Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mltD and ubiE are separated by 47 nucleotides ubiE and yafD are separated by 77 nucleotides
NOLOHH_02330: mltD - murein transglycosylase D, at 375,120 to 376,340
mltD
NOLOHH_02335: ubiE - SAM-dependent methyltransferase, at 376,388 to 377,158
ubiE
NOLOHH_02340: yafD - endonuclease/exonuclease/phosphatase family protein, at 377,236 to 378,015
yafD
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.435 kb on + strand, within mltD at 375.506 kb on + strand, within mltD at 375.507 kb on - strand, within mltD at 375.566 kb on + strand, within mltD at 375.566 kb on + strand, within mltD at 375.599 kb on + strand, within mltD at 375.669 kb on + strand, within mltD at 375.669 kb on + strand, within mltD at 375.669 kb on + strand, within mltD at 375.669 kb on + strand, within mltD at 375.670 kb on - strand, within mltD at 375.677 kb on + strand, within mltD at 375.699 kb on - strand, within mltD at 375.727 kb on + strand, within mltD at 375.809 kb on + strand, within mltD at 375.809 kb on + strand, within mltD at 375.891 kb on + strand, within mltD at 375.961 kb on + strand, within mltD at 375.961 kb on + strand, within mltD at 375.986 kb on + strand, within mltD at 376.009 kb on - strand, within mltD at 376.041 kb on - strand, within mltD at 376.103 kb on + strand, within mltD at 376.104 kb on - strand, within mltD at 376.181 kb on + strand, within mltD at 376.181 kb on + strand, within mltD at 376.181 kb on + strand, within mltD at 376.181 kb on + strand, within mltD at 376.181 kb on + strand, within mltD at 376.353 kb on + strand at 376.354 kb on - strand at 376.385 kb on + strand at 376.386 kb on - strand at 376.400 kb on - strand at 376.400 kb on - strand at 376.410 kb on - strand at 376.410 kb on - strand at 376.421 kb on - strand at 376.458 kb on + strand at 376.459 kb on - strand at 376.501 kb on + strand, within ubiE at 376.509 kb on - strand, within ubiE at 376.568 kb on - strand, within ubiE at 376.568 kb on - strand, within ubiE at 376.568 kb on - strand, within ubiE at 376.574 kb on - strand, within ubiE at 376.574 kb on - strand, within ubiE at 376.574 kb on - strand, within ubiE at 376.590 kb on - strand, within ubiE at 376.636 kb on - strand, within ubiE at 376.636 kb on - strand, within ubiE at 376.643 kb on + strand, within ubiE at 376.670 kb on + strand, within ubiE at 376.670 kb on + strand, within ubiE at 376.680 kb on - strand, within ubiE at 376.715 kb on + strand, within ubiE at 376.715 kb on + strand, within ubiE at 376.715 kb on + strand, within ubiE at 376.716 kb on - strand, within ubiE at 376.716 kb on - strand, within ubiE at 376.716 kb on - strand, within ubiE at 376.807 kb on - strand, within ubiE at 376.816 kb on + strand, within ubiE at 376.817 kb on - strand, within ubiE at 376.937 kb on + strand, within ubiE at 376.937 kb on + strand, within ubiE at 376.938 kb on - strand, within ubiE at 376.944 kb on + strand, within ubiE at 376.945 kb on - strand, within ubiE at 377.015 kb on + strand, within ubiE at 377.015 kb on + strand, within ubiE at 377.016 kb on - strand, within ubiE at 377.060 kb on + strand, within ubiE at 377.060 kb on + strand, within ubiE at 377.061 kb on - strand, within ubiE at 377.061 kb on - strand, within ubiE at 377.081 kb on + strand, within ubiE at 377.081 kb on + strand, within ubiE at 377.082 kb on - strand at 377.093 kb on + strand at 377.116 kb on + strand at 377.175 kb on + strand at 377.176 kb on - strand at 377.185 kb on + strand at 377.185 kb on + strand at 377.185 kb on + strand at 377.185 kb on + strand at 377.232 kb on + strand at 377.232 kb on + strand at 377.233 kb on - strand at 377.233 kb on - strand at 377.233 kb on - strand at 377.237 kb on + strand at 377.237 kb on + strand at 377.237 kb on + strand at 377.238 kb on - strand at 377.238 kb on - strand at 377.241 kb on + strand at 377.242 kb on - strand at 377.432 kb on - strand, within yafD at 377.448 kb on + strand, within yafD at 377.517 kb on + strand, within yafD at 377.524 kb on + strand, within yafD at 377.524 kb on + strand, within yafD at 377.524 kb on + strand, within yafD at 377.525 kb on - strand, within yafD at 377.532 kb on + strand, within yafD at 377.532 kb on + strand, within yafD at 377.532 kb on + strand, within yafD at 377.532 kb on + strand, within yafD at 377.533 kb on - strand, within yafD at 377.535 kb on + strand, within yafD at 377.536 kb on - strand, within yafD at 377.537 kb on + strand, within yafD at 377.572 kb on + strand, within yafD at 377.572 kb on + strand, within yafD at 377.572 kb on + strand, within yafD at 377.573 kb on - strand, within yafD at 377.574 kb on + strand, within yafD at 377.574 kb on + strand, within yafD at 377.574 kb on + strand, within yafD at 377.574 kb on + strand, within yafD at 377.575 kb on - strand, within yafD at 377.577 kb on + strand, within yafD at 377.577 kb on + strand, within yafD at 377.598 kb on + strand, within yafD at 377.605 kb on + strand, within yafD at 377.612 kb on + strand, within yafD at 377.678 kb on + strand, within yafD at 377.678 kb on + strand, within yafD at 377.678 kb on + strand, within yafD at 377.679 kb on - strand, within yafD at 377.679 kb on - strand, within yafD at 377.679 kb on - strand, within yafD at 377.763 kb on - strand, within yafD at 377.782 kb on + strand, within yafD at 377.786 kb on - strand, within yafD at 377.786 kb on - strand, within yafD at 377.815 kb on + strand, within yafD at 377.882 kb on + strand, within yafD at 377.882 kb on + strand, within yafD at 377.882 kb on + strand, within yafD at 377.882 kb on + strand, within yafD at 377.882 kb on + strand, within yafD at 377.883 kb on - strand, within yafD at 377.884 kb on + strand, within yafD at 377.884 kb on + strand, within yafD at 377.884 kb on + strand, within yafD at 377.885 kb on - strand, within yafD at 377.885 kb on - strand, within yafD at 377.941 kb on + strand at 378.008 kb on + strand at 378.008 kb on + strand at 378.020 kb on + strand at 378.020 kb on + strand at 378.055 kb on + strand at 378.055 kb on + strand at 378.058 kb on + strand at 378.058 kb on + strand at 378.059 kb on - strand at 378.059 kb on - strand at 378.089 kb on + strand at 378.089 kb on + strand at 378.096 kb on - strand at 378.096 kb on - strand at 378.107 kb on - strand at 378.132 kb on + strand at 378.132 kb on + strand at 378.134 kb on + strand at 378.134 kb on + strand at 378.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 375,435 + mltD NOLOHH_02330 0.26 -0.0 375,506 + mltD NOLOHH_02330 0.32 +0.7 375,507 - mltD NOLOHH_02330 0.32 +0.7 375,566 + mltD NOLOHH_02330 0.37 -0.7 375,566 + mltD NOLOHH_02330 0.37 -0.8 375,599 + mltD NOLOHH_02330 0.39 +0.1 375,669 + mltD NOLOHH_02330 0.45 +0.2 375,669 + mltD NOLOHH_02330 0.45 -0.9 375,669 + mltD NOLOHH_02330 0.45 -0.6 375,669 + mltD NOLOHH_02330 0.45 -0.8 375,670 - mltD NOLOHH_02330 0.45 +1.0 375,677 + mltD NOLOHH_02330 0.46 -0.2 375,699 - mltD NOLOHH_02330 0.47 -0.2 375,727 + mltD NOLOHH_02330 0.50 +0.1 375,809 + mltD NOLOHH_02330 0.56 -0.1 375,809 + mltD NOLOHH_02330 0.56 -0.1 375,891 + mltD NOLOHH_02330 0.63 -1.2 375,961 + mltD NOLOHH_02330 0.69 -1.0 375,961 + mltD NOLOHH_02330 0.69 -0.0 375,986 + mltD NOLOHH_02330 0.71 -0.3 376,009 - mltD NOLOHH_02330 0.73 +1.4 376,041 - mltD NOLOHH_02330 0.75 +0.1 376,103 + mltD NOLOHH_02330 0.81 +1.0 376,104 - mltD NOLOHH_02330 0.81 +0.4 376,181 + mltD NOLOHH_02330 0.87 -0.7 376,181 + mltD NOLOHH_02330 0.87 -0.0 376,181 + mltD NOLOHH_02330 0.87 +0.4 376,181 + mltD NOLOHH_02330 0.87 +0.4 376,181 + mltD NOLOHH_02330 0.87 +0.7 376,353 + -0.3 376,354 - +2.0 376,385 + +0.3 376,386 - +0.4 376,400 - +0.8 376,400 - -0.0 376,410 - +0.6 376,410 - +0.4 376,421 - -0.4 376,458 + +0.4 376,459 - -0.2 376,501 + ubiE NOLOHH_02335 0.15 -0.2 376,509 - ubiE NOLOHH_02335 0.16 -0.5 376,568 - ubiE NOLOHH_02335 0.23 +0.6 376,568 - ubiE NOLOHH_02335 0.23 +1.0 376,568 - ubiE NOLOHH_02335 0.23 -1.9 376,574 - ubiE NOLOHH_02335 0.24 +0.2 376,574 - ubiE NOLOHH_02335 0.24 +0.5 376,574 - ubiE NOLOHH_02335 0.24 -1.4 376,590 - ubiE NOLOHH_02335 0.26 +0.4 376,636 - ubiE NOLOHH_02335 0.32 +0.4 376,636 - ubiE NOLOHH_02335 0.32 -0.6 376,643 + ubiE NOLOHH_02335 0.33 +0.4 376,670 + ubiE NOLOHH_02335 0.37 -0.6 376,670 + ubiE NOLOHH_02335 0.37 -0.2 376,680 - ubiE NOLOHH_02335 0.38 -0.7 376,715 + ubiE NOLOHH_02335 0.42 -0.2 376,715 + ubiE NOLOHH_02335 0.42 +0.4 376,715 + ubiE NOLOHH_02335 0.42 +1.1 376,716 - ubiE NOLOHH_02335 0.43 -0.0 376,716 - ubiE NOLOHH_02335 0.43 +1.7 376,716 - ubiE NOLOHH_02335 0.43 -0.2 376,807 - ubiE NOLOHH_02335 0.54 -0.8 376,816 + ubiE NOLOHH_02335 0.56 +2.0 376,817 - ubiE NOLOHH_02335 0.56 +0.7 376,937 + ubiE NOLOHH_02335 0.71 -1.2 376,937 + ubiE NOLOHH_02335 0.71 +0.1 376,938 - ubiE NOLOHH_02335 0.71 -0.0 376,944 + ubiE NOLOHH_02335 0.72 +0.1 376,945 - ubiE NOLOHH_02335 0.72 +0.8 377,015 + ubiE NOLOHH_02335 0.81 +0.8 377,015 + ubiE NOLOHH_02335 0.81 -0.3 377,016 - ubiE NOLOHH_02335 0.81 +0.9 377,060 + ubiE NOLOHH_02335 0.87 +1.7 377,060 + ubiE NOLOHH_02335 0.87 +1.7 377,061 - ubiE NOLOHH_02335 0.87 -0.8 377,061 - ubiE NOLOHH_02335 0.87 -0.7 377,081 + ubiE NOLOHH_02335 0.90 +0.2 377,081 + ubiE NOLOHH_02335 0.90 -0.4 377,082 - -0.4 377,093 + -0.9 377,116 + +0.6 377,175 + +0.6 377,176 - -0.6 377,185 + +0.5 377,185 + -1.5 377,185 + +0.1 377,185 + -0.3 377,232 + +1.2 377,232 + +1.6 377,233 - +0.7 377,233 - +0.2 377,233 - -0.8 377,237 + -0.3 377,237 + -1.2 377,237 + -0.1 377,238 - +0.4 377,238 - +0.1 377,241 + +0.4 377,242 - +0.4 377,432 - yafD NOLOHH_02340 0.25 -0.0 377,448 + yafD NOLOHH_02340 0.27 +0.4 377,517 + yafD NOLOHH_02340 0.36 +0.5 377,524 + yafD NOLOHH_02340 0.37 +0.1 377,524 + yafD NOLOHH_02340 0.37 +0.0 377,524 + yafD NOLOHH_02340 0.37 +0.4 377,525 - yafD NOLOHH_02340 0.37 +1.0 377,532 + yafD NOLOHH_02340 0.38 -0.6 377,532 + yafD NOLOHH_02340 0.38 -1.2 377,532 + yafD NOLOHH_02340 0.38 +0.5 377,532 + yafD NOLOHH_02340 0.38 +0.4 377,533 - yafD NOLOHH_02340 0.38 -0.2 377,535 + yafD NOLOHH_02340 0.38 -0.9 377,536 - yafD NOLOHH_02340 0.38 -1.2 377,537 + yafD NOLOHH_02340 0.39 -0.8 377,572 + yafD NOLOHH_02340 0.43 +0.8 377,572 + yafD NOLOHH_02340 0.43 +0.7 377,572 + yafD NOLOHH_02340 0.43 -2.6 377,573 - yafD NOLOHH_02340 0.43 -0.6 377,574 + yafD NOLOHH_02340 0.43 -0.2 377,574 + yafD NOLOHH_02340 0.43 -0.4 377,574 + yafD NOLOHH_02340 0.43 +1.0 377,574 + yafD NOLOHH_02340 0.43 +0.9 377,575 - yafD NOLOHH_02340 0.43 +0.9 377,577 + yafD NOLOHH_02340 0.44 +0.6 377,577 + yafD NOLOHH_02340 0.44 +1.4 377,598 + yafD NOLOHH_02340 0.46 -0.8 377,605 + yafD NOLOHH_02340 0.47 +0.4 377,612 + yafD NOLOHH_02340 0.48 +0.1 377,678 + yafD NOLOHH_02340 0.57 -0.2 377,678 + yafD NOLOHH_02340 0.57 -0.6 377,678 + yafD NOLOHH_02340 0.57 -0.7 377,679 - yafD NOLOHH_02340 0.57 -0.9 377,679 - yafD NOLOHH_02340 0.57 -0.4 377,679 - yafD NOLOHH_02340 0.57 +0.6 377,763 - yafD NOLOHH_02340 0.68 +1.1 377,782 + yafD NOLOHH_02340 0.70 -1.0 377,786 - yafD NOLOHH_02340 0.71 -0.8 377,786 - yafD NOLOHH_02340 0.71 +0.9 377,815 + yafD NOLOHH_02340 0.74 +1.0 377,882 + yafD NOLOHH_02340 0.83 +1.6 377,882 + yafD NOLOHH_02340 0.83 -1.4 377,882 + yafD NOLOHH_02340 0.83 +0.2 377,882 + yafD NOLOHH_02340 0.83 +0.8 377,882 + yafD NOLOHH_02340 0.83 -0.6 377,883 - yafD NOLOHH_02340 0.83 +0.4 377,884 + yafD NOLOHH_02340 0.83 +0.7 377,884 + yafD NOLOHH_02340 0.83 +0.9 377,884 + yafD NOLOHH_02340 0.83 -1.0 377,885 - yafD NOLOHH_02340 0.83 +0.8 377,885 - yafD NOLOHH_02340 0.83 +0.8 377,941 + -1.2 378,008 + -1.0 378,008 + -1.0 378,020 + +0.6 378,020 + +1.4 378,055 + +0.4 378,055 + -0.2 378,058 + -1.2 378,058 + -1.9 378,059 - -0.6 378,059 - +0.2 378,089 + -0.6 378,089 + +0.4 378,096 - -0.1 378,096 - -0.6 378,107 - +0.9 378,132 + -0.0 378,132 + -0.0 378,134 + -0.1 378,134 + +0.1 378,144 + -0.2
Or see this region's nucleotide sequence