Strain Fitness in Escherichia coli ECOR27 around NOLOHH_01880
Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bas67 |
---|---|---|---|---|---|
remove | |||||
273,329 | + | pdeL | NOLOHH_01875 | 0.29 | -1.8 |
273,330 | - | pdeL | NOLOHH_01875 | 0.29 | +1.0 |
273,330 | - | pdeL | NOLOHH_01875 | 0.29 | +0.7 |
273,330 | - | pdeL | NOLOHH_01875 | 0.29 | -0.0 |
273,330 | - | pdeL | NOLOHH_01875 | 0.29 | +1.4 |
273,358 | - | pdeL | NOLOHH_01875 | 0.32 | -0.2 |
273,386 | + | pdeL | NOLOHH_01875 | 0.34 | +1.2 |
273,426 | - | pdeL | NOLOHH_01875 | 0.38 | +0.8 |
273,588 | + | pdeL | NOLOHH_01875 | 0.53 | -0.5 |
273,589 | - | pdeL | NOLOHH_01875 | 0.53 | -0.3 |
273,597 | - | pdeL | NOLOHH_01875 | 0.54 | +0.4 |
273,675 | + | pdeL | NOLOHH_01875 | 0.61 | +0.4 |
273,783 | - | pdeL | NOLOHH_01875 | 0.71 | -0.8 |
273,881 | + | pdeL | NOLOHH_01875 | 0.80 | +0.4 |
273,881 | + | pdeL | NOLOHH_01875 | 0.80 | +0.4 |
273,882 | - | pdeL | NOLOHH_01875 | 0.80 | -0.8 |
273,884 | + | pdeL | NOLOHH_01875 | 0.80 | +2.1 |
273,885 | - | pdeL | NOLOHH_01875 | 0.80 | -0.7 |
273,911 | - | pdeL | NOLOHH_01875 | 0.83 | +0.6 |
274,006 | - | -0.6 | |||
274,116 | + | +0.4 | |||
274,117 | - | -1.6 | |||
274,117 | - | -0.6 | |||
274,200 | + | +0.6 | |||
274,201 | - | +1.4 | |||
274,228 | - | +0.1 | |||
274,234 | + | -0.4 | |||
274,235 | - | +0.1 | |||
274,256 | + | +1.4 | |||
274,256 | + | +0.4 | |||
274,282 | + | -0.6 | |||
274,283 | + | +0.4 | |||
274,283 | + | -0.2 | |||
274,283 | + | +0.4 | |||
274,284 | - | -0.1 | |||
274,284 | - | -0.5 | |||
274,284 | - | +1.5 | |||
274,284 | - | -0.2 | |||
274,284 | - | -0.6 | |||
274,284 | - | +1.1 | |||
274,286 | - | +0.4 | |||
274,286 | - | -0.2 | |||
274,342 | - | -0.0 | |||
274,377 | - | -0.9 | |||
274,377 | - | +0.4 | |||
274,416 | - | -0.6 | |||
274,458 | + | -0.8 | |||
274,484 | + | +1.0 | |||
274,485 | - | -1.6 | |||
274,499 | + | +1.7 | |||
274,500 | - | -0.2 | |||
274,563 | - | +0.1 | |||
274,563 | - | +0.1 | |||
274,563 | - | -1.7 | |||
274,563 | - | +0.4 | |||
274,563 | - | -0.0 | |||
274,642 | + | ehaA | NOLOHH_01880 | 0.10 | -0.4 |
274,642 | + | ehaA | NOLOHH_01880 | 0.10 | +1.0 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | -0.9 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | +1.4 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | -1.2 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | -0.8 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | +0.0 |
274,643 | - | ehaA | NOLOHH_01880 | 0.10 | -0.7 |
274,684 | - | ehaA | NOLOHH_01880 | 0.11 | +0.1 |
274,684 | - | ehaA | NOLOHH_01880 | 0.11 | -0.6 |
274,697 | - | ehaA | NOLOHH_01880 | 0.11 | -0.1 |
274,736 | - | ehaA | NOLOHH_01880 | 0.12 | -0.3 |
274,749 | + | ehaA | NOLOHH_01880 | 0.13 | -0.9 |
274,749 | + | ehaA | NOLOHH_01880 | 0.13 | +0.1 |
274,749 | + | ehaA | NOLOHH_01880 | 0.13 | -0.3 |
274,750 | - | ehaA | NOLOHH_01880 | 0.13 | +1.3 |
274,772 | + | ehaA | NOLOHH_01880 | 0.13 | -0.9 |
274,808 | - | ehaA | NOLOHH_01880 | 0.14 | +0.8 |
274,817 | + | ehaA | NOLOHH_01880 | 0.14 | -1.1 |
274,838 | - | ehaA | NOLOHH_01880 | 0.15 | -0.9 |
274,850 | - | ehaA | NOLOHH_01880 | 0.15 | +0.7 |
274,862 | + | ehaA | NOLOHH_01880 | 0.16 | -1.2 |
274,862 | + | ehaA | NOLOHH_01880 | 0.16 | +0.1 |
274,862 | + | ehaA | NOLOHH_01880 | 0.16 | +0.1 |
274,863 | - | ehaA | NOLOHH_01880 | 0.16 | -0.0 |
274,863 | - | ehaA | NOLOHH_01880 | 0.16 | -0.6 |
274,863 | - | ehaA | NOLOHH_01880 | 0.16 | +0.4 |
274,863 | - | ehaA | NOLOHH_01880 | 0.16 | +0.6 |
275,014 | + | ehaA | NOLOHH_01880 | 0.19 | -0.2 |
275,060 | + | ehaA | NOLOHH_01880 | 0.21 | +0.4 |
275,060 | + | ehaA | NOLOHH_01880 | 0.21 | -1.9 |
275,061 | - | ehaA | NOLOHH_01880 | 0.21 | -0.0 |
275,063 | + | ehaA | NOLOHH_01880 | 0.21 | -1.2 |
275,090 | + | ehaA | NOLOHH_01880 | 0.21 | +0.0 |
275,091 | - | ehaA | NOLOHH_01880 | 0.21 | -0.0 |
275,126 | + | ehaA | NOLOHH_01880 | 0.22 | -1.1 |
275,128 | + | ehaA | NOLOHH_01880 | 0.22 | -0.1 |
275,128 | + | ehaA | NOLOHH_01880 | 0.22 | -1.2 |
275,129 | - | ehaA | NOLOHH_01880 | 0.22 | -0.6 |
275,129 | - | ehaA | NOLOHH_01880 | 0.22 | +0.0 |
275,129 | - | ehaA | NOLOHH_01880 | 0.22 | +0.0 |
275,131 | + | ehaA | NOLOHH_01880 | 0.22 | -0.7 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.0 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.2 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.8 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | +0.4 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.4 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | +0.7 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | +0.1 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.2 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | +0.6 |
275,132 | - | ehaA | NOLOHH_01880 | 0.22 | -0.0 |
275,135 | + | ehaA | NOLOHH_01880 | 0.22 | -0.1 |
275,135 | + | ehaA | NOLOHH_01880 | 0.22 | -0.4 |
275,135 | + | ehaA | NOLOHH_01880 | 0.22 | +1.3 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +0.3 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +0.4 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +0.6 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | -1.6 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +0.5 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | -0.2 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +1.2 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +1.4 |
275,136 | - | ehaA | NOLOHH_01880 | 0.22 | +2.0 |
275,174 | + | ehaA | NOLOHH_01880 | 0.23 | +0.7 |
275,175 | - | ehaA | NOLOHH_01880 | 0.23 | -0.6 |
275,175 | - | ehaA | NOLOHH_01880 | 0.23 | -0.2 |
275,200 | + | ehaA | NOLOHH_01880 | 0.24 | -0.7 |
275,200 | + | ehaA | NOLOHH_01880 | 0.24 | +0.2 |
275,200 | + | ehaA | NOLOHH_01880 | 0.24 | +0.3 |
275,201 | - | ehaA | NOLOHH_01880 | 0.24 | -2.4 |
275,201 | - | ehaA | NOLOHH_01880 | 0.24 | -0.3 |
275,201 | - | ehaA | NOLOHH_01880 | 0.24 | +0.4 |
275,255 | + | ehaA | NOLOHH_01880 | 0.25 | -0.3 |
275,256 | - | ehaA | NOLOHH_01880 | 0.25 | +0.1 |
275,360 | - | ehaA | NOLOHH_01880 | 0.28 | -0.2 |
275,373 | - | ehaA | NOLOHH_01880 | 0.28 | +1.4 |
275,401 | + | ehaA | NOLOHH_01880 | 0.29 | +1.4 |
275,401 | + | ehaA | NOLOHH_01880 | 0.29 | +0.8 |
275,402 | - | ehaA | NOLOHH_01880 | 0.29 | +1.4 |
275,402 | - | ehaA | NOLOHH_01880 | 0.29 | -1.3 |
275,456 | + | ehaA | NOLOHH_01880 | 0.30 | -0.5 |
275,457 | - | ehaA | NOLOHH_01880 | 0.30 | +1.1 |
275,463 | + | ehaA | NOLOHH_01880 | 0.31 | +1.4 |
275,463 | + | ehaA | NOLOHH_01880 | 0.31 | +0.4 |
275,463 | + | ehaA | NOLOHH_01880 | 0.31 | -1.9 |
275,464 | - | ehaA | NOLOHH_01880 | 0.31 | -0.2 |
275,464 | - | ehaA | NOLOHH_01880 | 0.31 | -0.1 |
275,464 | - | ehaA | NOLOHH_01880 | 0.31 | -0.9 |
275,464 | - | ehaA | NOLOHH_01880 | 0.31 | -2.2 |
275,472 | - | ehaA | NOLOHH_01880 | 0.31 | -0.7 |
275,546 | + | ehaA | NOLOHH_01880 | 0.33 | +0.1 |
275,601 | - | ehaA | NOLOHH_01880 | 0.34 | -1.0 |
275,601 | - | ehaA | NOLOHH_01880 | 0.34 | +0.8 |
275,601 | - | ehaA | NOLOHH_01880 | 0.34 | -0.6 |
275,608 | - | ehaA | NOLOHH_01880 | 0.34 | +0.1 |
275,608 | - | ehaA | NOLOHH_01880 | 0.34 | -0.2 |
275,610 | + | ehaA | NOLOHH_01880 | 0.34 | +0.4 |
275,610 | + | ehaA | NOLOHH_01880 | 0.34 | -0.5 |
275,610 | + | ehaA | NOLOHH_01880 | 0.34 | -0.3 |
275,610 | + | ehaA | NOLOHH_01880 | 0.34 | +0.4 |
275,610 | + | ehaA | NOLOHH_01880 | 0.34 | -0.6 |
275,611 | - | ehaA | NOLOHH_01880 | 0.34 | +1.1 |
275,611 | - | ehaA | NOLOHH_01880 | 0.34 | +1.4 |
275,611 | - | ehaA | NOLOHH_01880 | 0.34 | -1.9 |
275,633 | - | ehaA | NOLOHH_01880 | 0.35 | -0.4 |
275,633 | - | ehaA | NOLOHH_01880 | 0.35 | +0.3 |
275,633 | - | ehaA | NOLOHH_01880 | 0.35 | -1.6 |
275,633 | - | ehaA | NOLOHH_01880 | 0.35 | +2.7 |
275,725 | + | ehaA | NOLOHH_01880 | 0.37 | -1.4 |
275,834 | + | ehaA | NOLOHH_01880 | 0.40 | +1.7 |
275,843 | + | ehaA | NOLOHH_01880 | 0.40 | -0.5 |
275,843 | + | ehaA | NOLOHH_01880 | 0.40 | +0.5 |
275,843 | + | ehaA | NOLOHH_01880 | 0.40 | -0.2 |
275,844 | - | ehaA | NOLOHH_01880 | 0.40 | +1.1 |
275,844 | - | ehaA | NOLOHH_01880 | 0.40 | -0.9 |
275,844 | - | ehaA | NOLOHH_01880 | 0.40 | +0.7 |
275,844 | - | ehaA | NOLOHH_01880 | 0.40 | -0.5 |
275,983 | - | ehaA | NOLOHH_01880 | 0.44 | +0.3 |
276,044 | + | ehaA | NOLOHH_01880 | 0.45 | +0.1 |
276,045 | - | ehaA | NOLOHH_01880 | 0.45 | -1.2 |
276,045 | - | ehaA | NOLOHH_01880 | 0.45 | +0.5 |
276,148 | + | ehaA | NOLOHH_01880 | 0.48 | -0.3 |
276,148 | + | ehaA | NOLOHH_01880 | 0.48 | -0.1 |
276,148 | + | ehaA | NOLOHH_01880 | 0.48 | +0.4 |
276,148 | + | ehaA | NOLOHH_01880 | 0.48 | -0.6 |
276,149 | - | ehaA | NOLOHH_01880 | 0.48 | -0.8 |
276,258 | - | ehaA | NOLOHH_01880 | 0.51 | -0.7 |
276,300 | + | ehaA | NOLOHH_01880 | 0.52 | +1.1 |
276,331 | + | ehaA | NOLOHH_01880 | 0.52 | -0.2 |
276,332 | - | ehaA | NOLOHH_01880 | 0.52 | -1.5 |
276,332 | - | ehaA | NOLOHH_01880 | 0.52 | +0.6 |
276,332 | - | ehaA | NOLOHH_01880 | 0.52 | +0.1 |
276,368 | - | ehaA | NOLOHH_01880 | 0.53 | +1.0 |
276,373 | + | ehaA | NOLOHH_01880 | 0.53 | +1.2 |
276,374 | - | ehaA | NOLOHH_01880 | 0.54 | +0.2 |
276,374 | - | ehaA | NOLOHH_01880 | 0.54 | +1.2 |
276,374 | - | ehaA | NOLOHH_01880 | 0.54 | -1.4 |
276,374 | - | ehaA | NOLOHH_01880 | 0.54 | +1.0 |
276,512 | + | ehaA | NOLOHH_01880 | 0.57 | +0.4 |
276,513 | - | ehaA | NOLOHH_01880 | 0.57 | -0.2 |
276,513 | - | ehaA | NOLOHH_01880 | 0.57 | +0.1 |
276,564 | - | ehaA | NOLOHH_01880 | 0.58 | -0.3 |
276,574 | - | ehaA | NOLOHH_01880 | 0.59 | +1.4 |
276,574 | - | ehaA | NOLOHH_01880 | 0.59 | -1.9 |
276,582 | + | ehaA | NOLOHH_01880 | 0.59 | +1.0 |
276,583 | - | ehaA | NOLOHH_01880 | 0.59 | -0.5 |
276,583 | - | ehaA | NOLOHH_01880 | 0.59 | +0.2 |
276,583 | - | ehaA | NOLOHH_01880 | 0.59 | -0.2 |
276,583 | - | ehaA | NOLOHH_01880 | 0.59 | -1.1 |
276,583 | - | ehaA | NOLOHH_01880 | 0.59 | +0.1 |
276,638 | + | ehaA | NOLOHH_01880 | 0.60 | +0.4 |
276,639 | - | ehaA | NOLOHH_01880 | 0.60 | -2.1 |
276,753 | + | ehaA | NOLOHH_01880 | 0.63 | -1.2 |
276,819 | - | ehaA | NOLOHH_01880 | 0.65 | -1.2 |
276,819 | - | ehaA | NOLOHH_01880 | 0.65 | -0.3 |
276,863 | + | ehaA | NOLOHH_01880 | 0.66 | -0.3 |
276,906 | + | ehaA | NOLOHH_01880 | 0.67 | +1.1 |
276,918 | - | ehaA | NOLOHH_01880 | 0.67 | +1.7 |
276,918 | - | ehaA | NOLOHH_01880 | 0.67 | -0.8 |
276,918 | - | ehaA | NOLOHH_01880 | 0.67 | +0.0 |
277,056 | - | ehaA | NOLOHH_01880 | 0.71 | +0.1 |
277,073 | - | ehaA | NOLOHH_01880 | 0.71 | -0.6 |
277,137 | - | ehaA | NOLOHH_01880 | 0.73 | -0.2 |
277,272 | - | ehaA | NOLOHH_01880 | 0.76 | -2.2 |
277,501 | - | ehaA | NOLOHH_01880 | 0.82 | +0.6 |
277,527 | - | ehaA | NOLOHH_01880 | 0.82 | +1.4 |
277,602 | - | ehaA | NOLOHH_01880 | 0.84 | +0.2 |
277,704 | + | ehaA | NOLOHH_01880 | 0.87 | +0.6 |
277,719 | - | ehaA | NOLOHH_01880 | 0.87 | -0.1 |
277,719 | - | ehaA | NOLOHH_01880 | 0.87 | +1.3 |
277,721 | - | ehaA | NOLOHH_01880 | 0.87 | +0.4 |
277,829 | - | +0.4 | |||
277,831 | - | -0.2 | |||
277,831 | - | -0.3 | |||
277,831 | - | -0.3 | |||
277,906 | - | -0.7 | |||
277,968 | - | -0.0 | |||
277,968 | - | -0.2 | |||
278,010 | - | +0.1 | |||
278,336 | - | +0.7 | |||
278,529 | + | -0.0 | |||
278,680 | - | +0.4 | |||
278,718 | + | +0.2 | |||
278,723 | + | +0.5 | |||
278,852 | - | +1.7 | |||
278,852 | - | -0.7 | |||
278,857 | - | -0.1 | |||
278,858 | - | +0.4 | |||
278,885 | - | -0.6 | |||
278,910 | + | -0.4 | |||
278,968 | - | -0.2 | |||
278,983 | + | +0.4 | |||
278,984 | - | -1.6 | |||
279,129 | + | betT | NOLOHH_01885 | 0.16 | +0.4 |
279,129 | + | betT | NOLOHH_01885 | 0.16 | -0.2 |
279,130 | - | betT | NOLOHH_01885 | 0.16 | -0.4 |
279,207 | + | betT | NOLOHH_01885 | 0.20 | -0.6 |
Or see this region's nucleotide sequence