + strand at 489.239 kb on - strand at 489.378 kb on + strand, within ampE at 489.378 kb on + strand, within ampE at 489.379 kb on - strand, within ampE at 489.443 kb on + strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.444 kb on - strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.445 kb on + strand, within ampE at 489.446 kb on - strand, within ampE at 489.511 kb on + strand, within ampE at 489.512 kb on - strand, within ampE at 489.512 kb on - strand, within ampE at 489.512 kb on - strand, within ampE at 489.549 kb on - strand, within ampE at 489.683 kb on + strand, within ampE at 489.684 kb on - strand, within ampE at 489.684 kb on - strand, within ampE at 489.765 kb on + strand, within ampE at 489.766 kb on - strand, within ampE at 489.766 kb on - strand, within ampE at 489.766 kb on - strand, within ampE at 489.786 kb on - strand, within ampE at 489.786 kb on - strand, within ampE at 489.810 kb on + strand, within ampE at 489.811 kb on - strand, within ampE at 489.874 kb on + strand, within ampE at 489.874 kb on + strand, within ampE at 489.874 kb on + strand, within ampE at 489.875 kb on - strand, within ampE at 489.898 kb on + strand, within ampE at 489.922 kb on - strand, within ampE at 490.045 kb on + strand at 490.046 kb on - strand at 490.046 kb on - strand at 490.053 kb on + strand at 490.053 kb on + strand at 490.053 kb on + strand at 490.057 kb on + strand at 490.057 kb on + strand at 490.058 kb on - strand at 490.058 kb on - strand at 490.058 kb on - strand at 490.146 kb on - strand, within ampD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 486,898 - pdhR NOLOHH_02855 0.53 +0.4 486,898 - pdhR NOLOHH_02855 0.53 -0.3 486,901 - pdhR NOLOHH_02855 0.54 +0.4 486,963 - pdhR NOLOHH_02855 0.62 -0.6 486,963 - pdhR NOLOHH_02855 0.62 -1.8 486,963 - pdhR NOLOHH_02855 0.62 -0.6 486,963 - pdhR NOLOHH_02855 0.62 -0.5 486,963 - pdhR NOLOHH_02855 0.62 +1.0 487,340 + +0.4 487,386 + +1.0 487,401 + +0.6 487,401 + +0.0 487,402 - +0.3 487,423 + +0.6 487,602 + -2.2 487,628 - -0.6 487,628 - -0.4 487,762 + +0.1 487,763 - -0.4 487,827 - +0.1 487,860 + -0.1 487,913 + +0.1 487,916 + -1.6 487,917 - -0.1 487,917 - -0.8 488,031 + aroP NOLOHH_02860 0.17 +2.0 488,044 + aroP NOLOHH_02860 0.18 -0.6 488,044 + aroP NOLOHH_02860 0.18 +0.4 488,047 - aroP NOLOHH_02860 0.18 +2.4 488,050 + aroP NOLOHH_02860 0.18 +0.2 488,050 + aroP NOLOHH_02860 0.18 -0.3 488,051 - aroP NOLOHH_02860 0.18 -0.1 488,051 - aroP NOLOHH_02860 0.18 +0.2 488,108 + aroP NOLOHH_02860 0.23 -3.2 488,143 + aroP NOLOHH_02860 0.25 -0.1 488,143 + aroP NOLOHH_02860 0.25 +0.1 488,144 - aroP NOLOHH_02860 0.25 -0.3 488,144 - aroP NOLOHH_02860 0.25 -0.7 488,144 - aroP NOLOHH_02860 0.25 +0.7 488,288 + aroP NOLOHH_02860 0.36 -1.0 488,318 + aroP NOLOHH_02860 0.38 -0.6 488,493 + aroP NOLOHH_02860 0.51 +0.3 488,493 + aroP NOLOHH_02860 0.51 +1.0 488,493 + aroP NOLOHH_02860 0.51 -1.9 488,493 + aroP NOLOHH_02860 0.51 +0.1 488,493 + aroP NOLOHH_02860 0.51 -0.4 488,509 - aroP NOLOHH_02860 0.52 +1.2 488,539 + aroP NOLOHH_02860 0.54 +0.2 488,630 + aroP NOLOHH_02860 0.61 +0.8 488,637 + aroP NOLOHH_02860 0.61 +1.4 488,692 + aroP NOLOHH_02860 0.65 -0.1 488,705 + aroP NOLOHH_02860 0.66 -0.2 488,705 + aroP NOLOHH_02860 0.66 +0.7 488,705 + aroP NOLOHH_02860 0.66 +1.0 488,705 + aroP NOLOHH_02860 0.66 -0.8 488,706 - aroP NOLOHH_02860 0.66 -0.2 488,706 - aroP NOLOHH_02860 0.66 -0.6 488,706 - aroP NOLOHH_02860 0.66 -0.2 488,706 - aroP NOLOHH_02860 0.66 -0.0 488,721 + aroP NOLOHH_02860 0.67 -1.4 488,721 + aroP NOLOHH_02860 0.67 -1.4 488,722 - aroP NOLOHH_02860 0.67 +0.8 488,749 - aroP NOLOHH_02860 0.69 +0.8 488,789 + aroP NOLOHH_02860 0.72 +0.8 488,790 - aroP NOLOHH_02860 0.72 +0.4 488,795 + aroP NOLOHH_02860 0.73 -1.2 488,796 - aroP NOLOHH_02860 0.73 +0.2 488,799 + aroP NOLOHH_02860 0.73 +0.4 488,799 + aroP NOLOHH_02860 0.73 -0.0 488,799 + aroP NOLOHH_02860 0.73 -0.4 488,799 + aroP NOLOHH_02860 0.73 -0.1 488,800 - aroP NOLOHH_02860 0.73 +0.2 488,800 - aroP NOLOHH_02860 0.73 -0.9 488,800 - aroP NOLOHH_02860 0.73 -0.2 488,845 - aroP NOLOHH_02860 0.76 -0.0 488,845 - aroP NOLOHH_02860 0.76 -0.3 488,848 + aroP NOLOHH_02860 0.77 -0.2 488,848 + aroP NOLOHH_02860 0.77 +0.1 488,849 - aroP NOLOHH_02860 0.77 +1.0 488,849 - aroP NOLOHH_02860 0.77 -0.2 488,976 - aroP NOLOHH_02860 0.86 -0.4 489,042 - -0.7 489,051 + +1.4 489,052 - -0.3 489,083 + -0.3 489,085 + +0.4 489,085 + -0.1 489,085 + -1.3 489,085 + +0.4 489,085 + -0.7 489,086 - -0.1 489,086 - -0.2 489,086 - +0.4 489,113 + +0.8 489,113 + +0.7 489,166 + -0.3 489,167 - -1.0 489,190 - +1.4 489,205 + -0.2 489,205 + -0.9 489,238 + -0.2 489,239 - +1.4 489,378 + ampE NOLOHH_02865 0.20 -0.6 489,378 + ampE NOLOHH_02865 0.20 +1.7 489,379 - ampE NOLOHH_02865 0.20 +2.0 489,443 + ampE NOLOHH_02865 0.27 -0.1 489,444 - ampE NOLOHH_02865 0.27 +0.7 489,444 - ampE NOLOHH_02865 0.27 +1.6 489,444 - ampE NOLOHH_02865 0.27 +1.0 489,444 - ampE NOLOHH_02865 0.27 +0.8 489,444 - ampE NOLOHH_02865 0.27 +0.8 489,444 - ampE NOLOHH_02865 0.27 +0.4 489,444 - ampE NOLOHH_02865 0.27 +0.4 489,444 - ampE NOLOHH_02865 0.27 -0.4 489,445 + ampE NOLOHH_02865 0.27 -0.6 489,445 + ampE NOLOHH_02865 0.27 -1.0 489,445 + ampE NOLOHH_02865 0.27 -0.7 489,445 + ampE NOLOHH_02865 0.27 -0.6 489,445 + ampE NOLOHH_02865 0.27 -1.0 489,445 + ampE NOLOHH_02865 0.27 +1.7 489,445 + ampE NOLOHH_02865 0.27 -0.6 489,445 + ampE NOLOHH_02865 0.27 +0.2 489,445 + ampE NOLOHH_02865 0.27 -0.9 489,446 - ampE NOLOHH_02865 0.27 +0.9 489,511 + ampE NOLOHH_02865 0.35 -0.3 489,512 - ampE NOLOHH_02865 0.35 +0.7 489,512 - ampE NOLOHH_02865 0.35 -0.3 489,512 - ampE NOLOHH_02865 0.35 -0.3 489,549 - ampE NOLOHH_02865 0.40 -0.6 489,683 + ampE NOLOHH_02865 0.55 +2.4 489,684 - ampE NOLOHH_02865 0.55 -0.6 489,684 - ampE NOLOHH_02865 0.55 +1.4 489,765 + ampE NOLOHH_02865 0.65 +0.3 489,766 - ampE NOLOHH_02865 0.65 -0.9 489,766 - ampE NOLOHH_02865 0.65 +1.7 489,766 - ampE NOLOHH_02865 0.65 +0.1 489,786 - ampE NOLOHH_02865 0.67 -0.3 489,786 - ampE NOLOHH_02865 0.67 -2.3 489,810 + ampE NOLOHH_02865 0.70 -0.6 489,811 - ampE NOLOHH_02865 0.70 -0.6 489,874 + ampE NOLOHH_02865 0.78 -0.0 489,874 + ampE NOLOHH_02865 0.78 -1.2 489,874 + ampE NOLOHH_02865 0.78 -1.0 489,875 - ampE NOLOHH_02865 0.78 -0.6 489,898 + ampE NOLOHH_02865 0.80 +0.2 489,922 - ampE NOLOHH_02865 0.83 -0.2 490,045 + -1.2 490,046 - +0.6 490,046 - +0.3 490,053 + +0.2 490,053 + -1.0 490,053 + -0.5 490,057 + -1.4 490,057 + -1.6 490,058 - -0.1 490,058 - +0.7 490,058 - -0.8 490,146 - ampD NOLOHH_02870 0.15 +0.7
Or see this region's nucleotide sequence