Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02855

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaceE and pdhR are separated by 160 nucleotidespdhR and aroP are separated by 543 nucleotides NOLOHH_02845: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 483,666 to 486,329 aceE NOLOHH_02855: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 486,490 to 487,254 pdhR NOLOHH_02860: aroP - aromatic amino acid transporter AroP, at 487,798 to 489,168 aroP Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 485.977 kb on + strand, within aceEat 486.628 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.658 kb on - strand, within pdhRat 486.689 kb on + strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.898 kb on - strand, within pdhRat 486.898 kb on - strand, within pdhRat 486.901 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 487.340 kb on + strandat 487.386 kb on + strandat 487.401 kb on + strandat 487.401 kb on + strandat 487.402 kb on - strandat 487.423 kb on + strandat 487.602 kb on + strandat 487.628 kb on - strandat 487.628 kb on - strandat 487.762 kb on + strandat 487.763 kb on - strandat 487.827 kb on - strandat 487.860 kb on + strandat 487.913 kb on + strandat 487.916 kb on + strandat 487.917 kb on - strandat 487.917 kb on - strandat 488.031 kb on + strand, within aroPat 488.044 kb on + strand, within aroPat 488.044 kb on + strand, within aroPat 488.047 kb on - strand, within aroPat 488.050 kb on + strand, within aroPat 488.050 kb on + strand, within aroPat 488.051 kb on - strand, within aroPat 488.051 kb on - strand, within aroPat 488.108 kb on + strand, within aroPat 488.143 kb on + strand, within aroPat 488.143 kb on + strand, within aroPat 488.144 kb on - strand, within aroPat 488.144 kb on - strand, within aroPat 488.144 kb on - strand, within aroP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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485,977 + aceE NOLOHH_02845 0.87 +1.4
486,628 - pdhR NOLOHH_02855 0.18 -0.6
486,641 - pdhR NOLOHH_02855 0.20 +0.0
486,641 - pdhR NOLOHH_02855 0.20 +0.1
486,641 - pdhR NOLOHH_02855 0.20 -2.6
486,658 - pdhR NOLOHH_02855 0.22 -0.0
486,689 + pdhR NOLOHH_02855 0.26 -0.6
486,739 - pdhR NOLOHH_02855 0.33 +0.4
486,739 - pdhR NOLOHH_02855 0.33 -0.6
486,739 - pdhR NOLOHH_02855 0.33 +1.4
486,739 - pdhR NOLOHH_02855 0.33 -0.3
486,898 - pdhR NOLOHH_02855 0.53 +0.4
486,898 - pdhR NOLOHH_02855 0.53 -0.3
486,901 - pdhR NOLOHH_02855 0.54 +0.4
486,963 - pdhR NOLOHH_02855 0.62 -0.6
486,963 - pdhR NOLOHH_02855 0.62 -1.8
486,963 - pdhR NOLOHH_02855 0.62 -0.6
486,963 - pdhR NOLOHH_02855 0.62 -0.5
486,963 - pdhR NOLOHH_02855 0.62 +1.0
487,340 + +0.4
487,386 + +1.0
487,401 + +0.6
487,401 + +0.0
487,402 - +0.3
487,423 + +0.6
487,602 + -2.2
487,628 - -0.6
487,628 - -0.4
487,762 + +0.1
487,763 - -0.4
487,827 - +0.1
487,860 + -0.1
487,913 + +0.1
487,916 + -1.6
487,917 - -0.1
487,917 - -0.8
488,031 + aroP NOLOHH_02860 0.17 +2.0
488,044 + aroP NOLOHH_02860 0.18 -0.6
488,044 + aroP NOLOHH_02860 0.18 +0.4
488,047 - aroP NOLOHH_02860 0.18 +2.4
488,050 + aroP NOLOHH_02860 0.18 +0.2
488,050 + aroP NOLOHH_02860 0.18 -0.3
488,051 - aroP NOLOHH_02860 0.18 -0.1
488,051 - aroP NOLOHH_02860 0.18 +0.2
488,108 + aroP NOLOHH_02860 0.23 -3.2
488,143 + aroP NOLOHH_02860 0.25 -0.1
488,143 + aroP NOLOHH_02860 0.25 +0.1
488,144 - aroP NOLOHH_02860 0.25 -0.3
488,144 - aroP NOLOHH_02860 0.25 -0.7
488,144 - aroP NOLOHH_02860 0.25 +0.7

Or see this region's nucleotide sequence